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Arabidopsis thaliana
Brassica napus
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BLAST
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Human
Drosophila
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
5.3 Possible multiple function proteins
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
110
Glyma04g42000
Glyma06g12770
jgi|Phypa1_1|124598|e_gw1.50.8.1
jgi|Phypa1_1|138209|e_gw1.144.2.1
GRMZM2G142072
LOC_Os02g53230
LOC_Os06g10620
jgi|Sorbi1|5004888|estExt_fgenesh1_pg.C_chr_43015
jgi|Sorbi1|5061476|Sb10g006840
IMGA|AC202323_2.1
LjSGA_021219.1
LjSGA_046152.1
AT2G34210
AT4G08350
GSVIVP00014304001
grail3.0045010901_648692
estExt_Genewise1_v1.C_LG_IV0779_713135
estExt_Genewise1_v1.C_LG_IX1543_721868
131
Glyma01g14800
Glyma11g16460
jgi|Phypa1_1|132978|e_gw1.100.7.1
jgi|Phypa1_1|204356|estExt_Genewise1.C_200056
GRMZM2G056393
LOC_Os03g36780
jgi|Sorbi1|122995|fgenesh1_pm.C_chr_1000049
IMGA|AC146553_39.2
IMGA|AC169516_26.2
LjSGA_054933.1
LjSGA_134201.1
AT1G45332
AT2G45030
GSVIVP00019173001
eugene3.00030820_554187
estExt_Genewise1_v1.C_1270270_744104
176
Glyma12g28690
GRMZM2G125531
LOC_Os01g66300
LOC_Os05g34670
jgi|Sorbi1|129987|fgenesh1_pm.C_chr_9000304
jgi|Sorbi1|148375|estExt_fgenesh1_kg.C_chr_30365
IMGA|AC140549_7.2
chr6.LjT09E22.140.nd
AT1G09660
gw1.150.139.1_272324
gw1.86.88.1_297197
299
Glyma05g04210
Glyma17g14650
jgi|Phypa1_1|61310|fgenesh1_pm.scaffold_352000002
GRMZM2G123719
GRMZM2G371062
LOC_Os04g45490
jgi|Sorbi1|5057596|Sb06g023840
IMGA|AC146564_7.2
AT1G62750
GSVIVP00007283001
estExt_Genewise1_v1.C_LG_III0383_711780
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