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Brassica napus
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Human
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
1.4 U5 snRNP specific proteins
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
13
Glyma08g18110
Glyma15g40840
Glyma15g40850
Glyma15g40860
jgi|Phypa1_1|109208|estExt_fgenesh1_pm.C_4310002
jgi|Phypa1_1|189887|estExt_gwp_gw1.C_1380085
jgi|Phypa1_1|217194|estExt_Genewise1.C_1380094
jgi|Phypa1_1|217197|estExt_Genewise1.C_1380097
jgi|Phypa1_1|227610|estExt_Genewise1.C_4310001
jgi|Phypa1_1|228450|estExt_Genewise1.C_34950001
AC203173.3_FGP004
GRMZM2G040369
GRMZM2G095851
GRMZM2G113250
LOC_Os01g52470
LOC_Os01g53900
LOC_Os02g32030
LOC_Os04g02820
jgi|Sorbi1|4753157|estExt_Genewise1.C_chr_38606
jgi|Sorbi1|4780116|e_gw1.1.187.1
jgi|Sorbi1|5011668|estExt_fgenesh1_pg.C_5250001
jgi|Sorbi1|5053684|Sb03g034200
IMGA|AC146817_13.2
IMGA|AC146817_14.2
IMGA|AC169513_1.2
LjSGA_018952.1
LjSGA_074884.1
LjSGA_091217.1
LjSGA_119931.1
AT1G56070
AT3G12915
GSVIVP00025738001
GSVIVP00025739001
eugene3.00050364_558749
eugene3.00070821_562883
eugene3.00070822_562884
31
Glyma06g21970
Glyma08g18490
Glyma15g40460
jgi|Phypa1_1|130836|e_gw1.84.11.1
jgi|Phypa1_1|205535|estExt_Genewise1.C_280123
GRMZM2G026991
LOC_Os02g01740
LOC_Os03g11470
LOC_Os03g53220
jgi|Sorbi1|4782401|e_gw1.1.6.1
jgi|Sorbi1|4871897|estExt_Genewise1Plus.C_chr_110781
jgi|Sorbi1|4881694|estExt_Genewise1Plus.C_chr_40090
jgi|Sorbi1|5052122|Sb02g040700
IMGA|AC174366_25.2
IMGA|AC202497_1.1
IMGA|AC202497_18.1
IMGA|AC202497_4.1
IMGA|AC202497_9.1
IMGA|CU182773_13.1
IMGA|CU182773_14.1
chr3.CM0279.370.nc
chr5.LjT14K23.20.nc
AT1G20960
AT2G42270
AT5G61140
GSVIVP00001949001
GSVIVP00016213001
gw1.82.68.1_296528
fgenesh4_pg.C_LG_XII000954_773179
fgenesh4_pg.C_LG_XV000704_776276
73
Glyma13g44290
Glyma15g00980
jgi|Phypa1_1|200564|estExt_gwp_gw1.C_4380024
jgi|Phypa1_1|214404|estExt_Genewise1.C_1010009
GRMZM2G099355
GRMZM2G433801
LOC_Os05g07050
LOC_Os06g07080
jgi|Sorbi1|5010538|estExt_fgenesh1_pg.C_chr_100493
IMGA|AC153129_17.2
IMGA|AC159141_26.2
IMGA|AC172743_18.2
IMGA|AC174466_42.2
IMGA|AC202568_1.1
chr3.LjT23O13.150.nd
chr3.LjT23O13.30.nd
AT1G80070
AT4G38780
GSVIVP00000309001
GSVIVP00000310001
eugene3.00440042_592707
98
Glyma07g39910
Glyma17g00860
jgi|Phypa1_1|114798|e_gw1.11.51.1
jgi|Phypa1_1|212087|estExt_Genewise1.C_760056
GRMZM2G057394
GRMZM2G123459
LOC_Os03g50090
jgi|Sorbi1|4818490|e_gw1.5.16257.1
jgi|Sorbi1|4868244|estExt_Genewise1Plus.C_chr_12135
IMGA|AC146560_18.2
AT1G28180
AT2G33730
GSVIVP00029727001
GSVIVP00035915001
fgenesh4_pg.C_LG_XV000380_775952
153
Glyma13g23420
Glyma17g11410
jgi|Phypa1_1|106976|estExt_fgenesh1_pm.C_1170010
jgi|Phypa1_1|107993|estExt_fgenesh1_pm.C_2140004
GRMZM2G316232
LOC_Os06g40600
jgi|Sorbi1|5061910|Sb10g023820
IMGA|AC138131_47.2
LjT06I13.90.nc
AT1G06220
AT5G25230
GSVIVP00005644001
grail3.0020036201_669672
estExt_fgenesh4_pm.C_LG_VI0503_832004
162
Glyma12g33050
Glyma13g37420
jgi|Phypa1_1|203777|estExt_Genewise1.C_160130
jgi|Phypa1_1|221366|estExt_Genewise1.C_2120013
GRMZM2G049902
GRMZM2G401561
LOC_Os01g15860
LOC_Os10g35550
jgi|Sorbi1|4892795|estExt_Genewise1Plus.C_chr_85308
jgi|Sorbi1|5047088|Sb09g029840
IMGA|AC144617_5.2
chr3.CM0160.70.nc
AT4G03430
GSVIVP00025837001
estExt_Genewise1_v1.C_LG_XIII3357_730490
165
Glyma09g42050
Glyma19g28830
jgi|Phypa1_1|183758|estExt_gwp_gw1.C_680076
GRMZM2G134982
LOC_Os02g33850
LOC_Os03g44780
jgi|Sorbi1|4742012|estExt_Genewise1.C_chr_12654
jgi|Sorbi1|4883218|estExt_Genewise1Plus.C_chr_46163
IMGA|AC146552_4.2
LjT41N19.140.nd
AT3G22980
GSVIVP00005997001
gw1.IX.593.1_200128
gw1.IX.605.1_200140
eugene3.129250001_581305
188
Glyma09g42010
Glyma19g28850
jgi|Phypa1_1|217419|estExt_Genewise1.C_1410065
GRMZM2G108277
LOC_Os07g10256
LOC_Os10g34520
jgi|Sorbi1|4890904|estExt_Genewise1Plus.C_chr_76089
jgi|Sorbi1|4897019|estExt_Genewise1Plus.C_chr_101590
IMGA|AC140026_26.2
IMGA|AC163324_58.2
chr6.LjT06I08.50.nc
AT5G08290
GSVIVP00020074001
estExt_fgenesh4_kg.C_LG_VII0024_813981
291
Glyma16g04160
Glyma19g29230
jgi|Phypa1_1|128744|e_gw1.72.72.1
jgi|Phypa1_1|188278|estExt_gwp_gw1.C_1170033
GRMZM2G089857
LOC_Os06g44370
jgi|Sorbi1|4771268|estExt_Genewise1.C_chr_107259
IMGA|AC126009_25.2
AT2G43770
GSVIVP00034694001
eugene3.00190894_574420
354
Glyma16g07850
jgi|Phypa1_1|122688|e_gw1.41.16.1
GRMZM2G346278
LOC_Os02g40450
jgi|Sorbi1|4812687|e_gw1.4.14527.1
AT3G27730
GSVIVP00020695001
gw1.I.2464.1_173864
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