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Arabidopsis thaliana
Brassica napus
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Human
Drosophila
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
4.3 DEAD/H box helicase
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
21
Glyma05g08750
Glyma09g03560
Glyma15g14470
Glyma19g00260
jgi|Phypa1_1|107194|estExt_fgenesh1_pm.C_1380026
jgi|Phypa1_1|180402|estExt_gwp_gw1.C_420049
GRMZM2G066440
GRMZM2G077125
GRMZM2G078826
GRMZM2G703415
LOC_Os01g07740
LOC_Os01g36860
LOC_Os11g46240
jgi|Sorbi1|4824978|e_gw1.5.15871.1
jgi|Sorbi1|4878846|estExt_Genewise1Plus.C_chr_36607
jgi|Sorbi1|5052591|Sb03g004420
IMGA|AC144760_39.2
IMGA|AC174364_26.2
AT3G01540
AT3G06480
AT5G14610
GSVIVP00019684001
GSVIVP00020710001
gw1.I.2506.1_173906
gw1.X.746.1_226049
gw1.XVII.662.1_258671
33
Glyma05g02590
Glyma07g01260
Glyma07g11880
Glyma08g20670
Glyma17g09270
jgi|Phypa1_1|182655|estExt_gwp_gw1.C_590062
GRMZM2G143246
GRMZM2G362850
LOC_Os01g10050
LOC_Os01g68320
jgi|Sorbi1|4881077|estExt_Genewise1Plus.C_chr_310574
jgi|Sorbi1|5001291|estExt_fgenesh1_pg.C_chr_30290
IMGA|AC155896_32.2
chr4.CM0172.160.nc
AT1G55150
AT5G63120
GSVIVP00015999001
GSVIVP00034161001
gw1.XV.1715.1_252279
fgenesh4_pg.C_LG_XII000829_773054
estExt_fgenesh4_pg.C_440087_826955
54
Glyma08g03130
Glyma08g47700
jgi|Phypa1_1|182487|estExt_gwp_gw1.C_580012
jgi|Phypa1_1|183907|estExt_gwp_gw1.C_690013
GRMZM2G040995
GRMZM2G047949
LOC_Os11g07500
LOC_Os12g18140
jgi|Sorbi1|146608|estExt_fgenesh1_pm.C_chr_100011
jgi|Sorbi1|5052547|Sb03g003740
IMGA|AC140023_28.2
IMGA|AC142095_21.2
IMGA|AC148238_27.2
IMGA|CR962137_18.2
chr4.CM0004.610.nc
AT1G59760
AT2G06990
GSVIVP00017018001
GSVIVP00017358001
gw1.164.165.1_274323
gw1.86.170.1_297279
estExt_fgenesh4_pg.C_LG_VI0599_819128
142
Glyma18g32190
Glyma19g03410
jgi|Phypa1_1|137193|e_gw1.135.21.1
jgi|Phypa1_1|155877|e_gw1.492.1.1
GRMZM2G000823
GRMZM2G138041
LOC_Os03g06220
jgi|Sorbi1|5050164|Sb01g046570
IMGA|AC174301_17.2
LjSGA_021996.2
LjSGA_074820.1
AT3G53110
GSVIVP00000562001
eugene3.00280267_589531
189
Glyma03g39670
Glyma19g24360
jgi|Phypa1_1|221558|estExt_Genewise1.C_2150004
GRMZM2G043724
LOC_Os02g05660
LOC_Os06g48210
jgi|Sorbi1|4870881|estExt_Genewise1Plus.C_chr_19265
IMGA|AC152818_1.2
chr2.LjT16G06.150.nd
AT4G33370
AT5G51280
GSVIVP00003270001
gw1.70.344.1_294891
fgenesh4_pm.C_scaffold_86000007_810609
273
Glyma13g30610
jgi|Phypa1_1|108439|estExt_fgenesh1_pm.C_2680003
AC190982.3_FGP008
GRMZM2G305060
LOC_Os01g11370
jgi|Sorbi1|4802285|e_gw1.3.81.1
CM1489.190.nc
AT4G18465
GSVIVP00002999001
estExt_fgenesh4_pm.C_LG_IV0154_831104
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