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Brassica napus
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Human
Drosophila
Yeast
small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
3.4 Other hnRNP proteins (with animal homologs)
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
38
Glyma02g05590
Glyma03g25630
Glyma07g13210
Glyma09g38020
Glyma16g24150
Glyma18g48360
jgi|Phypa1_1|135288|e_gw1.118.143.1
jgi|Phypa1_1|140180|e_gw1.164.69.1
jgi|Phypa1_1|151047|e_gw1.327.24.1
GRMZM2G019919
LOC_Os04g45930
jgi|Sorbi1|4888472|estExt_Genewise1Plus.C_chr_66642
IMGA|AC149129_30.2
IMGA|AC149546_31.2
IMGA|AC202489_16.1
LjSGA_046453.1
AT2G44710
GSVIVP00019044001
GSVIVP00036809001
gw1.VII.3894.1_219589
gw1.40.228.1_286468
gw1.II.3649.1_412314
estExt_Genewise1_v1.C_570276_741275
43
Glyma03g35450
Glyma11g18940
Glyma12g09530
GRMZM2G075942
GRMZM2G101867
LOC_Os11g04390
LOC_Os12g04180
jgi|Sorbi1|4818691|e_gw1.5.399.1
IMGA|AC139854_19.2
IMGA|AC157373_30.2
chr1.CM0010.50.nc
AT3G52660
GSVIVP00037346001
gw1.IX.311.1_199846
gw1.XVI.2514.1_256575
gw1.66.466.1_293793
estExt_Genewise1_v1.C_LG_VI2287_717692
61
Glyma02g17090
Glyma03g36650
Glyma10g02700
Glyma19g39300
jgi|Phypa1_1|107590|estExt_fgenesh1_pm.C_1750001
jgi|Phypa1_1|115029|e_gw1.12.73.1
GRMZM2G005459
GRMZM2G177001
LOC_Os01g71200
LOC_Os05g30980
jgi|Sorbi1|4804969|e_gw1.3.20213.1
jgi|Sorbi1|5060409|Sb09g018610
AT1G03457
AT4G03110
GSVIVP00023607001
gw1.XIV.2763.1_246020
fgenesh4_pm.C_LG_II000962_799273
64
Glyma03g42150
Glyma19g44860
jgi|Phypa1_1|217831|estExt_Genewise1.C_1480019
GRMZM2G103430
LOC_Os10g06130
LOC_Os11g14430
jgi|Sorbi1|5058306|Sb07g001490
chr1.CM0105.460.nc
AT4G00830
GSVIVP00026153001
gw1.XIV.1890.1_245147
104
Glyma07g36630
Glyma17g03960
jgi|Phypa1_1|139635|e_gw1.158.95.1
jgi|Phypa1_1|33725|gw1.47.198.1
GRMZM2G065276
LOC_Os09g03610
jgi|Sorbi1|4796076|e_gw1.2.7911.1
IMGA|AC135100_25.2
IMGA|AC174143_20.2
chr4.CM0333.80.nd
AT4G16280
GSVIVP00033168001
gw1.X.653.1_225956
135
Glyma05g24960
Glyma08g08050
jgi|Phypa1_1|118845|e_gw1.26.120.1
jgi|Phypa1_1|136379|e_gw1.128.62.1
AC196125.3_FGP002
LOC_Os03g61990
jgi|Sorbi1|3992267|gw1.7.648.1
jgi|Sorbi1|4996297|estExt_fgenesh1_pg.C_chr_10207
IMGA|AC187356_26.2
chr4.CM0337.690.nc
AT3G26420
GSVIVP00002259001
gw1.I.15.1_171415
237
Glyma11g11060
Glyma12g03260
jgi|Phypa1_1|234643|estExt_fgenesh2_pg.C_1480033
AC233865.1_FGP006
LOC_Os07g19560
LOC_Os09g12800
jgi|Sorbi1|4971626|fgenesh1_pg.C_chr_2002942
LjSGA_030792.1
AT1G50300
GSVIVP00021239001
gw1.X.1182.1_226485
eugene3.00080785_564190
253
Glyma03g40840
Glyma19g43540
jgi|Phypa1_1|42908|gw1.150.78.1
jgi|Phypa1_1|43419|gw1.51.212.1
GRMZM2G417223
LOC_Os03g42900
jgi|Sorbi1|5048512|Sb01g014200
chr1.CM0600.370.nd
AT3G04610
GSVIVP00002157001
estExt_Genewise1_v1.C_LG_XIII1582_729865
279
Glyma09g33090
Glyma16g22290
jgi|Phypa1_1|155362|e_gw1.462.8.1
GRMZM2G159028
LOC_Os11g03890
LOC_Os12g03710
jgi|Sorbi1|149837|estExt_fgenesh1_kg.C_chr_90282
jgi|Sorbi1|5010206|estExt_fgenesh1_pg.C_chr_92393
AT5G66010
GSVIVP00008733001
grail3.0026035501_650984
300
Glyma10g42320
Glyma20g24730
GRMZM2G083783
GRMZM2G161242
LOC_Os03g47800
jgi|Sorbi1|4022300|gw1.1.3592.1
AT1G60650
AT5G04280
GSVIVP00018120001
estExt_Genewise1_v1.C_LG_X2845_725079
319
Glyma03g37950
Glyma19g40570
IMGA|AC135465_37.2
IMGA|AC155099_33.2
LjT32M01.240.nd
AT2G47310
GSVIVP00028139001
fgenesh4_pg.C_LG_II001853_755673
335
Glyma08g45060
Glyma18g07860
GRMZM2G159028
IMGA|CT009558_56.2
chr6.LjT30N23.10.nd
AT3G20890
GSVIVP00024603001
gw1.I.1527.1_172927
estExt_fgenesh4_pg.C_LG_IX1049_821449
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