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Arabidopsis thaliana
Brassica napus
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Human
Drosophila
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
4.1 Proteins involved in other processe
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
53
Glyma01g03610
Glyma09g36870
Glyma12g00510
jgi|Phypa1_1|106184|estExt_fgenesh1_pm.C_650013
jgi|Phypa1_1|161649|estExt_fgenesh1_pg.C_340208
jgi|Phypa1_1|178002|estExt_gwp_gw1.C_280017
GRMZM2G028834
GRMZM2G143330
LOC_Os05g16660
LOC_Os08g21660
jgi|Sorbi1|4873317|estExt_Genewise1Plus.C_chr_20665
IMGA|AC124957_30.2
IMGA|AC133862_22.2
LjSGA_025619.1
AT2G46280
AT2G46290
GSVIVP00030682001
estExt_Genewise1_v1.C_LG_VIII0460_720028
estExt_fgenesh4_pm.C_LG_X0377_833555
58
Glyma05g34330
Glyma08g05320
jgi|Phypa1_1|130035|e_gw1.80.9.1
GRMZM2G461356
LOC_Os01g68810
jgi|Sorbi1|4754423|estExt_Genewise1.C_chr_310626
jgi|Sorbi1|4781426|e_gw1.1.1119.1
jgi|Sorbi1|4781487|e_gw1.1.1074.1
IMGA|AC141922_24.2
IMGA|AC141922_31.2
IMGA|AC141922_32.2
IMGA|AC142094_1.2
IMGA|AC142094_41.2
IMGA|AC142094_42.2
chr4.CM0042.1620.nc
AT1G24706
GSVIVP00003363001
GSVIVP00029432001
GSVIVP00030623001
GSVIVP00030624001
GSVIVP00030625001
gw1.XIX.1514.1_249114
fgenesh4_pm.C_scaffold_87000014_813521
89
Glyma04g04180
Glyma06g04360
jgi|Phypa1_1|186713|estExt_gwp_gw1.C_970072
GRMZM2G069099
LOC_Os02g52820
jgi|Sorbi1|144786|estExt_fgenesh1_pm.C_chr_40996
IMGA|CU012043_30.2
IMGA|CU012043_7.2
IMGA|CU179697_18.1
LjT07K13.120.nd
AT5G42920
GSVIVP00014829001
estExt_fgenesh4_pm.C_400112_836447
126
Glyma02g33770
Glyma10g16090
jgi|Phypa1_1|104560|estExt_fgenesh1_pm.C_90013
jgi|Phypa1_1|106353|estExt_fgenesh1_pm.C_730006
jgi|Phypa1_1|199296|estExt_gwp_gw1.C_3630017
GRMZM2G038313
GRMZM2G151549
LOC_Os07g07250
LOC_Os07g12110
LOC_Os07g32040
jgi|Sorbi1|4746986|estExt_Genewise1.C_chr_21343
LjSGA_052131.1
AT3G57290
GSVIVP00025658001
eugene3.00160374_576239
grail3.0024032201_652677
139
Glyma04g16810
Glyma04g16840
jgi|Phypa1_1|174480|estExt_gwp_gw1.C_70184
GRMZM2G006673
LOC_Os03g01970
jgi|Sorbi1|4746257|estExt_Genewise1.C_chr_112311
IMGA|CR956631_51.2
LjSGA_022120.1
LjSGA_024315.1
AT5G09860
GSVIVP00002011001
GSVIVP00002021001
gw1.I.6978.1_178378
gw1.III.1965.1_414862
187
Glyma07g19080
Glyma07g35400
Glyma20g03420
jgi|Phypa1_1|213820|estExt_Genewise1.C_930098
GRMZM2G420856
GRMZM2G446648
LOC_Os03g63670
jgi|Sorbi1|4740308|estExt_Genewise1.C_chr_10170
IMGA|CT027663_50.2
AT5G08550
GSVIVP00030283001
fgenesh4_pg.C_LG_VI000177_761867
212
Glyma02g45820
Glyma14g02960
jgi|Phypa1_1|176664|estExt_gwp_gw1.C_180167
AC197118.3_FGP005
GRMZM2G117441
LOC_Os03g37330
jgi|Sorbi1|4755314|estExt_Genewise1.C_chr_40697
jgi|Sorbi1|4877301|estExt_Genewise1Plus.C_chr_30379
IMGA|CU424490_8.1
chr6.CM0037.190.nd
AT1G55460
GSVIVP00017659001
eugene3.00101992_567434
estExt_fgenesh4_pm.C_LG_VIII0198_832545
219
Glyma20g29700
jgi|Phypa1_1|121377|e_gw1.35.320.1
GRMZM2G058966
GRMZM2G074787
LOC_Os04g58640
jgi|Sorbi1|4762881|estExt_Genewise1.C_chr_68638
chr5.CM0148.520.nd
AT4G25550
GSVIVP00010497001
GSVIVP00026791001
gw1.XII.876.1_422416
estExt_Genewise1_v1.C_LG_XV3300_734153
331
Glyma09g28030
Glyma16g32890
jgi|Phypa1_1|57317|fgenesh1_pm.scaffold_61000005
LOC_Os04g18010
jgi|Sorbi1|4760506|estExt_Genewise1.C_chr_61020
LjSGA_049766.1
AT5G51660
GSVIVP00038486001
gw1.XII.1275.1_422815
353
Glyma09g07670
GRMZM2G118104
LOC_Os08g30820
jgi|Sorbi1|5058701|Sb07g019840
CM0601.200.nd
AT4G29820
GSVIVP00016513001
estExt_fgenesh4_pg.C_LG_VI0927_819254
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