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Human
Drosophila
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
2.4 35S U5 associated proteins
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
0
Glyma02g09400
Glyma02g10320
Glyma02g36700
Glyma03g32850
Glyma05g36600
Glyma05g36620
Glyma07g26550
Glyma08g02940
Glyma08g02960
Glyma11g14950
Glyma12g06910
Glyma13g19330
Glyma13g29580
Glyma13g29590
Glyma15g09420
Glyma15g09430
Glyma15g10280
Glyma17g08020
Glyma18g52470
Glyma18g52480
Glyma18g52610
Glyma18g52650
Glyma18g52760
Glyma19g35560
jgi|Phypa1_1|158543|estExt_fgenesh1_pg.C_20112
jgi|Phypa1_1|207434|estExt_Genewise1.C_390053
jgi|Phypa1_1|219762|estExt_Genewise1.C_1810001
jgi|Phypa1_1|226216|estExt_Genewise1.C_3510021
jgi|Phypa1_1|228249|estExt_Genewise1.C_5260001
jgi|Phypa1_1|230273|fgenesh2_pg.scaffold_97000105
jgi|Phypa1_1|58148|fgenesh1_pm.scaffold_91000017
jgi|Phypa1_1|95804|fgenesh1_pg.scaffold_288000014
jgi|Phypa1_1|96217|fgenesh1_pg.scaffold_298000015
AC209784.3_FGP007
GRMZM2G056039
GRMZM2G066902
GRMZM2G106429
GRMZM2G145275
GRMZM2G310431
GRMZM2G340251
GRMZM2G351416
GRMZM2G366532
GRMZM2G415007
GRMZM2G428391
GRMZM2G471196
LOC_Os01g62290
LOC_Os02g02410
LOC_Os03g16860
LOC_Os03g16880
LOC_Os03g16920
LOC_Os03g50250
LOC_Os03g60620
LOC_Os05g30480
LOC_Os05g35400
LOC_Os05g38530
LOC_Os08g09770
LOC_Os11g08440
LOC_Os11g08445
LOC_Os11g08460
LOC_Os11g08470
LOC_Os11g47760
jgi|Sorbi1|126426|fgenesh1_pm.C_chr_3001457
jgi|Sorbi1|128345|fgenesh1_pm.C_chr_6000097
jgi|Sorbi1|4744818|estExt_Genewise1.C_chr_110019
jgi|Sorbi1|4755071|estExt_Genewise1.C_chr_40208
jgi|Sorbi1|4780164|e_gw1.1.16792.1
jgi|Sorbi1|4780478|e_gw1.1.16730.1
jgi|Sorbi1|4880576|estExt_Genewise1Plus.C_chr_39770
jgi|Sorbi1|4892998|estExt_Genewise1Plus.C_chr_85816
jgi|Sorbi1|4967491|fgenesh1_pg.C_chr_1004093
jgi|Sorbi1|4967492|fgenesh1_pg.C_chr_1004094
jgi|Sorbi1|4967498|fgenesh1_pg.C_chr_1004100
jgi|Sorbi1|4998368|estExt_fgenesh1_pg.C_chr_14054
jgi|Sorbi1|5030130|Sb01g039450
jgi|Sorbi1|5030132|Sb01g039470
jgi|Sorbi1|5048296|Sb01g010460
jgi|Sorbi1|5049705|Sb01g039530
jgi|Sorbi1|5060633|Sb09g022580
IMGA|AC127167_39.2
IMGA|AC127167_41.2
IMGA|AC127167_44.2
IMGA|AC127167_45.2
IMGA|AC137996_18.2
IMGA|AC137996_20.2
IMGA|AC137996_23.2
IMGA|AC137996_25.2
IMGA|AC137996_26.2
IMGA|AC137996_27.2
IMGA|AC137996_40.2
IMGA|AC137996_52.2
IMGA|AC137996_53.2
IMGA|AC137996_65.2
IMGA|AC137996_7.2
IMGA|AC137996_9.2
IMGA|AC138130_37.2
IMGA|AC140546_4.2
IMGA|AC140547_7.2
IMGA|AC145449_27.2
IMGA|AC146757_44.2
IMGA|AC146757_74.2
IMGA|AC149204_23.2
IMGA|AC149204_27.2
IMGA|AC150446_33.2
IMGA|AC150776_9.2
IMGA|AC155888_17.2
IMGA|AC155895_2.2
IMGA|AC155895_3.2
IMGA|AC171167_13.2
IMGA|AC171167_17.2
IMGA|AC171167_18.2
IMGA|AC171167_29.2
IMGA|AC171167_32.2
IMGA|AC171167_34.2
IMGA|AC171167_5.2
IMGA|AC171167_6.2
IMGA|AC171619_12.2
IMGA|AC174467_36.2
IMGA|AC184161_21.2
IMGA|AC188991_10.1
IMGA|AC188991_15.1
IMGA|AC188991_23.1
IMGA|AC188991_7.1
IMGA|AC195561_15.1
IMGA|CT963112_21.2
LjSGA_009490.3
LjSGA_012865.1
LjSGA_019550.1
LjSGA_020408.2
LjSGA_024670.1
LjSGA_025770.1
LjSGA_028864.1
LjSGA_030747.1
LjSGA_042820.1
LjSGA_048515.1
LjSGA_051144.1
LjSGA_066441.1
LjSGA_077967.1
LjT41B11.10.nd
LjT41B11.100.nd
LjT41B11.200.nd
chr1.CM0133.1430.nc
chr1.CM0147.490.nc
chr1.LjT14I13.210.nd
chr1.LjT14I13.240.nd
chr1.LjT16O03.90.nd
chr2.CM0120.590.nd
chr2.CM0373.840.nc
chr2.CM0373.850.nc
chr3.CM0452.230.nd
chr4.CM0179.510.nd
chr6.CM0118.540.nd
chr6.CM0118.670.nc
AT1G09080
AT1G16030
AT1G56410
AT3G09440
AT3G12580
AT5G02490
AT5G02500
AT5G28540
AT5G42020
GSVIVP00006687001
GSVIVP00017185001
GSVIVP00018481001
GSVIVP00018506001
GSVIVP00021301001
GSVIVP00022731001
GSVIVP00024351001
GSVIVP00024357001
GSVIVP00037232001
gw1.261.22.1_280872
gw1.261.46.1_280896
gw1.261.59.1_280909
eugene3.00080482_563887
eugene3.00080489_563894
eugene3.00120231_569578
eugene3.00130164_570800
eugene3.02080008_587191
eugene3.02080009_587192
grail3.0261001101_675629
estExt_Genewise1_v1.C_LG_III0234_711719
fgenesh4_pg.C_LG_VIII000455_765441
fgenesh4_pm.C_LG_III000644_800179
estExt_fgenesh4_pg.C_LG_X1852_822482
estExt_fgenesh4_pm.C_LG_I0291_829431
estExt_fgenesh4_pm.C_LG_VIII0195_832542
47
Glyma05g28440
Glyma08g11450
jgi|Phypa1_1|107211|estExt_fgenesh1_pm.C_1390014
jgi|Phypa1_1|177335|estExt_gwp_gw1.C_220243
GRMZM2G020728
GRMZM2G053801
GRMZM2G095670
GRMZM2G099007
LOC_Os01g63890
LOC_Os04g55290
LOC_Os05g37390
jgi|Sorbi1|148355|estExt_fgenesh1_kg.C_chr_30344
jgi|Sorbi1|149745|estExt_fgenesh1_kg.C_chr_90190
IMGA|AC146585_4.2
chr5.CM0040.250.nc
AT4G21110
GSVIVP00019780001
gw1.IX.738.1_200273
gw1.66.52.1_293379
66
Glyma01g43370
Glyma11g02100
jgi|Phypa1_1|106369|estExt_fgenesh1_pm.C_740015
jgi|Phypa1_1|158739|estExt_fgenesh1_pg.C_50158
GRMZM2G100448
LOC_Os05g22260
LOC_Os06g33250
jgi|Sorbi1|5048399|Sb01g012080
jgi|Sorbi1|5060508|Sb09g020460
IMGA|AC166146_3.2
IMGA|AC202353_26.1
IMGA|CU424495_8.1
chr1.CM0318.70.nd
chr2.CM0099.310.nd
AT3G13210
AT5G41770
AT5G45990
GSVIVP00002461001
eugene3.00031096_554463
fgenesh4_pm.C_LG_I000327_797324
67
Glyma04g00700
Glyma06g00740
Glyma11g10480
Glyma12g02790
jgi|Phypa1_1|170556|estExt_fgenesh1_pg.C_2490037
GRMZM2G162388
GRMZM2G326111
LOC_Os02g02890
jgi|Sorbi1|148470|estExt_fgenesh1_kg.C_chr_40018
jgi|Sorbi1|148600|estExt_fgenesh1_kg.C_chr_40157
IMGA|CU024876_25.2
LjSGA_031559.1
chr1.CM0231.140.nd
AT2G16600
AT2G21130
AT4G34870
AT4G38740
GSVIVP00014412001
estExt_fgenesh4_kg.C_LG_IV0063_813818
estExt_fgenesh4_pg.C_LG_II0204_816014
estExt_fgenesh4_pg.C_LG_V1539_818813
estExt_fgenesh4_pg.C_LG_IX0365_821113
119
Glyma10g26870
Glyma20g21330
jgi|Phypa1_1|183278|estExt_gwp_gw1.C_640096
jgi|Phypa1_1|203375|estExt_Genewise1.C_140201
GRMZM2G037698
LOC_Os10g32880
jgi|Sorbi1|4869341|estExt_Genewise1Plus.C_chr_14327
IMGA|AC146759_5.2
LjSGA_061630.1
AT1G04510
AT2G33340
GSVIVP00020342001
eugene3.00100377_565819
estExt_fgenesh4_pg.C_LG_VIII1499_820827
121
Glyma13g31940
Glyma15g07380
jgi|Phypa1_1|234525|estExt_fgenesh2_pg.C_1390014
GRMZM2G060160
GRMZM2G356894
LOC_Os01g49270
LOC_Os06g12910
LOC_Os07g44970
jgi|Sorbi1|4859424|e_gw1.10.2200.1
jgi|Sorbi1|5052146|Sb02g041110
LjSGA_062711.1
AT5G28740
GSVIVP00009727001
estExt_Genewise1_v1.C_LG_IV2251_713683
133
Glyma02g47360
Glyma13g03760
Glyma14g01390
Glyma20g10260
jgi|Phypa1_1|185655|estExt_gwp_gw1.C_840209
GRMZM2G160863
LOC_Os06g07350
LOC_Os07g18050
jgi|Sorbi1|5004618|estExt_fgenesh1_pg.C_chr_42560
jgi|Sorbi1|5010550|estExt_fgenesh1_pg.C_chr_100509
IMGA|AC146743_25.2
LjSGA_011702.1
AT1G07360
AT2G29580
GSVIVP00024168001
gw1.IX.3922.1_203457
eugene3.00091234_557974
166
Glyma05g34090
Glyma08g05590
jgi|Phypa1_1|232960|estExt_fgenesh2_kg.C_780006
GRMZM2G419085
LOC_Os01g16010
jgi|Sorbi1|4878266|estExt_Genewise1Plus.C_chr_32159
IMGA|AC150743_42.2
chr4.CM0042.2070.nc
AT3G18165
GSVIVP00017780001
eugene3.00150362_574967
197
Glyma09g04910
Glyma15g15960
jgi|Phypa1_1|140736|e_gw1.169.38.1
jgi|Phypa1_1|173015|estExt_fgenesh1_pg.C_4020035
GRMZM2G017089
LOC_Os03g21990
jgi|Sorbi1|128279|fgenesh1_pm.C_chr_6000031
chr6.LjT35H04.230.nd
AT3G16650
AT4G15900
GSVIVP00010038001
estExt_Genewise1_v1.C_LG_X3939_725686
203
Glyma10g42810
Glyma20g24190
jgi|Phypa1_1|117104|e_gw1.19.97.1
GRMZM2G102447
GRMZM2G308689
LOC_Os06g49740
jgi|Sorbi1|4771818|estExt_Genewise1.C_chr_108163
LjSGA_027768.1
AT2G16860
GSVIVP00036134001
estExt_fgenesh4_pm.C_LG_IV0542_831321
224
Glyma17g15050
jgi|Phypa1_1|88416|fgenesh1_pg.scaffold_169000061
GRMZM2G154278
LOC_Os06g01700
jgi|Sorbi1|4750616|estExt_Genewise1.C_chr_30298
jgi|Sorbi1|4769340|estExt_Genewise1.C_chr_100100
IMGA|AC138087_10.2
IMGA|AC183430_4.2
chr4.CM0281.130.nc
AT3G13200
GSVIVP00033426001
eugene3.00012679_550238
228
Glyma01g01190
Glyma16g08450
jgi|Phypa1_1|182359|estExt_gwp_gw1.C_560076
GRMZM2G478709
LOC_Os02g52250
jgi|Sorbi1|4884723|estExt_Genewise1Plus.C_chr_48746
IMGA|AC192958_8.1
chr3.CM0261.280.nc
AT1G77180
GSVIVP00016680001
eugene3.00180746_578522
fgenesh4_pg.C_scaffold_211000011_787442
238
Glyma10g30870
Glyma20g36600
jgi|Phypa1_1|228394|estExt_Genewise1.C_6410001
AC203535.4_FGP001
LOC_Os04g28090
jgi|Sorbi1|4881210|estExt_Genewise1Plus.C_chr_310787
jgi|Sorbi1|4892685|estExt_Genewise1Plus.C_chr_84804
chr1.CM0600.100.nd
AT1G09770
GSVIVP00002219001
gw1.XIX.527.1_248127
eugene3.00130457_571093
254
Glyma18g05210
jgi|Phypa1_1|96034|fgenesh1_pg.scaffold_294000001
GRMZM2G043331
LOC_Os02g58460
jgi|Sorbi1|5056203|Sb04g038390
IMGA|AC137821_32.2
IMGA|AC171395_9.2
LjSGA_011794.1
AT3G02710
GSVIVP00002674001
GSVIVP00023517001
257
Glyma0048s00340
Glyma20g00260
jgi|Phypa1_1|200891|estExt_gwp_gw1.C_4750024
GRMZM2G410479
LOC_Os03g26960
jgi|Sorbi1|5049334|Sb01g033760
IMGA|AC151709_31.2
LjT39F13.60.nc
AT2G38770
GSVIVP00005499001
GSVIVP00033709001
eugene3.00031640_555007
317
Glyma10g31720
Glyma20g35890
jgi|Phypa1_1|8736|gw1.290.18.1
GRMZM2G055682
LOC_Os06g51420
jgi|Sorbi1|4771976|estExt_Genewise1.C_chr_108410
LjSGA_028354.1
AT3G05070
GSVIVP00013867001
estExt_fgenesh4_pg.C_LG_IV0304_817783
341
Glyma03g35620
Glyma19g38260
jgi|Phypa1_1|104695|estExt_fgenesh1_pm.C_120049
LOC_Os08g44520
jgi|Sorbi1|4764506|estExt_Genewise1.C_chr_77032
AT2G36130
GSVIVP00021565001
estExt_fgenesh4_pm.C_LG_XVI0258_835479
355
Glyma09g18830
jgi|Phypa1_1|107405|estExt_fgenesh1_pm.C_1580013
GRMZM2G024451
LOC_Os02g39050
jgi|Sorbi1|4756863|estExt_Genewise1.C_chr_46824
IMGA|CR931743_20.2
chr3.CM0282.580.nc
AT3G18790
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