Help
Feedback
PlantGDB Site Search
Sequence ID
Sequence Keyword
at PlantGDB
Home
Sequence
-Overview -
Download
Search
-Overview-
Select Species...
Arabidopsis thaliana
Brassica napus
Brassica oleracea
Chlamydomonas reinhardtii
Cucumis sativus
Glycine max
Gossypium hirsutum
Hordeum vulgare
Medicago truncatula
Oryza sativa
Physcomitrella patens
Setaria italica
Sorghum bicolor
Triticum aestivum
Vitis vinifera
Zea mays
EST Assemb
-Overview -
Select Species...
Arabidopsis thaliana
Brassica napus
Brassica oleracea
Chlamydomonas reinhardtii
Cucumis sativus
Glycine max
Gossypium hirsutum
Hordeum vulgare
Medicago truncatula
Oryza sativa
Physcomitrella patens
Setaria italica
Sorghum bicolor
Triticum aestivum
Vitis vinifera
Zea mays
GSS Assemb
FTP Server
Genomes
-Overview-
Dicots
AtGDB
- Arabidopsis thaliana
BrGDB
- Brassica rapa
CpGDB
- Carica papaya
CsGDB
- Cucumis sativus
GhGDB
- Gossypium hirsutum
GmGDB
- Glycine max
LjGDB
- Lotus japonicus
MeGDB
- Manihot esculenta
MtGDB
- Medicago truncatula
MgGDB
- Mimulus guttatus
PeGDB
- Prunus persica
PtGDB
- Populus trichocarpa
RcGDB
- Ricinus communis
SlGDB
- Solanum lycopersicum
StGDB
- Solanum tuberosum
VvGDB
- Vitis vinifera
Monocots
BdGDB
- Brachypodium distachyon
HvGDB
- Hordeum vulgare
OsGDB
- Oryza sativa
SbGDB
- Sorghum bicolor
SiGDB
- Setaria italica
TaGDB
- Triticum aestivum
ZmGDB
- Zea mays
Other
CrGDB
- Chlamydomonas reinhardtii
PpGDB
- Physcomitrella patens
SmGDB
- Selaginella moellendorffii
VcGDB
- Volvox carteri
Tools
-Overview-
BioExtract
BLAST
DAS
GeneSeqer
GenomeThreader
MuSeqBox
PatternSearch
ProbeMatch
TE nest
yrGATE
Datasets
- Overview -
ASIP
PLEXdb
RescueMu
RFLP/FLIS
SRGD
UniformMu
Outreach
Plant Genome Outreach Portal (PGROP)
Outreach to Native Americans
Help
Help
Community Annotation
Genome Browsers
TableMaker
Tutorials
Annotation Tutorial
Annotation Lessons
GeneSeqer Tutorial
About Us
News
Tour
F.A.Q.
Site Map
Publications
Links
Acknowledgments
Overview
Data & Methods
BLAST
Old Version
Database
Overview
Human
Drosophila
Yeast
small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
3.2 Glycine-Rich RNA binding protein
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
10
Glyma05g00400
Glyma08g26900
Glyma11g36580
Glyma17g08630
Glyma18g00480
Glyma18g50150
jgi|Phypa1_1|167311|estExt_fgenesh1_pg.C_1430007
jgi|Phypa1_1|208328|estExt_Genewise1.C_450174
jgi|Phypa1_1|37849|gw1.118.111.1
jgi|Phypa1_1|37877|gw1.118.113.1
GRMZM2G009448
GRMZM2G042118
GRMZM2G131167
GRMZM2G150521
LOC_Os01g68790
LOC_Os07g41120
LOC_Os10g17454
LOC_Os12g31800
jgi|Sorbi1|4168933|gw1.3.21003.1
jgi|Sorbi1|4765916|estExt_Genewise1.C_chr_84994
IMGA|AC146705_26.2
LjT12A09.50.nd
chr1.CM0410.300.nd
AT3G23830
AT4G13850
AT5G61030
GSVIVP00016201001
gw1.82.38.1_296498
gw1.XII.19.1_421559
grail3.5873000103_679310
estExt_Genewise1_v1.C_LG_I3371_707174
estExt_fgenesh4_pm.C_880007_836867
30
Glyma06g01470
Glyma11g12480
Glyma11g12490
Glyma11g12510
jgi|Phypa1_1|16354|gw1.123.70.1
jgi|Phypa1_1|19797|gw1.136.87.1
jgi|Phypa1_1|73609|fgenesh1_pg.scaffold_42000167
GRMZM2G080603
GRMZM2G165901
LOC_Os03g46770
LOC_Os12g43600
jgi|Sorbi1|129652|fgenesh1_pm.C_chr_8000625
jgi|Sorbi1|147234|estExt_fgenesh1_kg.C_chr_10212
IMGA|AC134242_17.2
IMGA|AC134242_43.2
chr1.CM0178.490.nc
chr3.CM0091.630.nd
chr3.CM0091.670.nd
AT2G21660
AT4G39260
GSVIVP00036381001
gw1.IX.1795.1_201330
estExt_Genewise1_v1.C_LG_IV0527_712972
Loading Help Page...Thanks for your patience!
Loading Video...Thanks for your patience!
Loading Image...Thanks for your patience!