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Human
Drosophila
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small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
1.3 17S U2 snRNP specific proteins
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
60
Glyma09g01020
Glyma10g41070
Glyma15g18950
Glyma20g26200
jgi|Phypa1_1|139325|e_gw1.156.105.1
jgi|Phypa1_1|174116|estExt_gwp_gw1.C_30503
GRMZM2G028156
GRMZM2G431306
LOC_Os02g14780
jgi|Sorbi1|4878276|estExt_Genewise1Plus.C_chr_32172
IMGA|AC141922_25.2
LjT29P04.220.nd
LjT29P04.270.nd
AT1G14640
AT1G14650
GSVIVP00030195001
eugene3.00070768_562830
fgenesh4_pm.C_LG_V000144_801052
62
Glyma13g30200
jgi|Phypa1_1|175218|estExt_gwp_gw1.C_110154
GRMZM2G117346
GRMZM2G410393
LOC_Os02g04950
LOC_Os02g05310
LOC_Os02g05410
LOC_Os02g27790
jgi|Sorbi1|4882014|estExt_Genewise1Plus.C_chr_40699
jgi|Sorbi1|4973049|fgenesh1_pg.C_chr_3000164
IMGA|AC169124_23.2
chr6.CM0055.610.nd
AT5G64270
GSVIVP00023361001
eugene3.00170116_577374
86
Glyma18g06890
jgi|Phypa1_1|214625|estExt_Genewise1.C_1030037
GRMZM2G047018
GRMZM2G456086
LOC_Os04g56760
LOC_Os05g30410
jgi|Sorbi1|142322|estExt_fgenesh1_pm.C_chr_20085
jgi|Sorbi1|4762689|estExt_Genewise1.C_chr_68334
LjSGA_052672.1
AT1G07170
AT2G30000
GSVIVP00038875001
grail3.0053016901_641471
grail3.0001081901_649849
estExt_Genewise1_v1.C_LG_I2118_706561
estExt_fgenesh4_pm.C_LG_IX0434_833165
91
Glyma13g25110
Glyma13g31550
Glyma15g07760
jgi|Phypa1_1|132792|e_gw1.98.18.1
jgi|Phypa1_1|201031|estExt_gwp_gw1.C_5050010
GRMZM2G132060
LOC_Os02g58090
jgi|Sorbi1|5062348|Sb10g031230
IMGA|AC149135_53.2
LjSGA_054238.1
LjSGA_088573.1
AT4G21660
GSVIVP00010279001
fgenesh4_pg.C_LG_XI000282_771129
estExt_fgenesh4_pg.C_LG_IV0271_817772
105
Glyma10g43750
Glyma20g38460
jgi|Phypa1_1|168774|estExt_fgenesh1_pg.C_1880047
jgi|Phypa1_1|227044|estExt_Genewise1.C_3910042
jgi|Phypa1_1|90420|fgenesh1_pg.scaffold_197000028
GRMZM2G078592
GRMZM2G096972
LOC_Os02g04480
jgi|Sorbi1|5054645|Sb04g003000
IMGA|AC147482_63.2
IMGA|AC157349_15.2
IMGA|AC182813_38.2
chr5.CM0260.180.nc
AT3G55200
AT3G55220
GSVIVP00029524001
fgenesh4_pm.C_LG_VIII000172_803217
fgenesh4_pm.C_LG_X000853_805547
108
Glyma08g40200
Glyma18g17590
jgi|Phypa1_1|194407|estExt_gwp_gw1.C_2150124
GRMZM2G121942
LOC_Os08g34480
jgi|Sorbi1|148560|estExt_fgenesh1_kg.C_chr_40113
IMGA|AC146588_21.2
IMGA|AC174365_16.2
IMGA|CT963073_1.2
IMGA|CT963073_20.2
LjSGA_035312.0.1
AT3G23325
AT4G14342
GSVIVP00020286001
eugene3.00100333_565775
estExt_fgenesh4_pm.C_LG_VIII0705_832840
118
Glyma02g39890
Glyma14g38030
jgi|Phypa1_1|131194|e_gw1.87.54.1
GRMZM2G007590
GRMZM2G153450
LOC_Os03g18720
jgi|Sorbi1|4871198|estExt_Genewise1Plus.C_chr_19737
IMGA|AC140068_40.2
IMGA|CR932960_70.2
chr2.CM0058.100.nc
AT1G06960
AT2G30260
GSVIVP00023992001
gw1.XIII.155.1_239906
estExt_fgenesh4_pm.C_LG_XIX0309_836161
160
Glyma04g41530
Glyma06g13290
jgi|Phypa1_1|194502|estExt_gwp_gw1.C_2180031
GRMZM2G178227
LOC_Os03g50850
jgi|Sorbi1|149038|estExt_fgenesh1_kg.C_chr_60089
jgi|Sorbi1|4805380|e_gw1.3.16870.1
IMGA|CR974443_9.2
chr1.CM0496.90.nd
AT5G06160
GSVIVP00037110001
gw1.XV.452.1_251016
eugene3.00120183_569530
175
Glyma10g24350
Glyma20g18440
jgi|Phypa1_1|167591|estExt_fgenesh1_pg.C_1520025
jgi|Phypa1_1|17093|gw1.134.46.1
jgi|Phypa1_1|208831|estExt_Genewise1.C_490074
GRMZM2G021742
LOC_Os02g13990
jgi|Sorbi1|147037|estExt_fgenesh1_kg.C_chr_10010
LjSGA_002348.1
AT1G09760
GSVIVP00006250001
eugene3.00010586_548145
estExt_fgenesh4_pm.C_LG_III0531_830906
186
Glyma02g44710
Glyma14g04020
jgi|Phypa1_1|210582|estExt_Genewise1.C_630098
GRMZM2G107745
GRMZM2G358416
LOC_Os03g59710
jgi|Sorbi1|5047868|Sb01g003790
IMGA|AC136507_44.2
IMGA|AC146941_26.2
chr2.CM0308.280.nc
AT5G12190
GSVIVP00017245001
grail3.0001086301_649901
estExt_Genewise1_v1.C_LG_I1980_706505
202
Glyma09g00310
Glyma12g36950
jgi|Phypa1_1|184121|estExt_gwp_gw1.C_700168
GRMZM2G102639
GRMZM2G170699
LOC_Os10g31900
jgi|Sorbi1|4997398|estExt_fgenesh1_pg.C_chr_12143
IMGA|AC139882_12.2
IMGA|AC148818_28.2
IMGA|CT009535_3.2
LjSGA_046448.1
AT2G18510
GSVIVP00024968001
gw1.57.217.1_424250
295
Glyma13g44430
Glyma15g00840
jgi|Phypa1_1|25563|gw1.29.96.1
jgi|Phypa1_1|97102|fgenesh1_pg.scaffold_318000042
GRMZM2G307906
LOC_Os03g15700
jgi|Sorbi1|4998427|estExt_fgenesh1_pg.C_chr_14131
chr3.CM0590.350.nc
AT2G32600
GSVIVP00000599001
grail3.0025001901_667866
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