Help
Feedback
PlantGDB Site Search
Sequence ID
Sequence Keyword
at PlantGDB
Home
Sequence
-Overview -
Download
Search
-Overview-
Select Species...
Arabidopsis thaliana
Brassica napus
Brassica oleracea
Chlamydomonas reinhardtii
Cucumis sativus
Glycine max
Gossypium hirsutum
Hordeum vulgare
Medicago truncatula
Oryza sativa
Physcomitrella patens
Setaria italica
Sorghum bicolor
Triticum aestivum
Vitis vinifera
Zea mays
EST Assemb
-Overview -
Select Species...
Arabidopsis thaliana
Brassica napus
Brassica oleracea
Chlamydomonas reinhardtii
Cucumis sativus
Glycine max
Gossypium hirsutum
Hordeum vulgare
Medicago truncatula
Oryza sativa
Physcomitrella patens
Setaria italica
Sorghum bicolor
Triticum aestivum
Vitis vinifera
Zea mays
GSS Assemb
FTP Server
Genomes
-Overview-
Dicots
AtGDB
- Arabidopsis thaliana
BrGDB
- Brassica rapa
CpGDB
- Carica papaya
CsGDB
- Cucumis sativus
GhGDB
- Gossypium hirsutum
GmGDB
- Glycine max
LjGDB
- Lotus japonicus
MeGDB
- Manihot esculenta
MtGDB
- Medicago truncatula
MgGDB
- Mimulus guttatus
PeGDB
- Prunus persica
PtGDB
- Populus trichocarpa
RcGDB
- Ricinus communis
SlGDB
- Solanum lycopersicum
StGDB
- Solanum tuberosum
VvGDB
- Vitis vinifera
Monocots
BdGDB
- Brachypodium distachyon
HvGDB
- Hordeum vulgare
OsGDB
- Oryza sativa
SbGDB
- Sorghum bicolor
SiGDB
- Setaria italica
TaGDB
- Triticum aestivum
ZmGDB
- Zea mays
Other
CrGDB
- Chlamydomonas reinhardtii
PpGDB
- Physcomitrella patens
SmGDB
- Selaginella moellendorffii
VcGDB
- Volvox carteri
Tools
-Overview-
BioExtract
BLAST
DAS
GeneSeqer
GenomeThreader
MuSeqBox
PatternSearch
ProbeMatch
TE nest
yrGATE
Datasets
- Overview -
ASIP
PLEXdb
RescueMu
RFLP/FLIS
SRGD
UniformMu
Outreach
Plant Genome Outreach Portal (PGROP)
Outreach to Native Americans
Help
Help
Community Annotation
Genome Browsers
TableMaker
Tutorials
Annotation Tutorial
Annotation Lessons
GeneSeqer Tutorial
About Us
News
Tour
F.A.Q.
Site Map
Publications
Links
Acknowledgments
Overview
Data & Methods
BLAST
Old Version
Database
Overview
Human
Drosophila
Yeast
small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
2.1 Splice site selection
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
12
Glyma04g43500
Glyma06g48230
jgi|Phypa1_1|126178|e_gw1.58.41.1
jgi|Phypa1_1|130002|e_gw1.79.119.1
jgi|Phypa1_1|196615|estExt_gwp_gw1.C_2700027
jgi|Phypa1_1|30913|gw1.88.127.1
GRMZM2G022763
GRMZM2G057450
GRMZM2G093256
LOC_Os11g41820
LOC_Os11g45590
jgi|Sorbi1|4824369|e_gw1.5.16491.1
jgi|Sorbi1|4982776|fgenesh1_pg.C_chr_5002136
IMGA|AC124956_60.2
IMGA|AC161788_24.2
IMGA|CT010464_26.2
IMGA|CU234149_15.1
chr3.CM0129.150.nc
AT1G60900
AT4G36690
GSVIVP00024970001
gw1.57.228.1_424261
estExt_Genewise1_v1.C_LG_VII3407_719459
16
Glyma07g20090
Glyma12g30590
Glyma20g00950
jgi|Phypa1_1|194373|estExt_gwp_gw1.C_2150084
jgi|Phypa1_1|25638|gw1.15.161.1
GRMZM2G020928
GRMZM2G025014
GRMZM2G031827
LOC_Os05g48960
jgi|Sorbi1|5002328|estExt_fgenesh1_pg.C_chr_32463
jgi|Sorbi1|5010133|estExt_fgenesh1_pg.C_chr_92263
IMGA|AC140774_4.2
IMGA|AC202461_20.1
LjB15A13.120.nd
chr3.CM0396.90.nc
AT1G27650
AT5G42820
GSVIVP00002951001
GSVIVP00021681001
eugene3.00051631_560016
grail3.0003001802_642753
grail3.0028027401_676151
estExt_Genewise1_v1.C_660125_741667
23
Glyma04g41660
Glyma06g13130
Glyma09g37080
Glyma13g08170
Glyma14g30490
Glyma18g49580
jgi|Phypa1_1|130366|e_gw1.81.40.1
jgi|Phypa1_1|2556|gw1.326.8.1
GRMZM2G058039
GRMZM2G178169
LOC_Os01g43170
LOC_Os08g33830
jgi|Sorbi1|4764206|estExt_Genewise1.C_chr_76386
jgi|Sorbi1|5053352|Sb03g028150
IMGA|AC122724_35.2
IMGA|AC140025_37.2
IMGA|AC148485_50.2
IMGA|CT963079_1.2
chr1.CM0141.270.nc
AT3G01150
AT5G53180
GSVIVP00006509001
gw1.IV.78.1_194989
gw1.XV.556.1_251120
gw1.XVII.1172.1_259181
55
Glyma02g08870
Glyma10g36770
Glyma16g27970
Glyma20g30820
jgi|Phypa1_1|124217|e_gw1.48.34.1
jgi|Phypa1_1|206932|estExt_Genewise1.C_360029
GRMZM2G052926
GRMZM2G070113
LOC_Os01g64770
LOC_Os05g36120
jgi|Sorbi1|4894939|estExt_Genewise1Plus.C_chr_96295
IMGA|AC150978_38.2
chr5.CM0052.230.nd
AT1G43190
GSVIVP00019344001
GSVIVP00031740001
gw1.II.1931.1_410596
estExt_Genewise1_v1.C_LG_V0370_714769
137
Glyma09g36510
Glyma12g00850
jgi|Phypa1_1|185832|estExt_gwp_gw1.C_870043
jgi|Phypa1_1|189930|estExt_gwp_gw1.C_1380136
GRMZM2G000980
GRMZM2G034313
LOC_Os04g31620
jgi|Sorbi1|4761947|estExt_Genewise1.C_chr_67041
jgi|Sorbi1|4775334|e_gw1.1.16918.1
LjSGA_048053.1
AT5G51300
GSVIVP00027806001
gw1.III.1359.1_414256
gw1.29.285.1_423773
211
Glyma16g05410
Glyma19g27450
jgi|Phypa1_1|104757|estExt_fgenesh1_pm.C_140014
jgi|Phypa1_1|207675|estExt_Genewise1.C_410020
AC199922.3_FGP003
GRMZM2G083689
LOC_Os03g22570
jgi|Sorbi1|4744252|estExt_Genewise1.C_chr_19199
IMGA|AC149131_44.2
chr1.CM1880.30.nc
AT2G13540
GSVIVP00022233001
estExt_Genewise1_v1.C_LG_IX3662_722993
216
Glyma12g33400
Glyma13g37030
GRMZM2G034804
LOC_Os02g39890
jgi|Sorbi1|148671|estExt_fgenesh1_kg.C_chr_40228
chr3.CM0160.780.nd
AT5G44200
GSVIVP00018636001
estExt_Genewise1_v1.C_LG_VII0586_718232
estExt_fgenesh4_pm.C_640064_836651
235
Glyma08g17310
Glyma15g39220
jgi|Phypa1_1|151209|e_gw1.333.45.1
GRMZM2G047528
LOC_Os02g35150
jgi|Sorbi1|5038438|Sb04g022810
jgi|Sorbi1|5038439|Sb04g022813
IMGA|AC140549_72.2
IMGA|AC140549_84.2
AT1G10320
GSVIVP00035343001
eugene3.00860069_596778
grail3.0086005901_681070
Loading Help Page...Thanks for your patience!
Loading Video...Thanks for your patience!
Loading Image...Thanks for your patience!