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Arabidopsis thaliana
Brassica napus
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Human
Drosophila
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
1.7 18s U11/U2 snRNP specfic proteins
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
128
Glyma11g10920
Glyma11g10970
Glyma12g03170
jgi|Phypa1_1|112152|e_gw1.3.614.1
jgi|Phypa1_1|148484|e_gw1.278.27.1
jgi|Phypa1_1|215001|estExt_Genewise1.C_1090004
GRMZM2G047321
LOC_Os04g56770
jgi|Sorbi1|4985659|fgenesh1_pg.C_chr_6002546
IMGA|AC122726_14.2
IMGA|AC125476_1.2
IMGA|AC146776_33.2
AT3G07860
GSVIVP00015525001
fgenesh4_pm.C_LG_II000072_798383
151
Glyma16g04710
Glyma19g28530
jgi|Phypa1_1|135013|e_gw1.116.32.1
GRMZM2G042615
LOC_Os03g21020
jgi|Sorbi1|5049506|Sb01g036600
IMGA|AC145753_35.2
chr1.CM0104.290.nd
AT1G09230
GSVIVP00001950001
GSVIVP00038819001
GSVIVP00038820001
eugene3.00190362_573888
estExt_Genewise1_v1.C_LG_XIII1925_729948
339
Glyma08g48140
Glyma18g53350
jgi|Phypa1_1|78228|fgenesh1_pg.scaffold_70000045
GRMZM2G301536
LOC_Os09g33870
jgi|Sorbi1|5051456|Sb02g029740
AT2G43370
GSVIVP00001916001
fgenesh4_pg.C_scaffold_64000067_782205
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