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Arabidopsis thaliana
Brassica napus
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Human
Drosophila
Yeast
small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
2.6 Exon junction complex (EJC) proteins
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
20
Glyma02g10380
Glyma11g15040
Glyma12g07010
Glyma13g40930
jgi|Phypa1_1|112481|e_gw1.4.224.1
jgi|Phypa1_1|129553|e_gw1.77.52.1
jgi|Phypa1_1|172894|estExt_fgenesh1_pg.C_3900014
jgi|Phypa1_1|57202|fgenesh1_pm.scaffold_57000010
GRMZM2G157329
LOC_Os03g17010
LOC_Os11g01020
LOC_Os12g01010
jgi|Sorbi1|4998360|estExt_fgenesh1_pg.C_chr_14037
IMGA|AC202518_8.1
LjSGA_065336.1
LjT41B11.50.nd
AT5G02530
AT5G59950
GSVIVP00024369001
gw1.226.19.1_279773
gw1.261.1.1_280851
estExt_fgenesh4_kg.C_LG_X0079_814194
estExt_fgenesh4_pg.C_LG_I1776_815363
29
Glyma04g07180
Glyma06g07280
Glyma07g03530
Glyma08g22570
jgi|Phypa1_1|188774|estExt_gwp_gw1.C_1230109
jgi|Phypa1_1|96766|fgenesh1_pg.scaffold_311000013
AC203862.4_FGP003
GRMZM2G088218
LOC_Os01g36890
LOC_Os01g36920
jgi|Sorbi1|4769245|estExt_Genewise1.C_chr_98134
IMGA|AC145331_38.2
IMGA|AC147471_75.2
IMGA|AC150787_35.2
chr5.CM0345.1300.nc
AT5G11170
AT5G11200
GSVIVP00000354001
GSVIVP00032637001
eugene3.00180420_578196
estExt_fgenesh4_pg.C_LG_VI1784_819597
85
Glyma11g33670
Glyma18g04530
GRMZM2G171921
LOC_Os08g33120
jgi|Sorbi1|5058741|Sb07g020860
IMGA|CT963094_22.2
AT1G66260
AT5G37720
GSVIVP00022454001
gw1.IV.3602.1_198513
fgenesh4_pg.C_LG_II002243_756063
134
Glyma09g05810
Glyma15g17060
jgi|Phypa1_1|109347|estExt_fgenesh1_pm.C_5190002
jgi|Phypa1_1|60709|fgenesh1_pm.scaffold_275000006
AC208348.3_FGP005
GRMZM2G018947
GRMZM2G133764
LOC_Os01g45190
LOC_Os03g36930
jgi|Sorbi1|4758664|estExt_Genewise1.C_chr_49685
AT1G51380
AT3G19760
GSVIVP00037338001
gw1.V.3381.1_207980
estExt_fgenesh4_pm.C_LG_VII0278_832316
145
Glyma11g14420
Glyma12g06360
jgi|Phypa1_1|182200|estExt_gwp_gw1.C_550077
jgi|Phypa1_1|192539|estExt_gwp_gw1.C_1810080
LOC_Os03g16369
jgi|Sorbi1|4998392|estExt_fgenesh1_pg.C_chr_14086
IMGA|AC202498_22.1
chr3.CM0792.150.nd
AT2G29210
GSVIVP00024267001
gw1.I.1146.1_172546
gw1.IX.4052.1_203587
155
Glyma03g25790
Glyma07g13730
jgi|Phypa1_1|109861|estExt_fgenesh1_kg.C_630004
jgi|Phypa1_1|188860|estExt_gwp_gw1.C_1250022
GRMZM2G000560
LOC_Os12g18880
jgi|Sorbi1|149230|estExt_fgenesh1_kg.C_chr_70009
IMGA|CU024868_41.2
chr3.LjT40N08.180.nd
AT1G02140
GSVIVP00014203001
eugene3.00021278_551963
estExt_Genewise1_v1.C_400263_740188
174
Glyma08g18310
Glyma15g40710
jgi|Phypa1_1|105411|estExt_fgenesh1_pm.C_350034
jgi|Phypa1_1|166555|estExt_fgenesh1_pg.C_1180104
GRMZM2G060540
GRMZM2G133926
LOC_Os01g72890
jgi|Sorbi1|4977059|fgenesh1_pg.C_chr_3004174
LjSGA_010297.2
AT1G16610
GSVIVP00025760001
estExt_fgenesh4_pg.C_LG_XI1221_823076
209
Glyma01g43710
Glyma11g01770
jgi|Phypa1_1|119944|e_gw1.31.212.1
jgi|Phypa1_1|137270|e_gw1.136.78.1
AC233958.1_FGP002
GRMZM2G172399
LOC_Os05g04850
jgi|Sorbi1|146212|estExt_fgenesh1_pm.C_chr_90084
jgi|Sorbi1|4752028|estExt_Genewise1.C_chr_33529
chr2.CM0018.160.nd
AT1G51510
GSVIVP00034829001
gw1.I.755.1_172155
gw1.IX.3616.1_203151
268
Glyma08g19640
Glyma15g05410
jgi|Phypa1_1|150277|e_gw1.313.11.1
jgi|Phypa1_1|179538|estExt_gwp_gw1.C_360097
GRMZM2G002558
LOC_Os03g49520
jgi|Sorbi1|4996883|estExt_fgenesh1_pg.C_chr_11136
IMGA|AC157375_13.2
IMGA|AC189276_1.1
AT1G15200
gw1.I.9946.1_181346
gw1.III.2287.1_415184
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