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Arabidopsis thaliana
Brassica napus
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Human
Drosophila
Yeast
small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
4.4 cis-trans prolyl isomerases
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
164
Glyma12g30780
Glyma13g39500
jgi|Phypa1_1|85118|fgenesh1_pg.scaffold_131000018
GRMZM2G049525
LOC_Os08g44330
jgi|Sorbi1|5058926|Sb07g024330
LjT01G11.110.nd
AT3G44600
GSVIVP00022051001
gw1.66.27.1_293354
estExt_Genewise1_v1.C_LG_IX0757_721509
271
Glyma01g34630
jgi|Phypa1_1|217956|estExt_Genewise1.C_1500031
GRMZM2G118687
LOC_Os06g04000
jgi|Sorbi1|4862301|e_gw1.10.749.1
LjSGA_082011.1
AT1G01940
GSVIVP00026255001
estExt_Genewise1_v1.C_LG_II0068_709764
estExt_Genewise1_v1.C_LG_XIV0848_730904
278
Glyma01g40170
Glyma11g05130
jgi|Phypa1_1|105316|estExt_fgenesh1_pm.C_330010
GRMZM2G007486
LOC_Os03g10400
jgi|Sorbi1|4872012|estExt_Genewise1Plus.C_chr_110954
IMGA|CT027662_30.2
chr2.CM0168.280.nc
AT5G67530
GSVIVP00012759001
gw1.V.4444.1_209043
286
Glyma17g33430
jgi|Phypa1_1|140808|e_gw1.170.62.1
GRMZM2G036720
LOC_Os01g40050
jgi|Sorbi1|5053235|Sb03g026040
LjSGA_063482.1
AT4G33060
GSVIVP00032219001
grail3.0103003701_668739
fgenesh4_pm.C_LG_VI000667_802320
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