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Human
Drosophila
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
2.7 Second step splicing factors
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
177
Glyma03g31130
Glyma19g33970
jgi|Phypa1_1|198877|estExt_gwp_gw1.C_3420016
GRMZM2G034651
GRMZM2G034709
GRMZM2G046916
GRMZM2G053622
GRMZM2G053642
GRMZM2G073041
LOC_Os07g38420
jgi|Sorbi1|5051876|Sb02g036950
chr4.LjT06I07.140.nd
AT1G03140
GSVIVP00023725001
eugene3.00051177_559562
178
Glyma10g33580
Glyma20g34010
jgi|Phypa1_1|99420|fgenesh1_pg.scaffold_390000001
AC217887.3_FGP005
GRMZM2G085825
LOC_Os03g27970
jgi|Sorbi1|4870494|estExt_Genewise1Plus.C_chr_18599
IMGA|AC158374_19.2
LjSGA_009457.2
LjSGA_091062.1
AT1G10580
GSVIVP00028826001
gw1.X.4645.1_229948
eugene3.00081601_565006
230
Glyma07g16120
Glyma18g40090
jgi|Phypa1_1|176942|estExt_gwp_gw1.C_200137
GRMZM2G057026
LOC_Os08g03390
jgi|Sorbi1|5058346|Sb07g002300
LjT09J10.40.nc
AT1G65660
AT4G37120
GSVIVP00020268001
eugene3.00150272_574877
fgenesh4_pg.C_LG_XII000590_772815
281
Glyma12g17530
Glyma20g27820
jgi|Phypa1_1|122328|e_gw1.39.102.1
GRMZM2G090168
GRMZM2G136014
LOC_Os02g21490
jgi|Sorbi1|5059344|Sb08g003460
LjSGA_021138.1
AT5G54520
GSVIVP00027473001
estExt_Genewise1_v1.C_LG_XIII2644_730261
358
Glyma05g27850
jgi|Phypa1_1|188805|estExt_gwp_gw1.C_1240010
GRMZM2G000371
LOC_Os11g20554
jgi|Sorbi1|5010564|estExt_fgenesh1_pg.C_chr_100539
AT1G27900
GSVIVP00035061001
fgenesh4_pm.C_LG_X000172_804866
359
Glyma01g07530
Glyma02g13170
jgi|Phypa1_1|131461|e_gw1.89.8.1
GRMZM2G300375
LOC_Os06g09280
AT1G26370
GSVIVP00030750001
gw1.VIII.2834.1_421406
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