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Arabidopsis thaliana
Brassica napus
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Human
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
3.1 SR protein Kinase
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
19
Glyma03g33100
Glyma04g36360
Glyma05g02740
Glyma06g18530
Glyma17g13440
GRMZM2G063792
GRMZM2G179308
GRMZM2G300990
GRMZM2G386991
LOC_Os01g62080
LOC_Os12g27520
jgi|Sorbi1|4874001|estExt_Genewise1Plus.C_chr_22672
jgi|Sorbi1|4883508|estExt_Genewise1Plus.C_chr_46739
jgi|Sorbi1|5002842|estExt_fgenesh1_pg.C_chr_33373
IMGA|CT573420_35.2
chr6.LjT34N14.20.nd
AT3G53570
AT4G24740
GSVIVP00023119001
GSVIVP00030742001
gw1.XII.1485.1_423025
eugene3.00160734_576599
fgenesh4_pm.C_LG_VI000611_802264
estExt_fgenesh4_pg.C_LG_X0554_821865
estExt_fgenesh4_pg.C_LG_XV0599_824707
48
Glyma10g07430
Glyma12g08900
Glyma12g30440
Glyma13g21320
Glyma17g05480
jgi|Phypa1_1|22378|gw1.29.50.1
jgi|Phypa1_1|22627|gw1.38.75.1
jgi|Phypa1_1|2613|gw1.248.16.1
GRMZM2G009843
GRMZM2G171987
LOC_Os03g53720
jgi|Sorbi1|5048143|Sb01g008130
IMGA|AC174301_13.2
chr1.CM0033.1010.nc
AT3G44850
AT3G53030
AT5G22840
GSVIVP00021715001
GSVIVP00022115001
gw1.28.960.1_282386
eugene3.00090181_556921
fgenesh4_pg.C_scaffold_66000047_782432
69
Glyma01g36260
Glyma09g33020
Glyma11g09180
Glyma16g21430
AC233910.1_FGP010
GRMZM2G052434
GRMZM2G162086
LOC_Os07g28930
LOC_Os09g37949
jgi|Sorbi1|5000420|estExt_fgenesh1_pg.C_chr_22995
jgi|Sorbi1|5051595|Sb02g032180
IMGA|CR932967_30.2
IMGA|CT033770_36.2
LjSGA_015537.1
AT2G17530
AT4G35500
GSVIVP00019335001
eugene3.01860014_586007
fgenesh4_pg.C_LG_V000420_760368
103
Glyma06g08480
jgi|Phypa1_1|133077|e_gw1.100.30.1
jgi|Phypa1_1|136875|e_gw1.132.89.1
jgi|Phypa1_1|227517|estExt_Genewise1.C_4250007
GRMZM2G094039
GRMZM2G366935
LOC_Os01g40840
jgi|Sorbi1|4752363|estExt_Genewise1.C_chr_37033
IMGA|AC135413_25.2
IMGA|CR956430_21.2
chr1.LjT35C22.10.nc
AT4G32660
GSVIVP00032520001
gw1.VI.2070.1_417697
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