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Brassica napus
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Human
Drosophila
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
3.5 Other plant hnRNPs
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
42
Glyma03g26100
Glyma07g13900
Glyma09g37850
Glyma18g48620
jgi|Phypa1_1|162649|estExt_fgenesh1_pg.C_450162
jgi|Phypa1_1|233711|estExt_fgenesh2_pg.C_970090
GRMZM2G055276
GRMZM2G116282
GRMZM2G464401
LOC_Os01g52390
LOC_Os05g51180
jgi|Sorbi1|5002477|estExt_fgenesh1_pg.C_chr_32740
jgi|Sorbi1|5053293|Sb03g027110
jgi|Sorbi1|5061070|Sb09g030400
IMGA|AC151423_6.2
chr1.LjT29L18.90.nd
AT4G16830
AT4G17520
GSVIVP00004557001
GSVIVP00011423001
gw1.40.277.1_286517
estExt_fgenesh4_pm.C_LG_II0615_830328
estExt_fgenesh4_pm.C_LG_III0192_830730
estExt_fgenesh4_pm.C_290040_836308
50
Glyma07g04640
Glyma13g17200
Glyma16g01230
Glyma17g05530
GRMZM2G090908
LOC_Os07g42380
LOC_Os11g40510
jgi|Sorbi1|4824799|e_gw1.5.16200.1
IMGA|AC144483_30.2
AT1G17370
AT3G14100
GSVIVP00016402001
GSVIVP00034047001
gw1.28.172.1_281598
grail3.0037000401_645804
grail3.0158002202_673211
51
Glyma07g38940
Glyma13g27570
Glyma15g11380
Glyma17g01800
GRMZM2G002874
GRMZM2G426591
LOC_Os03g37270
LOC_Os08g09100
jgi|Sorbi1|4742347|estExt_Genewise1.C_chr_13345
IMGA|AC152402_23.2
IMGA|AC202500_12.1
chr4.CM1334.150.nc
chr6.CM0139.780.nd
AT1G11650
AT4G27000
AT5G54900
GSVIVP00027337001
grail3.0055015001_663393
estExt_Genewise1_v1.C_LG_IV1715_713522
estExt_Genewise1_v1.C_LG_XI0522_727110
123
Glyma11g14150
Glyma12g06120
Glyma13g41500
jgi|Phypa1_1|227053|estExt_Genewise1.C_3910068
jgi|Phypa1_1|2572|gw1.219.6.1
jgi|Phypa1_1|2573|gw1.339.2.1
GRMZM2G142557
LOC_Os03g07800
jgi|Sorbi1|4745654|estExt_Genewise1.C_chr_111293
IMGA|AC146330_10.2
AT5G19350
GSVIVP00024620001
gw1.IX.3509.1_203044
148
Glyma04g03950
Glyma14g08840
Glyma17g36330
GRMZM2G168163
GRMZM2G467907
LOC_Os09g28810
jgi|Sorbi1|142506|estExt_fgenesh1_pm.C_chr_20344
IMGA|CU457783_12.1
chr5.CM0089.1140.nc
AT1G47490
AT1G47500
GSVIVP00014763001
gw1.40.622.1_286862
fgenesh4_pm.C_LG_II000590_798901
325
Glyma02g15190
Glyma07g33300
IMGA|AC127168_20.2
IMGA|AC151621_30.2
chr4.CM0079.170.nc
AT1G49600
AT3G19130
GSVIVP00036552001
estExt_Genewise1_v1.C_1300118_744254
fgenesh4_pg.C_LG_IX000590_767539
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