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Human
Drosophila
Yeast
small nuclear RNA
395 Splicing Related Genes
10 Plant Species
Arabidopsis
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Species Comparisons
Overview
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Gene Groups
Overview
1. Small nuclear Ribonucleoprotein
1.1 Sm core proteins
1.2 U1 snRNP specific proteins
1.3 17S U2 snRNP specific proteins
1.4 U5 snRNP specific proteins
1.5 U4/U6 snRNP specific proteins
1.6 Tri-snRNP specific proteins (U4/U6.U5)
1.7 18s U11/U2 snRNP specfic proteins
2. Splicing factors
2.1 Splice site selection
2.2 SR protein
2.3 17S U2 associated proteins
2.4 35S U5 associated proteins
2.5 Proteins specific for BDU1 complex
2.6 Exon junction complex (EJC) proteins
2.7 Second step splicing factors
2.8 Other known splicing factors
3. Splicing regulation
3.1 SR protein Kinase
3.2 Glycine-Rich RNA binding protein
3.3 hnRNP A/B family
3.4 Other hnRNP proteins (with animal homologs)
3.5 Other plant hnRNPs
4. Novel spliceosome proteins
4.1 Proteins involved in other processes
4.2 Poly A binding protein
4.3 DEAD/H box helicase
4.4 cis-trans prolyl isomerases
4.5 Related to spliceosome
5. Possible splicing related proteins
5.1 Splice factor like
5.2 Nucleotide Binding proteins
5.3 Possible multiple function proteins
5.4 Glycine Rich protein
Novel Splicing-related Proteins
Overview
Novel Splicing-related Proteins
Specific Proteins
Overview
Arabidopsis Specific Proteins
Dicots Specific Proteins
Missing Proteins in Pp
Search
Group
CIWOG
Gene
hHomologs
SeHomologs
Gene Name
Chr
Domains
Group Name
HID
GB Accession
in
Any species
Arabidopsis thaliana
Glycine max
Lotus japonicus
Medicago truncatula
Oryza sativa
Physcomitrella patens
Populus trichocarpa
Sorghum bicolor
Vitis vinifera
Zea mays
Human
Drosophila
Yeast
Glycine max (Gm)
1.1 Sm core proteins
CIWOG
Gm
Pp
Zm
Os
Sb
Mt
Lj
At
Vv
Pt
40
Glyma20g34630
jgi|Phypa1_1|123802|e_gw1.46.90.1
jgi|Phypa1_1|149032|e_gw1.288.28.1
jgi|Phypa1_1|89290|fgenesh1_pg.scaffold_181000018
GRMZM2G076399
GRMZM2G166985
GRMZM2G171372
LOC_Os05g24970
jgi|Sorbi1|149087|estExt_fgenesh1_kg.C_chr_60138
IMGA|AC153350_26.2
chr4.CM0042.1540.nc
AT2G47640
AT3G62840
GSVIVP00028009001
estExt_Genewise1_v1.C_LG_II0233_709823
estExt_fgenesh4_kg.C_LG_XIV0024_814376
81
Glyma02g45830
Glyma14g02940
jgi|Phypa1_1|161391|estExt_fgenesh1_pg.C_320105
jgi|Phypa1_1|225790|estExt_Genewise1.C_3330059
jgi|Phypa1_1|53669|gw1.333.63.1
jgi|Phypa1_1|53670|gw1.446.24.1
GRMZM2G021149
GRMZM2G022041
LOC_Os07g07220
jgi|Sorbi1|5050600|Sb02g003850
chr2.LjT02E02.160.nd
AT4G20440
AT5G44500
GSVIVP00002642001
gw1.XI.1022.1_233042
83
Glyma02g10640
Glyma03g30880
Glyma18g52210
Glyma19g33700
jgi|Phypa1_1|157208|e_gw1.726.1.1
jgi|Phypa1_1|179711|estExt_gwp_gw1.C_370112
jgi|Phypa1_1|188201|estExt_gwp_gw1.C_1160015
GRMZM2G027571
GRMZM2G416061
LOC_Os02g37430
LOC_Os04g39444
jgi|Sorbi1|4761158|estExt_Genewise1.C_chr_65695
jgi|Sorbi1|4883443|estExt_Genewise1Plus.C_chr_46620
IMGA|AC146865_2.2
AT3G07590
AT4G02840
GSVIVP00033465001
estExt_Genewise1_v1.C_LG_V0812_714948
estExt_fgenesh4_pm.C_LG_II0256_830114
90
Glyma02g17430
Glyma03g37170
Glyma10g02380
Glyma19g39780
jgi|Phypa1_1|121610|e_gw1.36.199.1
GRMZM2G038606
GRMZM2G095114
LOC_Os01g15310
jgi|Sorbi1|4751585|estExt_Genewise1.C_chr_32091
IMGA|AC141115_6.2
IMGA|AC202494_26.1
LjSGA_020126.1
AT5G27720
GSVIVP00022717001
eugene3.00021743_552428
96
Glyma04g38600
Glyma06g16410
Glyma13g01320
Glyma17g07460
jgi|Phypa1_1|106560|estExt_fgenesh1_pm.C_840022
jgi|Phypa1_1|110323|estExt_fgenesh1_kg.C_2090005
jgi|Phypa1_1|118904|e_gw1.26.139.1
GRMZM2G014091
GRMZM2G386608
LOC_Os02g03440
jgi|Sorbi1|142872|estExt_fgenesh1_pm.C_chr_30075
IMGA|AC196855_4.1
IMGA|CU179877_9.1
AT2G18740
AT4G30330
GSVIVP00017697001
estExt_Genewise1_v1.C_LG_XVIII2933_737849
estExt_Genewise1_v1.C_1710010_746341
150
Glyma05g31950
Glyma08g15260
jgi|Phypa1_1|161443|estExt_fgenesh1_pg.C_330029
jgi|Phypa1_1|56303|fgenesh1_pm.scaffold_33000008
GRMZM2G115176
GRMZM2G115925
LOC_Os02g01250
LOC_Os03g13760
jgi|Sorbi1|5049835|Sb01g041430
IMGA|AC141113_9.2
chr3.CM0164.220.nd
AT1G20580
GSVIVP00002878001
eugene3.00020086_550771
estExt_Genewise1_v1.C_LG_V2071_715635
171
Glyma05g28190
Glyma08g11160
jgi|Phypa1_1|192923|estExt_gwp_gw1.C_1900008
jgi|Phypa1_1|206902|estExt_Genewise1.C_350284
GRMZM2G016097
GRMZM2G106105
LOC_Os08g08040
jgi|Sorbi1|4762473|estExt_Genewise1.C_chr_67944
IMGA|AC142224_16.2
chr3.LjT46L11.10.nc
AT2G03870
GSVIVP00008837001
estExt_Genewise1_v1.C_LG_I1870_706444
estExt_Genewise1_v1.C_LG_IX3230_722752
190
Glyma17g07060
Glyma20g21250
jgi|Phypa1_1|144795|e_gw1.219.49.1
jgi|Phypa1_1|208472|estExt_Genewise1.C_460191
GRMZM2G058252
GRMZM2G168252
LOC_Os11g43620
jgi|Sorbi1|4798049|e_gw1.3.1801.1
jgi|Sorbi1|4882292|estExt_Genewise1Plus.C_chr_41141
IMGA|AC135801_11.2
chr5.CM0852.120.nd
AT4G30220
eugene3.00180816_578592
198
Glyma07g04580
jgi|Phypa1_1|137954|e_gw1.142.63.1
jgi|Phypa1_1|162711|estExt_fgenesh1_pg.C_460132
GRMZM2G092429
LOC_Os04g36810
jgi|Sorbi1|4760968|estExt_Genewise1.C_chr_65346
IMGA|AC156828_37.2
IMGA|AC174289_29.2
chr6.CM0420.220.nd
AT3G14080
GSVIVP00034053001
estExt_Genewise1_v1.C_1580060_745826
estExt_fgenesh4_pm.C_LG_III0051_830650
199
Glyma09g39830
Glyma18g46370
jgi|Phypa1_1|160036|estExt_fgenesh1_pg.C_170228
jgi|Phypa1_1|218770|estExt_Genewise1.C_1620125
GRMZM2G159675
LOC_Os02g30624
LOC_Os04g31950
jgi|Sorbi1|4809779|e_gw1.4.13539.1
IMGA|AC137667_47.2
AT2G43810
AT3G59810
estExt_fgenesh4_pm.C_LG_VIII0306_832613
201
Glyma03g35490
Glyma19g38130
jgi|Phypa1_1|194529|estExt_gwp_gw1.C_2180063
jgi|Phypa1_1|228019|estExt_Genewise1.C_4750009
GRMZM2G057865
LOC_Os03g29740
jgi|Sorbi1|147386|estExt_fgenesh1_kg.C_chr_10370
jgi|Sorbi1|4876387|estExt_Genewise1Plus.C_chr_210320
IMGA|AC150442_9.2
AT2G23930
AT3G11500
GSVIVP00021594001
estExt_Genewise1_v1.C_LG_VI0793_717040
estExt_Genewise1_v1.C_LG_XVI2449_735363
236
Glyma03g30750
Glyma19g33600
jgi|Phypa1_1|198696|estExt_gwp_gw1.C_3360028
GRMZM2G063322
GRMZM2G092535
LOC_Os08g05850
jgi|Sorbi1|4756401|estExt_Genewise1.C_chr_45872
jgi|Sorbi1|5058410|Sb07g003620
IMGA|AC139854_38.2
AT1G03330
GSVIVP00023663001
estExt_fgenesh4_kg.C_LG_III0001_813708
estExt_fgenesh4_kg.C_1630004_814695
298
Glyma08g18410
Glyma15g40590
jgi|Phypa1_1|167674|estExt_fgenesh1_pg.C_1540070
GRMZM2G320379
jgi|Sorbi1|149845|estExt_fgenesh1_kg.C_chr_90290
LjT03D12.50.nd
AT1G65700
GSVIVP00013856001
grail3.0053017202_641478
303
Glyma02g09090
Glyma16g28300
jgi|Phypa1_1|176333|estExt_gwp_gw1.C_160192
LOC_Os01g64690
IMGA|AC146567_7.2
chr1.CM0316.100.nd
AT1G21190
AT1G76860
GSVIVP00031776001
grail3.0003059101_643482
estExt_fgenesh4_pm.C_LG_V0415_831544
307
Glyma05g25800
jgi|Phypa1_1|205524|estExt_Genewise1.C_280109
GRMZM2G049013
LOC_Os05g32310
jgi|Sorbi1|4767833|estExt_Genewise1.C_chr_95696
AT5G48870
GSVIVP00020489001
eugene3.00090932_557672
grail3.0053017102_641475
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