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Arabidopsis thaliana
Brassica napus
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Human
Drosophila
Yeast
small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
2.2 SR protein
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
5
Glyma03g37240
Glyma19g39850
Glyma20g38060
jgi|Phypa1_1|113630|e_gw1.7.233.1
jgi|Phypa1_1|140978|e_gw1.173.63.1
jgi|Phypa1_1|205547|estExt_Genewise1.C_280136
GRMZM2G331811
GRMZM2G436092
LOC_Os03g22380
LOC_Os05g30140
LOC_Os07g47630
jgi|Sorbi1|147417|estExt_fgenesh1_kg.C_chr_10401
IMGA|AC134522_50.2
IMGA|AC144541_44.2
chr5.CM0299.260.nc
AT1G02840
AT1G09140
AT4G02430
GSVIVP00027992001
gw1.II.749.1_409414
gw1.XII.145.1_421685
fgenesh4_pg.C_LG_XIII000080_773626
fgenesh4_pm.C_scaffold_133000019_811208
6
Glyma08g39830
Glyma14g17930
Glyma17g29080
Glyma18g18860
jgi|Phypa1_1|143810|e_gw1.207.127.1
jgi|Phypa1_1|151194|e_gw1.332.33.1
GRMZM2G027105
GRMZM2G151923
LOC_Os02g39720
LOC_Os06g08840
jgi|Sorbi1|5010612|estExt_fgenesh1_pg.C_chr_100625
IMGA|CR936368_46.2
LjSGA_021019.1
AT1G23860
AT2G24590
AT4G31580
GSVIVP00028848001
gw1.XIX.900.1_248500
gw1.XVIII.2163.1_261622
eugene3.01470005_583120
18
Glyma05g24540
Glyma08g07730
jgi|Phypa1_1|122960|e_gw1.42.218.1
jgi|Phypa1_1|172957|estExt_fgenesh1_pg.C_3970019
GRMZM2G016296
GRMZM2G025281
GRMZM2G077823
LOC_Os07g43050
LOC_Os08g37960
jgi|Sorbi1|4765088|estExt_Genewise1.C_chr_78077
jgi|Sorbi1|5000848|estExt_fgenesh1_pg.C_chr_23706
IMGA|AC144459_24.2
chr4.CM0182.440.nc
AT5G64200
GSVIVP00000274001
GSVIVP00015240001
grail3.0067008905_645719
estExt_Genewise1_v1.C_LG_II0296_709848
24
Glyma03g33260
Glyma03g33270
Glyma19g35980
Glyma19g35990
GRMZM2G099186
GRMZM2G099317
GRMZM2G175419
GRMZM2G474658
LOC_Os03g17710
LOC_Os05g02880
LOC_Os05g07000
jgi|Sorbi1|4850994|e_gw1.9.1680.1
jgi|Sorbi1|4990776|fgenesh1_pg.C_chr_9000504
LjT38D03.80.nd
chr1.CM0033.10.nd
chr1.CM0033.20.nd
AT2G37340
AT3G53500
GSVIVP00023097001
GSVIVP00029498001
grail3.0013007302_653760
grail3.0004036801_667717
39
Glyma03g01920
Glyma10g38400
Glyma20g29460
jgi|Phypa1_1|167387|estExt_fgenesh1_pg.C_1440043
GRMZM2G121269
LOC_Os02g03040
jgi|Sorbi1|5054582|Sb04g001910
IMGA|AC202516_18.1
LjT39A22.50.nd
AT4G25500
AT5G52040
GSVIVP00026247001
gw1.XIV.1029.1_244286
gw1.XV.3134.1_253698
gw1.II.2943.1_411608
gw1.XII.1631.1_423171
77
Glyma02g38540
Glyma09g15820
Glyma14g36670
jgi|Phypa1_1|108464|estExt_fgenesh1_pm.C_2700006
jgi|Phypa1_1|141868|e_gw1.183.81.1
AC203812.3_FGP004
GRMZM2G060594
GRMZM2G426229
LOC_Os03g25770
LOC_Os07g43950
jgi|Sorbi1|4870650|estExt_Genewise1Plus.C_chr_18874
jgi|Sorbi1|5052097|Sb02g040350
IMGA|AC146760_9.2
LjSGA_024086.1
AT1G55310
AT3G13570
gw1.XVI.1974.1_256035
84
Glyma07g05900
Glyma16g02500
GRMZM2G021223
GRMZM2G064612
LOC_Os04g02870
jgi|Sorbi1|148965|estExt_fgenesh1_kg.C_chr_60010
jgi|Sorbi1|4776936|e_gw1.1.19228.1
AT2G46610
AT3G61860
GSVIVP00008658001
gw1.XIV.1813.1_245070
eugene3.00021623_552308
247
Glyma02g41510
Glyma14g07440
LOC_Os02g15310
LOC_Os12g38430
jgi|Sorbi1|4996029|fgenesh1_pg.C_scaffold_514000001
jgi|Sorbi1|5056881|Sb05g027700
IMGA|CR962128_15.2
chr2.CM0405.110.nd
AT3G55460
gw1.X.2172.1_227475
grail3.0049021701_656109
250
Glyma04g40740
Glyma06g14060
IMGA|CT868739_29.2
chr2.CM0249.1120.nc
AT3G49430
GSVIVP00037180001
gw1.XV.140.1_250704
333
Glyma07g38270
Glyma17g02470
LOC_Os03g24890
jgi|Sorbi1|5049384|Sb01g034590
chr4.LjT32J05.120.nc
AT5G18810
gw1.VIII.2127.1_420699
estExt_fgenesh4_kg.C_LG_X0007_814124
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