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Arabidopsis thaliana
Brassica napus
Brassica oleracea
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Human
Drosophila
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
3.3 hnRNP A/B family
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
36
Glyma02g47690
Glyma14g00970
GRMZM2G013065
GRMZM2G014400
GRMZM2G144890
GRMZM2G162954
GRMZM2G346701
LOC_Os07g39560
LOC_Os11g41890
jgi|Sorbi1|4822594|e_gw1.5.16410.1
jgi|Sorbi1|4873496|estExt_Genewise1Plus.C_chr_21097
jgi|Sorbi1|4876207|estExt_Genewise1Plus.C_chr_210045
jgi|Sorbi1|5050686|Sb02g005670
IMGA|AC157981_22.2
IMGA|CR955006_36.2
CM1092.170.nc
chr6.LjT11E14.110.nc
AT3G07810
AT5G47620
GSVIVP00029149001
eugene3.00002010_552695
estExt_fgenesh4_pm.C_LG_XIV0454_834962
44
Glyma02g44330
Glyma03g27290
Glyma14g04480
Glyma19g30250
GRMZM2G132465
LOC_Os01g16090
jgi|Sorbi1|5001729|estExt_fgenesh1_pg.C_chr_31123
IMGA|AC130803_32.2
IMGA|AC149134_50.2
chr2.CM0031.350.nc
AT2G41060
AT3G56860
GSVIVP00017427001
eugene3.00060244_560285
estExt_fgenesh4_pm.C_LG_XVI0055_835360
46
Glyma02g46650
Glyma08g43740
Glyma14g02020
Glyma18g09090
jgi|Phypa1_1|113207|e_gw1.6.161.1
jgi|Phypa1_1|115456|e_gw1.13.176.1
jgi|Phypa1_1|115524|e_gw1.13.177.1
jgi|Phypa1_1|139747|e_gw1.159.40.1
GRMZM2G139090
GRMZM2G550472
jgi|Sorbi1|4861686|e_gw1.10.14564.1
IMGA|AC121232_18.2
chr2.LjT48A12.20.nd
AT4G26650
AT5G55550
GSVIVP00027210001
gw1.119.33.1_264910
gw1.13888.4.1_269887
gw1.44.290.1_289077
eugene3.00012603_550162
eugene3.00110543_568529
94
Glyma06g33940
Glyma12g19050
jgi|Phypa1_1|44234|gw1.70.172.1
jgi|Phypa1_1|46799|gw1.188.84.1
GRMZM2G049866
GRMZM2G117715
LOC_Os01g42820
jgi|Sorbi1|5053329|Sb03g027820
chr3.CM0282.340.nc
AT3G15010
GSVIVP00027793001
gw1.I.5003.1_176403
179
Glyma10g33320
Glyma20g34330
AC198361.3_FGP004
GRMZM2G167505
GRMZM2G176918
LOC_Os10g33230
jgi|Sorbi1|4742757|estExt_Genewise1.C_chr_14280
LjSGA_099738.1
AT4G14300
GSVIVP00020328001
GSVIVP00028534001
gw1.X.4570.1_229873
gw1.VIII.2545.1_421117
213
Glyma13g11650
AC186319.4_FGP002
GRMZM2G050218
LOC_Os08g23120
jgi|Sorbi1|4879176|estExt_Genewise1Plus.C_chr_37376
IMGA|CT030180_20.2
LjSGA_018192.1
AT3G13224
GSVIVP00029068001
GSVIVP00033419001
GSVIVP00038668001
gw1.I.4864.1_176264
267
Glyma13g42480
GRMZM2G139643
GRMZM2G167356
LOC_Os02g12850
jgi|Sorbi1|5054910|Sb04g007860
AT1G17640
GSVIVP00034188001
352
Glyma05g09040
Glyma16g07660
Glyma19g00530
Glyma19g10300
chr2.LjT32G18.130.nc
AT5G40490
GSVIVP00020662001
gw1.I.2580.1_173980
396
Glyma04g05070
Glyma06g05150
LjSGA_028796.1
AT1G58470
eugene3.00140050_572005
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