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Arabidopsis thaliana
Brassica napus
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Human
Drosophila
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
5.1 Splice factor like
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
35
Glyma01g36670
Glyma02g04980
Glyma16g23010
GRMZM2G152111
LOC_Os06g50890
jgi|Sorbi1|5062301|Sb10g030460
IMGA|AC149582_9.2
IMGA|CR962130_8.2
AT4G35785
GSVIVP00012366001
gw1.57.235.1_424268
82
Glyma03g31440
Glyma19g34290
jgi|Phypa1_1|122727|e_gw1.41.217.1
jgi|Phypa1_1|148526|e_gw1.279.48.1
GRMZM2G070807
GRMZM2G367206
LOC_Os07g08190
jgi|Sorbi1|5050639|Sb02g004430
AT3G63400
GSVIVP00023812001
gw1.V.1019.1_205618
gw1.II.2321.1_410986
95
Glyma06g05400
Glyma14g10670
Glyma17g34850
jgi|Phypa1_1|164948|estExt_fgenesh1_pg.C_800041
jgi|Phypa1_1|80579|fgenesh1_pg.scaffold_87000102
GRMZM2G162992
GRMZM2G177781
LOC_Os02g13130
jgi|Sorbi1|5003827|estExt_fgenesh1_pg.C_chr_40865
IMGA|AC202336_1.1
IMGA|AC202336_9.1
LjSGA_026050.1
AT2G25970
GSVIVP00032165001
estExt_fgenesh4_pg.C_LG_XVIII0149_825640
167
Glyma03g36490
Glyma19g39150
jgi|Phypa1_1|187106|estExt_gwp_gw1.C_1010073
GRMZM2G091449
LOC_Os07g10390
jgi|Sorbi1|4873536|estExt_Genewise1Plus.C_chr_21206
IMGA|AC169179_15.2
IMGA|AC186137_20.2
chr1.CM0029.210.nd
AT3G11960
GSVIVP00025448001
grail3.0030006601_653445
193
Glyma03g41210
Glyma19g43830
GRMZM2G170397
LOC_Os09g39780
jgi|Sorbi1|4747460|estExt_Genewise1.C_chr_22968
AT3G56070
grail3.0085000302_665264
grail3.0085001101_665273
estExt_fgenesh4_pm.C_LG_XIX0027_836014
256
Glyma10g29080
Glyma20g38250
jgi|Phypa1_1|119303|e_gw1.28.128.1
GRMZM2G042807
LOC_Os09g01630
jgi|Sorbi1|5050957|Sb02g012970
IMGA|AC147963_34.2
IMGA|AC150843_1.2
AT2G40650
GSVIVP00022667001
gw1.XIII.692.1_240443
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