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Arabidopsis thaliana
Brassica napus
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Human
Drosophila
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
5.2 Nucleotide Binding proteins
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
49
Glyma11g12200
Glyma12g04400
jgi|Phypa1_1|105017|estExt_fgenesh1_pm.C_220029
jgi|Phypa1_1|159285|estExt_fgenesh1_pg.C_110141
GRMZM2G070831
GRMZM2G071873
GRMZM2G124576
GRMZM2G125148
LOC_Os03g22730
LOC_Os03g22740
jgi|Sorbi1|147416|estExt_fgenesh1_kg.C_chr_10400
jgi|Sorbi1|4754504|estExt_Genewise1.C_chr_310755
IMGA|AC121244_28.2
IMGA|CT573507_3.2
IMGA|CT963113_7.2
AT3G05060
AT5G27120
GSVIVP00031075001
gw1.XIII.1268.1_241019
gw1.70.375.1_294922
120
Glyma02g39640
Glyma11g29430
Glyma14g37690
Glyma18g06560
jgi|Phypa1_1|173455|estExt_fgenesh1_pg.C_4620015
jgi|Phypa1_1|231987|fgenesh2_pg.scaffold_148000004
GRMZM2G119088
LOC_Os01g07070
jgi|Sorbi1|5035198|Sb03g005050
AT5G58470
GSVIVP00029111001
estExt_fgenesh4_pg.C_LG_IX0842_821339
estExt_fgenesh4_pm.C_LG_I0815_829713
125
Glyma05g30530
Glyma08g13680
Glyma12g08330
jgi|Phypa1_1|101177|fgenesh1_pg.scaffold_458000001
jgi|Phypa1_1|220946|estExt_Genewise1.C_2030018
GRMZM2G402002
LOC_Os05g51480
jgi|Sorbi1|146588|estExt_fgenesh1_pm.C_chr_90597
chr6.CM0066.620.nc
AT4G05420
AT4G21100
GSVIVP00028385001
gw1.XI.2860.1_234880
fgenesh4_pg.C_LG_I002797_753194
130
Glyma03g00370
Glyma09g40820
Glyma16g34750
Glyma18g44980
GRMZM2G063643
GRMZM2G472052
LOC_Os07g12490
jgi|Sorbi1|4873614|estExt_Genewise1Plus.C_chr_21433
IMGA|AC169178_21.2
LjT28H07.110.nc
AT2G38610
GSVIVP00033645001
estExt_fgenesh4_pm.C_280159_836278
161
Glyma04g36420
Glyma05g02800
Glyma06g18470
Glyma17g13470
GRMZM2G011129
LOC_Os09g39180
jgi|Sorbi1|5050913|Sb02g011330
chr4.CM0173.30.nd
AT4G24770
AT5G50250
GSVIVP00015937001
GSVIVP00020623001
eugene3.00120829_570176
estExt_fgenesh4_pm.C_LG_XV0240_835181
362
Glyma03g35650
GRMZM2G113513
LOC_Os04g33810
jgi|Sorbi1|149008|estExt_fgenesh1_kg.C_chr_60058
AT5G06210
GSVIVP00021561001
estExt_fgenesh4_pg.C_LG_VI1354_819404
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