Database

Species Comparisons

Gene Groups

Novel Splicing-related Proteins

Specific Proteins

Sorghum bicolor (Sb)

1. Small nuclear Ribonucleoprotein (snRNP)

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
1.1	108	Sb06g022770.1	SmD2		sbSmD2	6	r	51992700	51994819		Sm 1
1.1	147	Sb06g019630.1	SmD1	SmD1	sbSmD1-a1	6	r	49202885	49205751		Sm 1
1.1	147	Sb04g024330.1	SmD1	SmD1	sbSmD1-a2	4	r	54068261	54071455		Sm 1
1.1	181	Sb03g001950.1	SmE	SmE	sbSmE-a	3	f	1807604	1810668		Sm 1
1.1	221	Sb03g009890.1	LSM4	LSm4	sbLSM4	3	r	10646725	10650982		Sm 1
1.1	336	Sb02g003850.1	SmB	SmB1	sbSmB-a	2	f	4269633	4273497		Sm 1
1.1	344	Sb01g041430.1	SmD3	SmD3	sbSmD3-b	1	r	64758636	64762561		Sm 1
1.1	469	Sb01g032730.1	SmG	SmG	sbSmG-a1	1	r	55663536	55665957		Sm 1
1.1	469	Sb02g039000.1	SmG	SmG	sbSmG-a2	2	r	73132669	73134954		Sm 1
1.1	472	Sb06g029950.1	LSM7	LSm7	sbLSM7	6	r	58426145	58428169		Sm 1
1.1	479	Sb04g020750.2	LSM2	LSm2	sbLSM2-1	4	f	48826550	48831630		Sm 1
1.1	479	Sb07g003620.1	LSM2	LSm2	sbLSM2-2	7	f	4397603	4403192		Sm 1
1.1	539	Sb09g019200.1	LSM5	LSm5	sbLSM5/SAD1	9	r	47919642	47921334		Sm 1
1.1	540	Sb03g003900.1	SmF	SmF	sbSmF-1	3	r	4138338	4140913		Sm 1
1.1	540	Sb04g005200.1	SmF	SmF	sbSmF-2	4	r	5055899	5058423		Sm 1
1.1	545	Sb06g017930.1	LSM1	LSm1	sbLSM1b	6	f	47406168	47411280		Sm 1
1.1	548	Sb06g013920.1	LSM6	LSm6	sbLSM6a	6	r	38386045	38395366		Sm 1
1.1	550	Sb09g030810.1	LSM8	LSm8	sbLSM8	9	f	59431871	59434202		Sm 1
1.1	561	Sb03g040920.1	LSM3	LSm3	sbLSM3a	3	r	68421509	68422312		Sm 1
1.2	92	Sb01g001640.1	Luc7		sbc7a	1	f	1475109	1480625		DUF259 1
1.2	92	Sb04g025450.1	Luc7		sbc7b	4	r	55185906	55190950		DUF259 1
1.2	208	Sb01g043300.1	Prp39		sbPrp39a	1	f	66519441	66527462		HAT 7; TPR-like 1
1.2	403	Sb01g039540.1	U1-70K	Snp1	sbU1-70K	1	r	62939704	62944925		RRM 1
1.2	463	Sb04g009880.1	U1C_Subunit	Yhc1	sbU1C-1	4	r	12581088	12584390		C2H2 1; mrCtermi 3
1.2	463	Sb04g028260.1	U1C_Subunit	Yhc1	sbU1C-2	4	f	58344204	58347428		C2H2 1; mrCtermi 3
1.2	475	Sb03g023440.2	FBP11	Prp40	sbPrp40a	3	r	46624051	46646447		WW 2; FF 5
1.2	538	Sb02g010960.1	Related_to_Luc7-like	Luc7	sbLuc7-rl	2	r	17544103	17547377		DUF259 1
1.2	981	Sb09g004270.1	U1A_Subunit	Mud1	sbU1A	9	f	5060151	5063515		RRM 2
1.2	1097	Sb07g019230.1	Prp39		sbPrp39b	7	r	49150386	49160602		HAT 4
1.3	170	Sb03g010420.1	SF3a120/SAP114_Subun	Prp21p	sbSAP114-1a	3	f	11251915	11255080		SWAP/Surp 2
1.3	203	Sb04g003370.1	SF3b160/SAP155_Subun	Hsh155	sbSAP155-1	4	f	3244729	3250597		HEAT 1; ARM 2; SAP
1.3	203	Sb03g001680.1	SF3b160/SAP155_Subun	Hsh155	sbSAP155-2	3	r	1493643	1497506		HEAT 1; ARM 2; SAP
1.3	222	Sb10g031230.1	SF3b150/SAP145_Subun	Cus1p	sbSF3b150	10	r	60857887	60862167		PSP 1; DUF382 1
1.3	228	Sb06g031860.1	SF3b_14b/PHP5A	Rds3p	sbSF3b_14b/PHP5A-a-1	6	r	60171333	60172881		UPF0123 1
1.3	228	Sb02g004290.1	SF3b_14b/PHP5A	Rds3p	sbSF3b_14b/PHP5A-a-2	2	r	4861139	4863615		UPF0123 1
1.3	256	Sb04g003000.1	SF3b120/SAP130_Subun	Rse1p	sbSAP130a	4	f	2807129	2812400		CPSF_A 1; WD40-like
1.3	347	Sb01g038060.1	U2B''_Subunit	Msl1p	sbU2B''	1	f	61660544	61665538		RRM 2
1.3	412	Sb01g001040.1	U2A'_Subunit	Lea1p	sbU2A	1	r	945221	949039		LRR 4
1.3	460	Sb01g003790.1	p14	Snu17p	sbP14-1	1	r	3050119	3051515		RRM 1
1.3	461	Sb06g018560.1	p14	Snu17p	sbSAP61-1	6	f	48159614	48169206		C2H2 1
1.3	461	Sb03g031320.1	p14	Snu17p	sbSAP61-2	3	f	59698747	59707112		C2H2 1
1.3	466	Sb07g021880.1	SF3b_10		sbSF3b10a	7	r	56094212	56101871		SF3b10 1
1.3	470	Sb01g020190.1	SF3b53/SAP49_Subunit	Hsh49p	sbSAP49a	1	r	22323952	22327402		RRM 2
1.3	758	Sb01g040250.1	SF3a66/SAP62_Subunit	Prp11p	sbSAP62	1	f	63619146	63622289		C2H2 1
1.4	44	Sb03g033210.1	116kD_Subunit/elonga	Snu114p	sbU5-116-2a	1	r	1752114	1756675		EFG_C 1; GTP_EFTU
1.4	44	Sb01g002040.2	116kD_Subunit/elonga	Snu114p	sbU5-116-2a	1	r	1752114	1756675		EFG_C 1; GTP_EFTU
1.4	44	Sb01g002040.1	116kD_Subunit/elonga	Snu114p	sbU5-116-2b	3	r	61571621	61574959		EFG_C 1; GTP_EFTU
1.4	44	Sb03g034200.1	116kD_Subunit/elonga	Snu114p	sbU5-116-2c	3	f	62412792	62417452		EFG_C 1; GTP_EFTU
1.4	75	Sb02g040700.1	200kD_Subunit/Helica	Brr2p	sbU5-200-1	2	r	74601139	74609397		DEAD 1; Helicase_C
1.4	75	Sb01g042980.1	200kD_Subunit/Helica	Brr2p	sbU5-200-2	1	f	66287335	66310630		DEAD 1; Helicase_C
1.4	75	Sb04g000670.1	200kD_Subunit/Helica	Brr2p	sbU5-200-3	4	f	483669	491585		DEAD 1; Helicase_C
1.4	182	Sb10g004680.1	220kD_Subunit	Prp8p	sbU5-220/Prp8a	10	r	4157206	4161154		Mov34 1
1.4	259	Sb05g024780.1	100kD_Subunit	Prp28p	sbU5-100KD-1	5	f	57985781	57987847		DEAD 1; Helicase_C
1.4	259	Sb01g010590.1	100kD_Subunit	Prp28p	sbU5-100KD-2	1	f	9361874	9364490		DEAD 1; Helicase_C
1.4	402	Sb08g016670.1	102KD/Prp6-like	Prp6p	sbU5-102KD-1	8	f	44706445	44709745		Ubiquitin 1; TPR 3
1.4	402	Sb09g029840.1	102KD/Prp6-like	Prp6p	sbU5-102KD-2	9	f	58477998	58480153		Ubiquitin 1; TPR 3
1.4	405	Sb01g013210.1	116kD_Subunit/elonga	Snu114p	sbU5-116-3a	1	r	12221656	12224991		EFG_C 1; GTP_EFTU
1.4	405	Sb04g022030.1	116kD_Subunit/elonga	Snu114p	sbU5-116-3b	4	r	51263579	51266829		EFG_C 1; GTP_EFTU
1.4	413	Sb10g023820.1	116kD_Subunit/elonga	Snu114p	sbU5-116-1a	10	r	52568929	52574922		EFG_C 1; GTP_EFTU 1
1.4	637	Sb10g007680.1	15kD_Subunit	Dib1p	sbU5-15-1	10	f	7494163	7500919		DIMI 1; Thioredoxin
1.4	637	Sb07g020280.1	15kD_Subunit	Dib1p	sbU5-15-2	7	f	52639404	52642066		DIMI 1; Thioredoxin
1.4	755	Sb10g025990.1	40kD_Subunit		sbU5-40	10	r	55310152	55315066		WD-40 7
1.4	1099	Sb04g026080.1	200kD_Subunit/Helica	Brr2p	sbU5-200-3	4	f	55884545	55889508		DEAD 1; Sec63 1; Ru
1.5	223	Sb01g047920.1	U4/U6-15.5K	Snu13p	sbTri15.5-1a-1	1	r	71000989	71002777		Ribosomal_L7Ae 1
1.5	223	Sb01g041420.1	U4/U6-15.5K	Snu13p	sbTri15.5-1a-2	1	r	64743199	64745389		Ribosomal_L7Ae 1
1.5	260	Sb06g024840.1	U4/U6-61KD	Prp31	sbU5-61/Prp31a	6	f	53870068	53876463		Nop 1
1.5	411	Sb04g009590.2	U4/U6-90K/SAP90	Prp3p	sbSAP90-1	4	r	12101128	12105407
1.5	756	Sb01g035220.1	U4/U6-60K/SAP60	Prp4p	sbSAP60	1	r	58737469	58740917		WD-40 7;SFM 1;WD40
1.6	399	Sb02g040460.1	Tri-110KD	SAD1	sbTri110	2	r	74386506	74389007		SART-1 1
1.6	634	Sb02g039630.1	(U4/U6.U5)	Tri-27kD/RY1	sbTri-27kD/RY1	2	r	73684503	73685148
1.6	638	Sb10g027800.1	Tri-65_KD	Snu66p	sbTri65a	10	f	57664857	57669791		UCH 1; ZnF_UBP 1
1.6	753	Sb03g003400.1	hSnu23/FLJ31121	Snu23p	sbSnu23	3	f	3620918	3623916		ZnF_U1 1
1.7	225	Sb06g031870.1	U11/U12-25K	(-99_protein)	sbU11/U12-25K	6	f	60173110	60175437		C2H2 1
1.7	346	Sb01g036600.1	U11/U12-65K		sbU11/U12-65K	1	f	60231230	60236025		RRM 2;PHOSPHOPANTET
1.7	982	Sb02g029740.1	U11/U12-35K		sbU11/U12-35kD	2	f	64829263	64832725		RRM 1
1.7	1101	Sb02g031980.1	U11/U12-31K	(MADP1)	sbU11/U12-31K	2	r	66757791	66758603		RRM 1; CCHC 1

2. Splicing factors

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
2.1	49	Sb03g030670.1	U2AF35		sbU2AF35/AUS-1	3	r	58894441	58896902		RRM 1; CCHC 2;
2.1	49	Sb09g028530.1	U2AF35		sbU2AF35/AUS-2	9	f	57414613	57417199		RRM 1; CCHC 2;
2.1	55	Sb05g026740.1	U2AF65		sbU2AF65a/AULb	5	r	58557608	58562847		RRM 3;
2.1	55	Sb05g025260.2	U2AF65		sbU2AF65a/AULb	5	f	60690046	60695524		RRM 3;
2.1	72	Sb07g021250.1	PTB/hnRNP_I		sbPTB2a	3	r	55911411	55917201		RRM 2
2.1	72	Sb03g028150.1	PTB/hnRNP_I		sbPTB2b	7	f	55185950	55193099		RRM 2
2.1	169	Sb09g021560.1	PTB/hnRNP_I		sbPTB1	9	r	51020514	51025027		RRM 4
2.1	398	Sb06g025810.1	SF1/BBP		sbSF1/BBP-1	6	r	54845283	54848481		RRM 1; CCHC 2; KH
2.1	398	Sb01g038690.1	SF1/BBP		sbSF1/BBP-2	1	f	62196383	62199444		RRM 1; CCHC 2; KH
2.1	409	Sb01g047730.1	U2AF65		sbAUL2	1	f	70817033	70823901		RRM 1
2.1	481	Sb01g035510.1	CBP80	Cbc2p	sbCBP80	1	r	59071197	59087943		MIF4G 1; ARM 3
2.1	553	Sb04g022810.1	U2AF35_related_prote		sbUrp-1	4	r	52406782	52408770		RRM 1; CCCH 2
2.1	553	Sb04g022813.1	U2AF35_related_prote		sbUrp-2	4	r	52410642	52412026		RRM 1; CCCH 2
2.1	635	Sb04g025800.1	CBP20	Cbc1	sbCBP20	4	r	55567645	55571544		RRM 1
2.2	25	Sb01g035680.1	SF2/ASF		sbSRp34	1	r	59282102	59287189		RRM 2
2.2	31	Sb10g005960.1	9G8		sbRSZp22	10	f	5394011	5397197		RRM 1; CCHC 1
2.2	61	Sb07g029000.1	SC35		sbSC35	7	f	64067204	64070371		RRM 1;
2.2	61	Sb02g039740.2	SC35		sbSC35	2	f	73783360	73786509		RRM 1;
2.2	151	Sb01g034200.1	TASR-2		sbSCL33-1	1	f	57649359	57652297		RRM 1
2.2	151	Sb02g040350.1	TASR-2		sbSCL33-2	2	f	74317593	74320703		RRM 1
2.2	204	Sb04g001910.1	Plant_Novel_SR_prote		sbRSp41	4	r	1630859	1634508		RRM 2
2.2	226	Sb06g001100.1	Plant_Novel_SR_prote		sbRSp31-1	6	r	1558852	1562149		RRM 2
2.2	226	Sb01g049590.1	Plant_Novel_SR_prote		sbRSp31-2	1	f	72559585	72564208		RRM 2
2.2	292	Sb05s14002010.1	TASR-2		sbSCL30-1						RRM 1
2.2	292	Sb05g027700.1	TASR-2		sbSCL30-2	5	r	62123686	62128277		RRM 1
2.2	978	Sb01g034590.1	TASR-2		sbSCL28	1	r	58072136	58076409		RRM 1
2.3	255	Sb04g005430.1	SR140		sbSR140-1	4	f	5271044	5276639		Surp 1;RRM 1;RPR 1
2.3	549	Sb07g001010.1	SPF30		sbSPF30	7	r	911856	915600		Tudor 1
2.3	647	Sb10g003990.1	SPF45		sbSPF45	10	f	3524224	3526411		DIII/G-patch domain
2.4	1	Sb03g041830.1	HSP73/HSPA8		SbHSP73-1	3	f	69293017	69295139		Hsp70 1;
2.4	1	Sb03g039360.1	HSP73/HSPA8		SbHSP73-2	3	f	67054051	67057207		Hsp70 1;
2.4	1	Sb01g039390.1	HSP73/HSPA8		SbHSP73-3	1	f	62807357	62810534		Hsp70 1;
2.4	1	Sb04g001140.1	HSP73/HSPA8		SbHSP73-4	4	r	981279	985460		Hsp70 1;
2.4	1	Sb01g039480.1	HSP73/HSPA8		SbHSP73-5	1	r	62899039	62901521		Hsp70 1;
2.4	1	Sb01g039460.1	HSP73/HSPA8		SbHSP73-6	1	r	62876582	62879761		Hsp70 1;
2.4	1	Sb03g039360.1	HSP73/HSPA8		SbHSP73-7	3	f	67054051	67057207		Hsp70 1;
2.4	1	Sb08g018750.1	HSP73/HSPA8		SbHSP73-8	8	f	49117275	49121517		Hsp70 1;
2.4	1	Sb01g039430.1	HSP73/HSPA8		SbHSP73-9	1	f	62841852	62845068		Hsp70 1;
2.4	1	Sb01g039440.1	HSP73/HSPA8		SbHSP73-10	1	r	62851595	62856738		Hsp70 1;
2.4	1	Sb01g039510.1	HSP73/HSPA8		SbHSP73-11	1	r	62928697	62930873		Hsp70 1;
2.4	1	Sb01g039500.1	HSP73/HSPA8		SbHSP73-12	1	r	62921168	62923699		Hsp70 1;
2.4	1	Sb01g039450.1	HSP73/HSPA8		SbHSP73-13	1	r	62870642	62873048		Hsp70 1;
2.4	1	Sb01g039470.1	HSP73/HSPA8		SbHSP73-14	1	f	62883341	62890441		Hsp70 1;
2.4	1	Sb01g010460.1	HSP73/HSPA8		SbHSP73-15	1	r	9277164	9277164		Hsp70 1;
2.4	1	Sb01g039530.1	HSP73/HSPA8		SbHSP73-16	1	r	62934925	62937548		Hsp70 1;
2.4	1	Sb09g022580.1	HSP73/HSPA8		SbHSP73-17	9	r	52235414	52238715		Hsp70 1;
2.4	134	Sb03g040410.1	G10	Cwc14p	sbG10-1	3	r	68029052	68032354		G10 1;
2.4	134	Sb09g022770.2	G10	Cwc14p	sbG10-2	9	r	52399321	52402634		G10 1;
2.4	167	Sb01g012080.1	hSyf3/CRN	Clf1/Syf3p	sbCRN1a-1	1	r	11012281	11017646		TPR 1; HAT 14; TPR
2.4	167	Sb09g020460.1	hSyf3/CRN	Clf1/Syf3p	sbCRN1a-2	9	r	49816954	49821189		TPR 1; HAT 14; TPR
2.4	168	Sb04g001740.1	hSyf3/CRN	Clf1/Syf3p	sbCypE1a-1	4	f	1469118	1470103		Pro_isomerase 1
2.4	168	Sb04g021380.1	hSyf3/CRN	Clf1/Syf3p	sbCypE1a-2	4	f	50404804	50405894		Pro_isomerase 1
2.4	288	Sb10g008460.1	hSyf1	Syf1p	sbSyf1-1	10	r	8648751	8651102		TPR 1;HAT 10;TPRli
2.4	288	Sb02g041110.1	hSyf1	Syf1p	sbSyf1-2	2	r	74961693	74966738		TPR 1;HAT 10;TPRli
2.4	297	Sb04g030200.1	hECM2	Ecm2p	sbECM2-1a-1	4	r	60223218	60227032		RRM 1; CCCH 1
2.4	297	Sb10g004840.1	hECM2	Ecm2p	sbECM2-1a-2	10	r	4282860	4286546		RRM 1; CCCH 1
2.4	407	Sb03g010330.1	SPF27/BCAS2		sbSPF27	3	f	11194117	11198210		BCAS2 1
2.4	414	Sb01g019790.1	hPrp19	Prp19p	sbPrp19a	1	f	21666664	21676244		WD-40 7; Ubox 1
2.4	467	Sb06g001620.1	PRL1	Prp46p	sbPRL1	6	r	2652379	2659988		WD-40 2;WD40like 1
2.4	471	Sb10g029690.1	GCIP_p29	Syf2	sbGCIPp29	10	f	59432387	59434956
2.4	546	Sb03g001570.1	AD-002	Cwc15p	sbAD-002-1	3	r	1426867	1434383		Cwf_Cwc_15 1
2.4	546	Sb10g000650.1	AD-002	Cwc15p	sbAD-002-2	10	r	416803	420110		Cwf_Cwc_15 1
2.4	559	Sb03g044450.1	CDC5	Cef1	sbCDC5-1	3	r	71799425	71805341		SANT 2
2.4	559	Sb08g015280.1	CDC5	Cef1	sbCDC5-2	8	f	40185118	40199687		SANT 2
2.4	640	Sb04g038390.1	beta_catenin-like_1		sbCTNNNBL1	4	r	67810475	67814036		Armadillo 1; ARM 1
2.4	642	Sb01g033760.1	KIAA0560		sbAquarius	1	r	57053558	57063085
2.4	645	Sb04g033860.1	SKIP	Prp45p	sbSKIP	4	r	63767220	63769409		SKIP/SNW 1
2.4	866	Sb10g031190.1	MGC23918		sbMGC23918	10	f	60812542	60815820
2.4	983	Sb07g024100.1	PPIase-like_1		sbPPIase-like1	7	f	59104357	59106955		Pro_isomerase 1
2.4	1100	Sb04g025200.1	hIsy1	Isy1p	sbIsy1	4	r	55024407	55027223		Lsy1 1
2.5	122	Sb08g023260.1	hPrp4	kinase	sbPRP4K-1	8	r	55361620	55366541		Pkinase 1;TyrKc 1;
2.5	220	Sb06g001810.1	TBL1-rp_1		sbTBL1-rp1	6	r	3296581	3309699		WD-40 5; Peptidease
2.5	464	Sb09g002290.1	N-CoR1		sbN-CoR1	9	r	2453103	2460008		SANT 2;Homeodomain_
2.5	474	Sb10g007260.1	FBP-21		sbFBP21	10	r	7052023	7060540		C2H2 1
2.5	543	Sb07g023430.1	Smc-1		sbSmc1	7	f	58360754	58373087		ATP_GTP_A_BS 1;SMC_
2.5	868	Sb03g043740.1	NPW38		sbNPW38	3	r	71003912	71009270		WW 2
2.6	65	Sb01g039330.1	ALY		sbALY-1	1	f	62759836	62763717		RRM 1;
2.6	80	Sb09g030730.2	UAP56		sbUAP56	9	f	59368165	59373018		DEAD 1; Helicase_C
2.6	227	Sb07g020860.1	ALY		sbALY-2a	7	r	53970537	53975849		RRM 1
2.6	342	jgi\|Sorbi1\|4998392\|estExt_fgenesh1_pg.C_chr_14086	Srm160-like		sbSRM102						PWI 1
2.6	345	Sb03g046480.1	RNPS1		sbSR45/sbRNPS1	3	f	73594255	73599601		RRM 1
2.6	348	Sb07g000840.1	Magoh		sbMagoh	7	f	721355	725121		Mago_nashi 1
2.6	417	Sb04g038330.1	Nuk-34/eIF4A3/DDX48		sbDDX48/eIF4A3-1	4	r	67765908	67769284		DEAD 1; Helicase_C
2.6	480	Sb09g003130.1	Y14		sbY14-1	9	f	3536740	3540964		RRM 1; RBMB 4
2.6	480	Sb03g015351.1	Y14		sbY14-2	3	r	21978244	21984644		RRM 1; RBMB 4
2.6	650	Sb01g010910.1	pinin		sbPinin	1	f	9785518	9788960		Pinin/SDK/memA 1
2.7	13	Sb01g044300.1	Prp22	Prp22	sbPrp22	1	r	67439258	67444869		DEAD 1; Helicase_C
2.7	415	Sb02g036950.1	Prp18	Prp18	sbPrp18-1	2	r	71403458	71406906		Prp18 1; SFM 1
2.7	416	Sb01g033210.1	Prp18	Prp18	sbPrp17-1	1	r	56426575	56429931		WD-40 7;
2.7	551	Sb07g002300.1	Slu7	Slu7p	sbSLU7-1a	7	f	2508825	2512821
2.7	747	Sb08g003460.1	Prp17	Prp17p	sbPrp17	8	f	3908261	3914014		WD-40 6
2.7	1102	Sb10g005130.1	Prp22	Prp22	sbPrp22-3	10	f	4598997	4616466		DEAD 1;Helicase_C
2.8	13	Sb02g034295.1	Prp2		sbPrp2-1a	2	r	68774419	68783436		DEAD 1; Helicase_C
2.8	293	Sb03g009130.1	SRm300		sbSRM300like	3	r	9901414	9906932		RRM 1; Filamin/ABP28
2.8	296	Sb07g004090.1	Prp5		sbPrp5-1a-1	7	r	5136009	5140142		DEAD 1; Helicase_C
2.8	296	Sb07g002100.1	Prp5		sbPrp5-1a-2	7	r	2239909	2242749		DEAD 1; Helicase_C
2.8	478	Sb01g040100.1	hTra-2/SFRS10		sbTra/SFRS1	1	f	63488908	63492310		Sm 1
2.8	754	Sb01g037410.1	Prp5		sbPrp5	1	r	60973109	60977586		DEAD 1;Helicase_C
2.8	979	Sb01g009610.1	hDbr1	dbr1	sbDbr1	1	r	8379575	8383728		Metallophos 1;DBRI

3. Splicing regulation

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
3.1	71	Sb02g011360.1	Lammer/CLK	kinase	sbAFC1/sbAFC2	2	r	18841285	18846101		Pkinase 1; TyrKc 1
3.1	71	Sb04g024880.1	Lammer/CLK	kinase	sbAFC1/sbAFC2	3	r	66954694	66958899		Pkinase 1; TyrKc 1
3.1	71	Sb03g039230.2	Lammer/CLK	kinase	sbAFC1/sbAFC2	4	r	54782410	54785592		Pkinase 1; TyrKc 1
3.1	135	Sb01g008130.1	Kinase	SRPK2	sbSRPK2a	1	r	7016653	7020853		Pkinase 1; TyrKc 1
3.1	209	Sb02g032180.1	Kinase	SRPK1	sbSRPK1a-1	2	r	66955852	66959066		Pkinase 1; TyrKc 1
3.1	290	Sb03g026540.1	Kinase	Lammer/CLK_kinase	sbAFC3	3	f	53340202	53344656		Pkinase 1;TyrKc 1;S
3.2	45	Sb03g043760.1	Glycine-Rich_RBD		sbGRBP1d/GRBP1c/GRBP1e-1	3	f	71021438	71023571		RRM 1
3.2	45	Sb08g015580.1	Glycine-Rich_RBD		sbGRBP1d/GRBP1c/GRBP1e-2	8	f	41703743	41706928		RRM 1
3.2	109	Sb08g022740.1	Glycine-Rich_RBD		sbGRP7/sbGRBP3a-1	8	f	54793370	54794394		RRM 1
3.2	109	Sb01g012300.1	Glycine-Rich_RBD		sbGRP7/sbGRBP3a-2	1	r	11362384	11363490		RRM 1
3.3	29	Sb05g025410.1	hnRNP_A/B		SbRNPA/B-1	5	f	58694336	58695832		RRM 2
3.3	29	Sb10g022380.1	hnRNP_A/B		SbRNPA/B-2	10	f	49996564	50004819		RRM 2
3.3	29	Sb02g005620.1	hnRNP_A/B		SbRNPA/B-3	2	f	6666220	6672572		RRM 2
3.3	29	Sb02g037690.1	hnRNP_A/B		SbRNPA/B-4	2	f	71988051	71993802		RRM 2
3.3	29	Sb02g005670.1	hnRNP_A/B		SbRNPA/B-5	2	r	6709471	6715272		RRM 2
3.3	149	Sb03g010380.1	hnRNP_A/B		sbUBA2a	3	r	11221916	11224857		RRM 2
3.3	257	Sb03g027820.1	hnRNP_A/B		sbUBA2c	3	r	55477383	55480838		RRM 2
3.3	418	Sb01g019610.2	hnRNP_A/B		sbRNPA/B_1	1	r	21385534	21390137		RRM 2
3.3	648	Sb04g007860.1	hnRNP_A/B		sbRNPA/B_8b	4	r	8348794	8352372		RRM 2
3.3	655	Sb03g027920.1	hnRNP_A/B		sbRNP_N1	3	f	55631015	55633994		RRM 2;HUDSXLRNA 2
3.4	93	Sb06g024100.2	hnRNP_R/Q		hnRNP-R3/sbPA/B	6	f	53230147	53234848		RRM 3
3.4	120	Sb05g002300.1	hnRNP_R/Q		sb-hnRNP-R2	5	f	2439365	2445468		RRM 3
3.4	179	Sb07g001490.1	hnRNP_R/Q		sb-hnRNP-R1	7	r	1594958	1599266		RRM 3
3.4	183	Sb03g045340.1	CUG-BP		sbCUG-BP1-1	3	f	72581636	72587512		RRM 3; HUDSXLRNA 4
3.4	183	Sb09g018610.1	CUG-BP		sbCUG-BP1-2	9	f	46468351	46473657		RRM 3; HUDSXLRNA 4
3.4	337	Sb02g014690.2	_		sbFCA1	2	r	28678566	28691491		RRM 2; WW 1
3.4	350	Sb01g002150.2	hnRNP_G		sb-hnRNP-G2	1	f	1817828	1820111		RRM 1; CCHC 1
3.4	555	Sb02g032160.1	hnRNP_P2		sb-hnRNP-P	2	r	66938771	66943625		RRM 1; ZnF_RBZ 2
3.4	639	Sb01g014200.1	hnRNP_E1/E2		sb-hnRNP-E	1	r	13405019	13411009		KH 3
3.4	746	Sb09g029780.1	hnRNP_F/hnRNP_H		sb-hnRNP-F/AtRNPH/F_1	9	f	58423014	58425221		RRM 2
3.4	746	Sb09g029770.1	hnRNP_F/hnRNP_H		sb-hnRNP-F/AtRNPH/F_2	9	f	58419270	58421241		RRM 2
3.4	869	Sb01g011910.1	_		hnRNP_G	1	f	10824355	10829198		RRM 1; CCHC 1
3.5	107	Sb03g033140.1	hnRNP-like_5		sbAth1	3	r	61526953	61529811		HANP4_PAI-RBP! 1
3.5	107	Sb03g027110.1	hnRNP-like_5		sbAth2	3	r	54391074	54395753		HANP4_PAI-RBP! 1
3.5	107	Sb09g030400.1	hnRNP-like_5		sbAth3	9	f	58927051	58929810		HANP4_PAI-RBP! 1
3.5	137	Sb05g024850.1	hnRNP-like_1		sbUBP1b	5	r	58019020	58026129		RRM 3
3.5	146	Sb01g016170.1	hnRNP-like_3		sbRBP45a	1	f	15945001	15950690		RRM 3
3.5	410	Sb02g026820.1	hnRNP-like_4		sbRBP47c	2	f	62037341	62041307		RRM 3
3.5	636	Sb01g045570.1	hnRNP-like_3		sbRBP45d	1	r	68649376	68653707		RRM 3

4. Novel spliceosome proteins

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
4.1	148	Sb02g003760.1	eIF3	sub2	sb-eIF3sub2a	2	r	4191466	4195323		WD40 4
4.1	206	Sb03g043780.1	hTHO2		sbTHO2-1	3	r	71027173	71046193		Tho2
4.1	206	Sb03g043780.1	hTHO2		sbTHO2-2	3	r	71027173	71046193		Tho2
4.1	206	Sb01g006520.1	hTHO2		sbTHO2-3	1	r	5500717	5516501		Tho2
4.1	254	Sb04g034220.1	KIAA0983		sbKIAA0983-1	4	f	64048823	64054560		Fimp 1
4.1	291	Sb02g006500.1	eIF3_sub6		sb-eIF3sub6	2	r	8148964	8152985
4.1	335	Sb01g000820.1	C21orf66		sbC21orf66	1	f	769899	773305
4.1	400	Sb01g049910.1	hHPR1		sbHPR1	1	r	Sb01g049910	72913325
4.1	483	Sb04g003360.1	HsKin17	Rts2p	sbKin17-1	4	r	3242740	3244500
4.1	483	Sb03g001900.1	HsKin17	Rts2p	sbKin17-2	3	r	1736043	1737370
4.1	541	Sb06g033360.1	CF_I-25kD		sbCFI-25kD-1	6	r	61332808	61336880
4.1	976	Sb06g003570.1	CPSF_160K		sbCPSF-160k	6	r	7713986	7722343
4.1	1205	Sb07g019840.1	CF_I-25kD		sbCFI-25kD	7	r	51065435	51067458
4.2	32	Sb02g017910.1	PAB1/PAB2		sbPABP1/sbPAB1-1	2	r	42662956	42668243		RRM 4
4.2	32	Sb06g021850.1	PAB1/PAB2		sbPABP1/sbPAB1-2	6	r	51043345	51049290		RRM 4
4.2	468	Sb01g039310.1	PAB1/PAB2		sbPABP6/sbPAB7	1	r	62748022	62752080
4.3	69	Sb03g004420.1	p72		p72-4/p72-3/p72-5	3	f	4674079	4680235		DEAD 1; Helicase_C
4.3	69	Sb03g025240.2	p72		p72-4/p72-3/p72-5	3	r	50655913	50660894		DEAD 1; Helicase_C
4.3	100	Sb03g043450.1	p72		p72-1	3	r	70766975	70770667		DEAD 1; Helicase 1
4.3	100	Sb03g002860.1	p72		p72-2	3	f	2778326	2782917		DEAD 1; Helicase 1
4.3	136	Sb10g000500.1	KIAA0052		sbKIAA0052a-1	10	f	295269	303074		DEAD 1; DSHCT 1; H
4.3	136	Sb03g003740.1	KIAA0052		sbKIAA0052a-2	3	r	3998551	4005904		DEAD 1; DSHCT 1; H
4.3	339	Sb01g046570.1	hDbp5	Dbp5p	sbDbp5	1	r	69740050	69744396
4.3	462	Sb01g035760.1	Abstrakt	(Ded1p)	sbAbstrakt-a	1	f	59403617	59406931
4.3	654	Sb03g002030.1	DDX35		sbDDX35	3	r	1878538	1890206
4.4	404	Sb07g024330.1	KIAA0073		sbKIA0073	7	r	59436149	59442018
4.4	652	Sb10g002010.1	PPIase-like_3		sbPPIL3	10	f	1670932	1672093
4.4	745	Sb01g043790.1	Cyp-60		sbCYP-60	1	f	66889019	66892324
4.4	751	Sb03g026040.1	SDCCAG10		sbSDCCAG10	3	r	52382674	52387084
4.5	54	Sb06g020890.2	CDCL2_p110		sbCDCL2p110-1	4	f	55007306	55010612		Pkinase_Tyr 1; Pkin
4.5	54	Sb04g025180.1	CDCL2_p110		sbCDCL2p110-1	6	f	50296427	50301199		Pkinase_Tyr 1; Pkin
4.5	70	Sb01g046740.1	RNPC2		sbNPC2a/sbNPC2b	1	r	24395491	24402150		RRM 2
4.5	70	Sb01g021020.1	RNPC2		sbNPC2a/sbNPC2b	1	f	69886481	69893153		RRM 2
4.5	99	Sb01g034070.3	IMP3		sbIMP3/KOC	1	f	57460960	57465601		KH 4
4.5	180	Sb02g010740.1	RBM5		sbRBM5-1	2	r	16722425	16729439		G-patch 1; RRM 2;
4.5	180	Sb03g033240.1	RBM5		sbRBM5-2	3	r	61581185	61590238		G-patch 1; RRM 2;
4.5	184	Sb01g021230.1	PMSCL2		sbPMSCL2-1a	1	f	24757813	24764766		3_5_exonuc 1; HRDC
4.5	184	Sb01g046585.1	PMSCL2		sbPMSCL2-1b	1	r	69749761	69755492		3_5_exonuc 1; HRDC
4.5	207	Sb04g029240.1	DKFZP586O0120		sbDKFZP586O0120-1	4	f	59245763	59247209		DUF1754 1
4.5	207	Sb04g000960.1	DKFZP586O0120		sbDKFZP586O0120-2	4	f	797151	800603		DUF1754 1
4.5	261	Sb09g027690.1	RACK1	Asc1p	sbRACK1a-1	9	f	56765730	56768070		WD40 5
4.5	261	Sb03g031520.1	RACK1	Asc1p	sbRACK1a-2	3	f	59890362	59892553		WD40 5
4.5	289	Sb01g033900.2	AcinusL		sbAcinusL	1	f	57319789	57324770		SAP 1
4.5	294	Sb03g013120.1	hSmu-1/FLJ10805		sbSmu-1	3	r	15945691	15951359
4.5	334	Sb03g039200.1	TIP-49	Rvb1p	sbTIP49-1	3	f	66936076	66940786
4.5	334	Sb03g039200.1	TIP-49	Rvb1p	sbTIP49-2	3	f	66936076	66940786
4.5	340	Sb08g001090.1	UBL5p	Hub1p	sbUBL5a-1	8	r	1032359	1035193
4.5	340	Sb04g026620.1	UBL5p	Hub1p	sbUBL5a-2	4	r	56519181	56519402
4.5	343	Sb03g029810.1	KIAA1604		sbKIAA1604	3	f	58059967	58066160
4.5	406	Sb01g018930.1	CA150		sbCA150	1	f	19873425	19883753
4.5	408	Sb02g039100.1	DGSI_protein		sbDGCR14	2	r	73223764	73225607
4.5	465	Sb02g037250.2	SF4/F23858		sbSF4	2	f	71594216	71599202
4.5	473	Sb01g039130.1	NOSIP		sbNOSIP	1	r	62572592	62574275
4.5	476	Sb08g021110.1	TFIP11/TIP39		sbTFIP11/TIP39a	8	f	52569981	52572884
4.5	484	Sb02g037530.1	TIP-48		sbRuvB/TIP48a	2	f	71805395	71808488
4.5	544	Sb02g003310.1	PUF60		sbCP33/PUF60like	2	r	3771330	3773294		Sm 1
4.5	552	Sb02g000480.1	Ku70		sbKu70-1	2	r	433696	443723
4.5	552	Sb02g004740.1	Ku70		sbKu70-2	2	f	5472453	5484548
4.5	554	Sb04g009270.1	ZNF183		sbZNF183a	4	f	11394707	11399775
4.5	556	Sb05g002790.2	MFAP1		sbMFAP1a	5	r	2993779	2995648
4.5	633	Sb04g022240.1	MGC4238		sbMORG1	4	f	51665974	51669769
4.5	643	Sb02g034580.1	PMSCL2		sbPMSCL2-3	2	r	69114934	69121702
4.5	644	Sb08g001030.1	PMSCL2		sbRED-1	8	f	962769	968929
4.5	644	Sb05g002755.1	PMSCL2		sbRED-2	5	r	2941302	2946616
4.5	646	Sb04g023010.1	FLJ90157/DKFZp434E22		sbPSP1	4	f	52667891	52675063
4.5	649	Sb03g026390.1	FLJ10374		sbCWF16-1	3	f	53180133	53182549
4.5	651	Sb01g004930.1	Cactin		sbCactin	1	r	4025132	4030964
4.5	748	Sb03g029860.1	KIAA0853		sbKIAA0853	3	r	58113825	58119660
4.5	749	Sb01g047860.1	FLJ10634		sbCAJ1/FLJ10634	1	f	70988533	70991252
4.5	750	Sb10g014430.1	FLJ10206		sbFLJ10206	10	f	23551001	23566932
4.5	871	Sb10g002430.1	MGC13125	Cwc26p	sbMGC13125	10	r	2100524	2104953
4.5	977	Sb01g040420.1	SPF31		sbSPF31/Jiv	1	r	63776794	63780999

5. Possible splicing related proteins

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
5.1	106	Sb10g030460.1	Splicing_factor_like		sbSFL	10	f	60091845	60095621		RRM 1
5.1	205	Sb04g007950.1	Splicing_factor_lik_	3	sbSFL3	4	f	8603308	8608887		KH_1 2
5.1	224	Sb02g004430.1	Splicing_factor_like		sbSFL6a	2	f	5008054	5013501		Pro_isomerase 1
5.1	542	Sb02g012590.1	Splicing_factor_like		sbSFL6b	2	f	21631988	21632515
5.1	547	Sb02g006010.2	Splicing_factor_like		sbSFL5	2	r	7260998	7273461
5.1	641	Sb02g012970.1	Splicing_factor_like		sbSFL4	2	r	22660518	22663848
5.2	121	Sb01g035410.2	DNA_binding_protein_		sbDBP1a-1	1	f	58958580	58962760		NOP5NT 1; NOSIC 1;
5.2	121	Sb03g044260.1	DNA_binding_protein_		sbDBP1a-2	3	f	71609254	71613201		NOP5NT 1; NOSIC 1;
5.2	333	Sb03g005050.1	RNA_binding_2		sbRBD2b	3	r	5254712	5256714
5.2	338	Sb09g030580.1	DNA_binding_protein_		sbDBP2a	9	f	59130763	59147065
5.2	341	Sb02g006770.1	RNA_binding_1		sbRBD1b	2	f	8645912	8654651
5.2	401	Sb02g011330.1	Chloroplast	RNA_Binding_31	sbCP31a	2	r	18828382	18831456
5.2	1204	Sb06g016070.1	Similar_to_RNA_bindi		sbRBD5	6	f	44509820	44512588
5.3	258	Sb10g006840.1	SPT5		sbSPT5a-1	10	r	6532352	6545778		KOW 1; Supt5 2
5.3	258	Sb10g006840.1	SPT5		sbSPT5a-2	10	r	6532352	6545778		KOW 1; Supt5 2
5.3	295	Sb01g001500.1	Elongation_Factor(M)		sbEFMa	1	f	1365384	1378197
5.3	477	Sb09g020640.1	Elongation_Factor		sbEF2-1	9	r	50036779	50040107
5.3	477	Sb03g042090.1	Elongation_Factor		sbEF2-2	3	f	69520131	69524689
5.3	759	Sb06g023840.1	Elongation_Factor		sbEF1	6	r	52875234	52879128
5.4	1096	Sb03g009740.1	Glycine_Rich_Protein		sbGRPs-4	3	r	10490075	10490799

Database

10 Plant Species

Species Comparisons

Gene Groups

Novel Splicing-related Proteins

Specific Proteins

Sorghum bicolor (Sb)

1. Small nuclear Ribonucleoprotein (snRNP)

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

2. Splicing factors

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

3. Splicing regulation

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

4. Novel spliceosome proteins

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

5. Possible splicing related proteins

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!