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Arabidopsis thaliana
Brassica napus
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Human
Drosophila
Yeast
small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
2.5 Proteins specific for BDU1 complex
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
45
Glyma01g20810
Glyma10g42220
Glyma20g24820
jgi|Phypa1_1|144337|e_gw1.213.69.1
jgi|Phypa1_1|146901|e_gw1.250.5.1
GRMZM2G147811
GRMZM2G151236
LOC_Os12g44330
jgi|Sorbi1|5059895|Sb08g023260
LjSGA_025358.1
AT1G13350
AT3G25840
AT3G53640
GSVIVP00030321001
eugene3.00081111_564516
87
Glyma04g04590
Glyma05g21580
Glyma11g05520
Glyma17g18140
jgi|Phypa1_1|192584|estExt_gwp_gw1.C_1820056
GRMZM2G149708
GRMZM2G159330
LOC_Os07g22220
jgi|Sorbi1|5056978|Sb06g001810
IMGA|CT573077_44.2
chr2.CM0250.90.nc
AT5G67320
GSVIVP00019608001
gw1.V.4204.1_208803
estExt_Genewise1_v1.C_2050013_746796
127
Glyma10g35670
Glyma20g31870
jgi|Phypa1_1|167323|estExt_fgenesh1_pg.C_1430031
jgi|Phypa1_1|233852|estExt_fgenesh2_pg.C_1080026
jgi|Phypa1_1|64527|fgenesh1_pg.scaffold_2000404
jgi|Phypa1_1|76816|fgenesh1_pg.scaffold_61000017
GRMZM2G089406
GRMZM2G447745
LOC_Os05g03550
jgi|Sorbi1|5060026|Sb09g002290
IMGA|AC126015_4.2
LjSGA_013740.2
LjSGA_056209.1
AT3G52250
GSVIVP00018224001
eugene3.00102138_567580
estExt_fgenesh4_pg.C_LG_VIII0326_820268
194
Glyma10g04300
Glyma13g18470
jgi|Phypa1_1|131965|e_gw1.91.14.1
GRMZM2G416069
jgi|Sorbi1|4835410|e_gw1.7.16032.1
LjT07J23.90.nd
chr5.LjT15N12.30.nc
AT3G54670
GSVIVP00028583001
eugene3.00051316_559701
293
Glyma02g22520
jgi|Phypa1_1|146595|e_gw1.245.68.1
GRMZM2G168685
LOC_Os01g68760
jgi|Sorbi1|5054249|Sb03g043740
LjSGA_058838.1
AT2G41020
GSVIVP00023325001
grail3.0024018601_652518
301
Glyma01g34940
Glyma02g18640
Glyma10g13810
jgi|Phypa1_1|147981|e_gw1.269.82.1
GRMZM2G080120
LOC_Os06g11170
jgi|Sorbi1|149933|estExt_fgenesh1_kg.C_chr_100089
IMGA|AC151621_39.2
chr4.CM0079.120.nd
AT1G49590
estExt_fgenesh4_pg.C_LG_IX0581_821220
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