Physcomitrella patens (Pp)
1. Small nuclear Ribonucleoprotein (snRNP)
Group |
CIWOG |
Gene |
hHomologs |
SeHomologs |
Gene Name |
Chr |
str |
from |
to |
Txn |
Domains |
Transcripts |
|
1.1 | 108 | e_gw1.46.90.1 | SmD2 | ppSmD2-1 | 46 | r | 1683769 | 1684529 | Sm 1 | ||||
1.1 | 108 | e_gw1.288.28.1 | SmD2 | ppSmD2-2 | 288 | f | 355675 | 356421 | Sm 1 | ||||
1.1 | 108 | fgenesh1_pg.scaffold_181000018 | SmD2 | ppSmD2-3 | 181 | f | 254628 | 255542 | Sm 1 | ||||
1.1 | 147 | e_gw1.726.1.1 | SmD1 | SmD1 | ppSmD1-a1 | 726 | f | 6985 | 7964 | Sm 1 | |||
1.1 | 147 | estExt_gwp_gw1.C_370112 | SmD1 | SmD1 | ppSmD1-a2 | 37 | r | 623913 | 625214 | Sm 1 | |||
1.1 | 147 | estExt_gwp_gw1.C_1160015 | SmD1 | SmD1 | ppSmD1-a3 | 116 | f | 65571 | 66898 | Sm 1 | |||
1.1 | 181 | estExt_fgenesh1_pm.C_840022 | SmE | SmE | ppSmE-a1 | 84 | f | 941266 | 941529 | Sm 1 | |||
1.1 | 181 | estExt_fgenesh1_kg.C_2090005 | SmE | SmE | ppSmE-a2 | 209 | r | 655902 | 656165 | Sm 1 | |||
1.1 | 181 | e_gw1.26.139.1 | SmE | SmE | ppSmE-a3 | 26 | f | 678454 | 678717 | Sm 1 | |||
1.1 | 221 | e_gw1.36.199.1 | LSM4 | LSm4 | ppLSM4 | 36 | f | 2163182 | 2164552 | Sm 1 | |||
1.1 | 336 | estExt_fgenesh1_pg.C_320105 | SmB | SmB1 | ppSmB-a1 | 32 | f | 1402089 | 1402544 | Sm 1 | |||
1.1 | 336 | estExt_Genewise1.C_3330059 | SmB | SmB1 | ppSmB-a2 | 333 | f | 390385 | 390819 | Sm 1 | |||
1.1 | 336 | gw1.333.63.1 | SmB | SmB1 | ppSmB-a3 | 333 | r | 388029 | 388463 | Sm 1 | |||
1.1 | 336 | gw1.446.24.1 | SmB | SmB1 | ppSmB-a4 | 446 | r | 8006 | 8440 | Sm 1 | |||
1.1 | 344 | estExt_fgenesh1_pg.C_330029 | SmD3 | SmD3 | ppSmD3-b | 33 | r | 303656 | 305563 | Sm 1 | |||
1.1 | 344 | fgenesh1_pm.scaffold_33000008 | SmD3 | SmD3 | ppSmD3-b | 33 | f | 367634 | 369541 | Sm 1 | |||
1.1 | 469 | estExt_gwp_gw1.C_2180063 | SmG | SmG | ppSmG-a-1 | 218 | r | 581027 | 581753 | Sm 1 | |||
1.1 | 469 | estExt_Genewise1.C_4750009 | SmG | SmG | ppSmG-a-2 | 475 | f | 59261 | 59883 | Sm 1 | |||
1.1 | 472 | estExt_gwp_gw1.C_1900008 | LSM7 | LSm7 | ppLSM7-1 | 190 | f | 254836 | 256294 | Sm 1 | |||
1.1 | 472 | estExt_Genewise1.C_350284 | LSM7 | LSm7 | ppLSM7-2 | 35 | f | 1978745 | 1980293 | Sm 1 | |||
1.1 | 479 | estExt_gwp_gw1.C_3360028 | LSM2 | LSm2 | ppLSM2 | 336 | f | 79088 | 79970 | Sm 1 | |||
1.1 | 539 | estExt_Genewise1.C_280109 | LSM5 | LSm5 | ppLSM5/SAD1 | 28 | f | 887948 | 888833 | Sm 1 | |||
1.1 | 540 | e_gw1.219.49.1 | SmF | SmF | ppSmF-1 | 219 | r | 207424 | 208250 | Sm 1 | |||
1.1 | 540 | estExt_Genewise1.C_460191 | SmF | SmF | ppSmF-2 | 46 | r | 1696819 | 1697731 | Sm 1 | |||
1.1 | 545 | e_gw1.142.63.1 | LSM1 | LSm1 | ppLSM1b-1 | 142 | r | 299541 | 301950 | Sm 1 | |||
1.1 | 545 | estExt_fgenesh1_pg.C_460132 | LSM1 | LSm1 | ppLSM1b-2 | 46 | f | 1718425 | 1720753 | Sm 1 | |||
1.1 | 548 | estExt_fgenesh1_pg.C_170228 | LSM6 | LSm6 | ppLSM6a-1 | 17 | f | 2581030 | 2582406 | Sm 1 | |||
1.1 | 548 | estExt_Genewise1.C_1620125 | LSM6 | LSm6 | ppLSM6a-2 | 162 | r | 899918 | 900889 | Sm 1 | |||
1.1 | 550 | estExt_fgenesh1_pg.C_1540070 | LSM8 | LSm8 | ppLSM8 | 154 | f | 850513 | 852049 | Sm 1 | |||
1.1 | 561 | estExt_gwp_gw1.C_160192 | LSM3 | LSm3 | ppLSM3a | 16 | r | 2439085 | 2440420 | Sm 1 | |||
1.2 | 92 | e_gw1.88.197.1 | Luc7 | ppLuc7a | 88 | f | 201511 | 205155 | DUF259 1 | ||||
1.2 | 92 | e_gw1.402.25.1 | Luc7 | ppLuc7b | 402 | f | 249094 | 254156 | DUF259 1 | ||||
1.2 | 208 | e_gw1.30.35.1 | Prp39 | ppPrp39a-1 | 30 | r | 1290890 | 1295673 | HAT 7; TPR-like 1 | ||||
1.2 | 208 | e_gw1.164.9.1 | Prp39 | ppPrp39a-2 | 164 | r | 78638 | 83221 | HAT 7; TPR-like 1 | ||||
1.2 | 208 | estExt_Genewise1.C_590198 | Prp39 | ppPrp39a-3 | 59 | r | 1253771 | 1259456 | HAT 7; TPR-like 1 | ||||
1.2 | 403 | e_gw1.42.134.1 | U1-70K | Snp1 | ppU1-70K-1 | 42 | f | 2162695 | 2165062 | RRM 1 | |||
1.2 | 403 | e_gw1.332.23.1 | U1-70K | Snp1 | ppU1-70K-2 | 332 | r | 267376 | 269534 | RRM 1 | |||
1.2 | 463 | estExt_fgenesh1_pg.C_1550066 | U1C_Subunit | Yhc1 | ppU1C-1 | 155 | f | 925114 | 929005 | C2H2 1; mrCtermi 3 | |||
1.2 | 463 | fgenesh1_pg.scaffold_267000046 | U1C_Subunit | Yhc1 | ppU1C-2 | 267 | r | 563816 | 566347 | C2H2 1; mrCtermi 3 | |||
1.2 | 475 | estExt_fgenesh1_pg.C_1740055 | FBP11 | Prp40 | ppPrp40a | 174 | f | 642693 | 653028 | WW 2; FF 5 | |||
1.2 | 538 | e_gw1.22.82.1 | Related_to_Luc7-like | Luc7 | ppLuc7-rl | 22 | r | 1345379 | 1349634 | DUF259 1 | |||
1.3 | 170 | e_gw1.156.105.1 | SF3a120/SAP114_Subun | Prp21p | ppSAP114-1a-1 | 156 | f | 539564 | 542280 | SWAP/Surp 2 | |||
1.3 | 170 | estExt_gwp_gw1.C_30503 | SF3a120/SAP114_Subun | Prp21p | ppSAP114-1a-2 | 3 | f | 4102132 | 4104960 | SWAP/Surp 2 | |||
1.3 | 203 | estExt_gwp_gw1.C_110154 | SF3b160/SAP155_Subun | Hsh155 | ppSAP155 | 11 | r | 2057859 | 2061737 | HEAT 1; ARM 2; SAP | |||
1.3 | 222 | e_gw1.98.18.1 | SF3b150/SAP145_Subun | Cus1p | ppSF3b150-1 | 98 | r | 55097 | 61806 | PSP 1; DUF382 1 | |||
1.3 | 222 | estExt_gwp_gw1.C_5050010 | SF3b150/SAP145_Subun | Cus1p | ppSF3b150-2 | 505 | r | 64972 | 71580 | PSP 1; DUF382 1 | |||
1.3 | 228 | estExt_Genewise1.C_1030037 | SF3b_14b/PHP5A | Rds3p | ppSF3b_14b/PHP5A-a | 103 | f | 575936 | 576268 | UPF0123 1 | |||
1.3 | 256 | estExt_fgenesh1_pg.C_1880047 | SF3b120/SAP130_Subun | Rse1p | ppSAP130a-1 | 188 | r | 595960 | 600641 | CPSF_A 1; WD40-like | |||
1.3 | 256 | estExt_Genewise1.C_3910042 | SF3b120/SAP130_Subun | Rse1p | ppSAP130a-2 | 391 | f | 203338 | 207755 | CPSF_A 1; WD40-like | |||
1.3 | 256 | fgenesh1_pg.scaffold_197000028 | SF3b120/SAP130_Subun | Rse1p | ppSAP130a-3 | 197 | r | 185777 | 190174 | CPSF_A 1; WD40-like | |||
1.3 | 347 | e_gw1.87.54.1 | U2B''_Subunit | Msl1p | ppU2B'' | 87 | f | 790009 | 792392 | RRM 2 | |||
1.3 | 412 | estExt_fgenesh1_pg.C_1520025 | U2A'_Subunit | Lea1p | ppU2A-1 | 152 | r | 228919 | 232176 | LRR 4 | |||
1.3 | 412 | gw1.134.46.1 | U2A'_Subunit | Lea1p | ppU2A-2 | 134 | r | 211037 | 213891 | LRR 4 | |||
1.3 | 412 | estExt_Genewise1.C_490074 | U2A'_Subunit | Lea1p | ppU2A-3 | 49 | f | 863589 | 866698 | LRR 4 | |||
1.3 | 460 | estExt_Genewise1.C_630098 | p14 | Snu17p | ppP14-1 | 63 | f | 1480107 | 1480475 | RRM 1 | |||
1.3 | 461 | estExt_gwp_gw1.C_2180031 | p14 | Snu17p | ppSAP61 | 218 | r | 353439 | 357853 | C2H2 1 | |||
1.3 | 466 | estExt_gwp_gw1.C_2150124 | SF3b_10 | ppSF3b10a | 215 | f | 839026 | 840286 | SF3b10 1 | ||||
1.3 | 470 | estExt_gwp_gw1.C_700168 | SF3b53/SAP49_Subunit | Hsh49p | ppSAP49a | 70 | r | 1574737 | 1577928 | RRM 2 | |||
1.3 | 758 | gw1.29.96.1 | SF3a66/SAP62_Subunit | Prp11p | ppSAP62-1 | 29 | f | 928076 | 930862 | C2H2 1 | |||
1.3 | 758 | fgenesh1_pg.scaffold_318000042 | SF3a66/SAP62_Subunit | Prp11p | ppSAP62-2 | 318 | f | 427519 | 430488 | C2H2 1 | |||
1.4 | 44 | estExt_fgenesh1_pm.C_4310002 | 116kD_Subunit/elonga | Snu114p | ppU5-116-2a | 431 | f | 60560 | 64010 | EFG_C 1; GTP_EFTU | |||
1.4 | 44 | estExt_gwp_gw1.C_1380085 | 116kD_Subunit/elonga | Snu114p | ppU5-116-2b | 138 | f | 367820 | 370409 | EFG_C 1; GTP_EFTU | |||
1.4 | 44 | estExt_Genewise1.C_1380094 | 116kD_Subunit/elonga | Snu114p | ppU5-116-2c | 138 | r | 414217 | 417476 | EFG_C 1; GTP_EFTU | |||
1.4 | 44 | estExt_Genewise1.C_1380097 | 116kD_Subunit/elonga | Snu114p | ppU5-116-2d | 3495 | f | 108 | 2674 | EFG_C 1; GTP_EFTU | |||
1.4 | 44 | estExt_Genewise1.C_4310001 | 116kD_Subunit/elonga | Snu114p | ppU5-116-2e | 431 | r | 43342 | 46996 | EFG_C 1; GTP_EFTU | |||
1.4 | 44 | estExt_Genewise1.C_34950001 | 116kD_Subunit/elonga | Snu114p | ppU5-116-2f | 138 | r | 340853 | 344652 | EFG_C 1; GTP_EFTU | |||
1.4 | 75 | e_gw1.84.11.1 | 200kD_Subunit/Helica | Brr2p | ppU5-200-1 | 84 | f | 698434 | 716030 | DEAD 1; Helicase_C | |||
1.4 | 75 | estExt_Genewise1.C_280123 | 200kD_Subunit/Helica | Brr2p | ppU5-200-2 | 28 | f | 957712 | 965188 | DEAD 1; Helicase_C | |||
1.4 | 182 | estExt_gwp_gw1.C_4380024 | 220kD_Subunit | Prp8p | ppU5-220/Prp8a-1 | 438 | r | 126689 | 134523 | Mov34 1 | |||
1.4 | 182 | estExt_Genewise1.C_1010009 | 220kD_Subunit | Prp8p | ppU5-220/Prp8a-2 | 101 | f | 58682 | 66750 | Mov34 1 | |||
1.4 | 259 | e_gw1.11.51.1 | 100kD_Subunit | Prp28p | ppU5-100KD-1 | 11 | r | 1445195 | 1450617 | DEAD 1; Helicase_C | |||
1.4 | 259 | estExt_Genewise1.C_760056 | 100kD_Subunit | Prp28p | ppU5-100KD-2 | 76 | f | 591177 | 597116 | DEAD 1; Helicase_C | |||
1.4 | 402 | estExt_Genewise1.C_160130 | 102KD/Prp6-like | Prp6p | ppU5-102KD-1 | 16 | f | 2194179 | 2196995 | Ubiquitin 1; TPR 3 | |||
1.4 | 402 | estExt_Genewise1.C_2120013 | 102KD/Prp6-like | Prp6p | ppU5-102KD-2 | 212 | r | 51187 | 54027 | Ubiquitin 1; TPR 3 | |||
1.4 | 405 | estExt_gwp_gw1.C_680076 | 116kD_Subunit/elonga | Snu114p | ppU5-116-3 | 68 | f | 314528 | 318386 | EFG_C 1; GTP_EFTU | |||
1.4 | 413 | estExt_fgenesh1_pm.C_1170010 | 116kD_Subunit/elonga | Snu114p | ppU5-116-1a-1 | 117 | f | 917911 | 923392 | EFG_C 1; GTP_EFTU 1 | |||
1.4 | 413 | estExt_fgenesh1_pm.C_2140004 | 116kD_Subunit/elonga | Snu114p | ppU5-116-1a-2 | 214 | f | 242136 | 247564 | EFG_C 1; GTP_EFTU 1 | |||
1.4 | 637 | estExt_Genewise1.C_1410065 | 15kD_Subunit | Dib1p | ppU5-15 | 141 | r | 732592 | 733344 | DIMI 1; Thioredoxin | |||
1.4 | 755 | e_gw1.72.72.1 | 40kD_Subunit | ppU5-40-1 | 72 | f | 1289233 | 1291550 | WD-40 7 | ||||
1.4 | 755 | estExt_gwp_gw1.C_1170033 | 40kD_Subunit | ppU5-40-2 | 117 | f | 546198 | 548940 | WD-40 7 | ||||
1.4 | 1099 | e_gw1.41.16.1 | 200kD_Subunit/Helica | Brr2p | ppU5-200-3 | 41 | r | 2121072 | 2127790 | DEAD 1; Sec63 1; Ru | |||
1.5 | 223 | estExt_gwp_gw1.C_280040 | U4/U6-15.5K | Snu13p | ppTri15.5-1a-1 | 28 | r | 313617 | 314003 | Ribosomal_L7Ae 1 | |||
1.5 | 223 | estExt_gwp_gw1.C_650023 | U4/U6-15.5K | Snu13p | ppTri15.5-1a-2 | 65 | r | 150885 | 151271 | Ribosomal_L7Ae 1 | |||
1.5 | 223 | estExt_Genewise1.C_340284 | U4/U6-15.5K | Snu13p | ppTri15.5-1a-3 | 34 | r | 1728383 | 1728769 | Ribosomal_L7Ae 1 | |||
1.5 | 223 | estExt_Genewise1.C_650018 | U4/U6-15.5K | Snu13p | ppTri15.5-1a-4 | 65 | f | 136621 | 137007 | Ribosomal_L7Ae 1 | |||
1.5 | 260 | fgenesh1_pm.scaffold_154000005 | U4/U6-61KD | Prp31 | ppU5-61/Prp31a | 154 | f | 295513 | 298831 | Nop 1 | |||
1.5 | 411 | estExt_fgenesh1_pg.C_2690063 | U4/U6-90K/SAP90 | Prp3p | ppSAP90-1 | 269 | f | 583553 | 585615 | ||||
1.5 | 756 | e_gw1.29.46.1 | U4/U6-60K/SAP60 | Prp4p | ppSAP60 | 29 | r | 1575117 | 1577898 | WD-40 7;SFM 1;WD40 | |||
1.6 | 399 | estExt_fgenesh2_pg.C_990065 | Tri-110KD | SAD1 | ppTri110 | 99 | f | 1249896 | 1256253 | SART-1 1 | |||
1.6 | 634 | estExt_fgenesh1_pg.C_870028 | (U4/U6.U5) | Tri-27kD/RY1 | ppTri-27kD/RY1 | 87 | r | 386165 | 388147 | ||||
1.6 | 638 | gw1.7.83.1 | Tri-65_KD | Snu66p | ppTri65a | 7 | r | 230987 | 234731 | UCH 1; ZnF_UBP 1 | |||
1.6 | 753 | estExt_gwp_gw1.C_2010100 | hSnu23/FLJ31121 | Snu23p | ppSnu23 | 201 | f | 457076 | 457687 | ZnF_U1 1 | |||
1.7 | 225 | e_gw1.3.614.1 | U11/U12-25K | (-99_protein) | ppU11/U12-25K-1 | 3 | f | 2895181 | 2896614 | C2H2 1 | |||
1.7 | 225 | e_gw1.278.27.1 | U11/U12-25K | (-99_protein) | ppU11/U12-25K-2 | 278 | f | 297573 | 299014 | C2H2 1 | |||
1.7 | 225 | estExt_Genewise1.C_1090004 | U11/U12-25K | (-99_protein) | ppU11/U12-25K-3 | 109 | f | 339126 | 340449 | C2H2 1 | |||
1.7 | 346 | e_gw1.116.32.1 | U11/U12-65K | ppU11/U12-65K | 116 | r | 422145 | 426259 | RRM 2;PHOSPHOPANTET | ||||
1.7 | 982 | fgenesh1_pg.scaffold_70000045 | U11/U12-35K | ppU11/U12-35kD | 70 | r | 604891 | 608378 | RRM 1 | ||||
1.7 | 1101 | e_gw1.43.74.1 | U11/U12-31K | (MADP1) | ppU11/U12-31K | 43 | r | 1672187 | 1673946 | RRM 1; CCHC 1 |
2. Splicing factors
Group |
CIWOG |
Gene |
hHomologs |
SeHomologs |
Gene Name |
Chr |
str |
from |
to |
Txn |
Domains |
Transcripts |
|
2.1 | 49 | estExt_gwp_gw1.C_2150084 | U2AF35 | ppU2AF35/AUS-1 | 215 | r | 564606 | 566014 | RRM 1; CCHC 2; | ||||
2.1 | 49 | gw1.15.161.1 | U2AF35 | ppU2AF35/AUS-2 | 15 | r | 105309 | 106599 | RRM 1; CCHC 2; | ||||
2.1 | 55 | e_gw1.58.41.1 | U2AF65 | ppU2AF65a/AULb | 270 | f | 300774 | 307499 | RRM 3; | ||||
2.1 | 55 | e_gw1.79.119.1 | U2AF65 | ppU2AF65a/AULb | 58 | r | 1593546 | 1599364 | RRM 3; | ||||
2.1 | 55 | e_gw1.98.112.1 | U2AF65 | ppU2AF65a/AULb | 79 | f | 457158 | 462571 | RRM 3; | ||||
2.1 | 55 | estExt_gwp_gw1.C_2700027 | U2AF65 | ppU2AF65a/AULb | 98 | r | 755039 | 761402 | RRM 3; | ||||
2.1 | 55 | gw1.88.127.1 | U2AF65 | ppU2AF65a/AULb | 88 | r | 247836 | 253280 | RRM 3; | ||||
2.1 | 72 | e_gw1.81.40.1 | PTB/hnRNP_I | ppPTB2a | 81 | r | 1038130 | 1043282 | RRM 2 | ||||
2.1 | 72 | gw1.326.8.1 | PTB/hnRNP_I | ppPTB2b | 326 | r | 6755 | 11733 | RRM 2 | ||||
2.1 | 169 | e_gw1.48.34.1 | PTB/hnRNP_I | ppPTB1-1 | 48 | f | 1130882 | 1135269 | RRM 4 | ||||
2.1 | 169 | estExt_Genewise1.C_360029 | PTB/hnRNP_I | ppPTB1-2 | 36 | f | 221418 | 225624 | RRM 4 | ||||
2.1 | 398 | estExt_gwp_gw1.C_870043 | SF1/BBP | ppSF1/BBP-1 | 87 | r | 795948 | 798464 | RRM 1; CCHC 2; KH | ||||
2.1 | 398 | estExt_gwp_gw1.C_1380136 | SF1/BBP | ppSF1/BBP-2 | 138 | f | 917195 | 919699 | RRM 1; CCHC 2; KH | ||||
2.1 | 409 | e_gw1.126.58.1 | U2AF65 | ppAUL2 | 126 | f | 1210112 | 1212702 | RRM 1 | ||||
2.1 | 481 | estExt_fgenesh1_pm.C_140014 | CBP80 | Cbc2p | ppCBP80-1 | 14 | f | 819495 | 822140 | MIF4G 1; ARM 3 | |||
2.1 | 481 | estExt_Genewise1.C_410020 | CBP80 | Cbc2p | ppCBP80-2 | 41 | f | 124451 | 127075 | MIF4G 1; ARM 3 | |||
2.1 | 553 | e_gw1.333.45.1 | U2AF35_related_prote | ppUrp | 333 | r | 161452 | 163391 | RRM 1; CCCH 2 | ||||
2.2 | 25 | e_gw1.7.233.1 | SF2/ASF | ppSRp30-1 | 7 | r | 37344 | 39382 | RRM 2 | ||||
2.2 | 25 | e_gw1.173.63.1 | SF2/ASF | ppSRp30-2 | 173 | f | 96833 | 99067 | RRM 2 | ||||
2.2 | 25 | estExt_Genewise1.C_280136 | SF2/ASF | ppSRp30-3 | 28 | f | 1041898 | 1044004 | RRM 2 | ||||
2.2 | 31 | e_gw1.207.127.1 | 9G8 | ppRSZp22-1 | 207 | r | 660710 | 662592 | RRM 1; CCHC 1 | ||||
2.2 | 31 | e_gw1.332.33.1 | 9G8 | ppRSZp22-2 | 332 | r | 113811 | 115934 | RRM 1; CCHC 1 | ||||
2.2 | 61 | 122960|e_gw1.42.218.1 | SC35 | ppSC35-1 | RRM 1; | ||||||||
2.2 | 61 | 172957|estExt_fgenesh1_pg.C_3970019 | SC35 | ppSC35-2 | RRM 1; | ||||||||
2.2 | 151 | estExt_fgenesh1_pm.C_2700006 | TASR-2 | - | ppSCL30a-1 | 270 | r | 377098 | 379191 | RRM 1 | |||
2.2 | 151 | e_gw1.183.81.1 | TASR-2 | ppSCL30a-2 | 183 | r | 326969 | 330456 | RRM 1 | ||||
2.2 | 204 | estExt_fgenesh1_pg.C_1440043 | Plant_Novel_SR_prote | ppRSp40 | 144 | f | 725791 | 728662 | RRM 2 | ||||
2.3 | 255 | estExt_gwp_gw1.C_1960080 | SR140 | ppSR140-1a | 196 | f | 705282 | 712687 | Surp 1;RRM 1;RPR 1 | ||||
2.3 | 255 | estExt_fgenesh2_pg.C_1370031 | SR140 | ppSR140-1b | 137 | r | 433522 | 441080 | Surp 1;RRM 1;RPR 1 | ||||
2.3 | 549 | e_gw1.51.85.1 | SPF30 | ppSPF30-1 | 51 | f | 1514814 | 1517436 | Tudor 1 | ||||
2.3 | 549 | e_gw1.79.70.1 | SPF30 | ppSPF30-2 | 79 | f | 580145 | 582812 | Tudor 1 | ||||
2.3 | 549 | estExt_fgenesh1_pg.C_590212 | SPF30 | ppSPF30-3 | 59 | f | 1891011 | 1893581 | Tudor 1 | ||||
2.3 | 647 | estExt_fgenesh1_pg.C_2810007 | SPF45 | ppSPF45 | 281 | f | 26632 | 28259 | DIII/G-patch domain | ||||
2.4 | 1 | estExt_fgenesh1_pg.C_20112 | HSP73/HSPA8 | PpHSP73-1 | 2 | r | 1082753 | 1085179 | Hsp70 1; | ||||
2.4 | 1 | estExt_Genewise1.C_390053 | HSP73/HSPA8 | PpHSP73-2 | 39 | r | 465010 | 467220 | Hsp70 1; | ||||
2.4 | 1 | estExt_Genewise1.C_1810001 | HSP73/HSPA8 | PpHSP73-3 | 181 | f | 24602 | 26590 | Hsp70 1; | ||||
2.4 | 1 | estExt_Genewise1.C_3510021 | HSP73/HSPA8 | PpHSP73-4 | 351 | f | 142870 | 145202 | Hsp70 1; | ||||
2.4 | 1 | estExt_Genewise1.C_5260001 | HSP73/HSPA8 | PpHSP73-5 | 526 | r | 2066 | 4440 | Hsp70 1; | ||||
2.4 | 1 | fgenesh2_pg.scaffold_97000105 | HSP73/HSPA8 | PpHSP73-6 | 97 | f | 1326347 | 1328786 | Hsp70 1; | ||||
2.4 | 1 | fgenesh1_pm.scaffold_91000017 | HSP73/HSPA8 | PpHSP73-7 | 91 | f | 688564 | 690522 | Hsp70 1; | ||||
2.4 | 1 | fgenesh1_pg.scaffold_288000014 | HSP73/HSPA8 | PpHSP73-8 | 288 | f | 209151 | 211139 | Hsp70 1; | ||||
2.4 | 1 | fgenesh1_pg.scaffold_298000015 | HSP73/HSPA8 | PpHSP73-9 | 298 | f | 231753 | 233702 | Hsp70 1; | ||||
2.4 | 134 | estExt_fgenesh1_pm.C_1390014 | G10 | Cwc14p | ppG10-1 | 139 | f | 737986 | 739245 | G10 1; | |||
2.4 | 134 | estExt_gwp_gw1.C_220243 | G10 | Cwc14p | ppG10-2 | 22 | f | 1855154 | 1856562 | G10 1; | |||
2.4 | 167 | estExt_fgenesh1_pm.C_740015 | hSyf3/CRN | Clf1/Syf3p | ppCRN1a-1 | 74 | r | 842597 | 846465 | TPR 1; HAT 14; TPR | |||
2.4 | 167 | estExt_fgenesh1_pg.C_50158 | hSyf3/CRN | Clf1/Syf3p | ppCRN1a-2 | 5 | f | 2950295 | 2954125 | TPR 1; HAT 14; TPR | |||
2.4 | 168 | estExt_fgenesh1_pg.C_2490037 | hSyf3/CRN | Clf1/Syf3p | ppCypE1a | 249 | f | 345599 | 346114 | Pro_isomerase 1 | |||
2.4 | 288 | estExt_fgenesh2_pg.C_1390014 | hSyf1 | Syf1p | ppSyf1 | 139 | r | 296968 | 300504 | TPR 1;HAT 10;TPRli | |||
2.4 | 297 | estExt_gwp_gw1.C_840209 | hECM2 | Ecm2p | ppECM2-1a | 84 | r | 1489507 | 1491789 | RRM 1; CCCH 1 | |||
2.4 | 407 | estExt_fgenesh2_kg.C_780006 | SPF27/BCAS2 | ppSPF27 | 78 | r | 212826 | 214998 | BCAS2 1 | ||||
2.4 | 414 | estExt_gwp_gw1.C_640096 | hPrp19 | Prp19p | ppPrp19a-1 | 64 | f | 1590975 | 1596813 | WD-40 7; Ubox 1 | |||
2.4 | 414 | estExt_Genewise1.C_140201 | hPrp19 | Prp19p | ppPrp19a-2 | 14 | r | 1519985 | 1525470 | WD-40 7; Ubox 1 | |||
2.4 | 467 | e_gw1.169.38.1 | PRL1 | Prp46p | ppPRL1-1 | 169 | r | 412481 | 415770 | WD-40 2;WD40like 1 | |||
2.4 | 467 | estExt_fgenesh1_pg.C_4020035 | PRL1 | Prp46p | ppPRL1-2 | 402 | r | 289490 | 294080 | WD-40 2;WD40like 1 | |||
2.4 | 471 | e_gw1.19.97.1 | GCIP_p29 | Syf2 | ppGCIPp29 | 19 | f | 183162 | 185141 | ||||
2.4 | 546 | fgenesh1_pg.scaffold_169000061 | AD-002 | Cwc15p | ppAD-002 | 169 | f | 595530 | 597355 | Cwf_Cwc_15 1 | |||
2.4 | 559 | estExt_Genewise1.C_6410001 | CDC5 | Cef1 | ppCDC5 | 641 | f | 3918 | 8205 | SANT 2 | |||
2.4 | 640 | fgenesh1_pg.scaffold_294000001 | beta_catenin-like_1 | ppCTNNNBL1 | 294 | f | 5153 | 8300 | Armadillo 1; ARM 1 | ||||
2.4 | 642 | estExt_gwp_gw1.C_4750024 | KIAA0560 | ppAquarius | 475 | r | 84819 | 88994 | |||||
2.4 | 645 | estExt_gwp_gw1.C_560076 | SKIP | Prp45p | ppSKIP | 56 | f | 851837 | 853651 | SKIP/SNW 1 | |||
2.4 | 866 | gw1.290.18.1 | MGC23918 | ppMGC23918 | 290 | r | 329021 | 329510 | |||||
2.4 | 983 | estExt_fgenesh1_pm.C_120049 | PPIase-like_1 | ppPPIase-like1 | 12 | r | 2863520 | 2865700 | Pro_isomerase 1 | ||||
2.4 | 1100 | estExt_fgenesh1_pm.C_1580013 | hIsy1 | Isy1p | ppIsy1 | 158 | r | 580883 | 582187 | Lsy1 1 | |||
2.5 | 122 | e_gw1.213.69.1 | hPrp4 | kinase | ppPRP4K-1a | 213 | f | 659148 | 662022 | Pkinase 1;TyrKc 1; | |||
2.5 | 122 | 146901|e_gw1.250.5.1 | hPrp4 | kinase | ppPRP4K-1b | Pkinase 1;TyrKc 1; | |||||||
2.5 | 220 | estExt_gwp_gw1.C_1820056 | TBL1-rp_1 | ppTBL1-rp1 | 182 | f | 809468 | 814771 | WD-40 5; Peptidease | ||||
2.5 | 464 | fgenesh1_pg.scaffold_2000404 | N-CoR1 | ppN-CoR1-1 | 2 | f | 4721694 | 4732222 | SANT 2;Homeodomain_ | ||||
2.5 | 464 | fgenesh1_pg.scaffold_61000017 | N-CoR1 | ppN-CoR1-2 | 61 | r | 145321 | 159194 | SANT 2;Homeodomain_ | ||||
2.5 | 474 | e_gw1.269.82.1 | FBP-21 | ppFBP21 | 269 | r | 91025 | 93195 | C2H2 1 | ||||
2.5 | 543 | e_gw1.91.14.1 | Smc-1 | ppSmc1 | 91 | r | 260241 | 267810 | ATP_GTP_A_BS 1;SMC_ | ||||
2.5 | 868 | e_gw1.245.68.1 | NPW38 | ppNPW38 | 245 | f | 495251 | 499847 | WW 2 | ||||
2.6 | 65 | e_gw1.4.224.1 | ALY | ppALY-1a | 390 | r | 264808 | 267174 | RRM 1; | ||||
2.6 | 65 | e_gw1.77.52.1 | ALY | ppALY-1b | 4 | r | 584076 | 586052 | RRM 1; | ||||
2.6 | 65 | estExt_fgenesh1_pg.C_3900014 | ALY | ppALY-1c | 77 | r | 856758 | 859065 | RRM 1; | ||||
2.6 | 65 | fgenesh1_pm.scaffold_57000010 | ALY | ppALY-1d | 57 | r | 1390892 | 1393092 | RRM 1; | ||||
2.6 | 80 | estExt_gwp_gw1.C_1230109 | UAP56 | ppUAP56-1 | 123 | r | 945417 | 949418 | DEAD 1; Helicase_C | ||||
2.6 | 80 | fgenesh1_pg.scaffold_311000013 | UAP56 | ppUAP56-2 | 311 | r | 165483 | 169303 | DEAD 1; Helicase_C | ||||
2.6 | 342 | estExt_gwp_gw1.C_550077 | Srm160-like | ppSRM102-1 | 55 | r | 825998 | 827430 | PWI 1 | ||||
2.6 | 342 | estExt_gwp_gw1.C_1810080 | Srm160-like | ppSRM102-2 | 181 | f | 821166 | 823230 | PWI 1 | ||||
2.6 | 345 | estExt_fgenesh1_pm.C_350034 | RNPS1 | ppSR45/ppRNPS1-1 | 35 | f | 1512369 | 1516130 | RRM 1 | ||||
2.6 | 345 | estExt_fgenesh1_pg.C_1180104 | RNPS1 | ppSR45/ppRNPS1-2 | 118 | f | 839466 | 843208 | RRM 1 | ||||
2.6 | 345 | fgenesh1_pg.scaffold_157000058 | RNPS1 | ppSR45/ppRNPS1-3 | 157 | r | 694381 | 698212 | RRM 1 | ||||
2.6 | 348 | estExt_fgenesh1_kg.C_630004 | Magoh | ppMagoh-1 | 63 | r | 932277 | 933474 | Mago_nashi 1 | ||||
2.6 | 348 | estExt_gwp_gw1.C_1250022 | Magoh | ooMagoh-2 | 125 | f | 301327 | 302498 | Mago_nashi 1 | ||||
2.6 | 417 | estExt_fgenesh1_pm.C_5190002 | Nuk-34/eIF4A3/DDX48 | ppDDX48/eIF4A3-1a | 519 | r | 88686 | 92001 | DEAD 1; Helicase_C | ||||
2.6 | 417 | fgenesh1_pm.scaffold_275000006 | Nuk-34/eIF4A3/DDX48 | ppDDX48/eIF4A3-1b | 275 | r | 365287 | 368197 | DEAD 1; Helicase_C | ||||
2.6 | 480 | e_gw1.31.212.1 | Y14 | ppY14-1 | 31 | r | 1403612 | 1404960 | RRM 1; RBMB 4 | ||||
2.6 | 480 | e_gw1.136.78.1 | Y14 | ppY14-2 | 136 | f | 705516 | 707029 | RRM 1; RBMB 4 | ||||
2.6 | 650 | e_gw1.313.11.1 | pinin | ppPinin-1 | 313 | f | 53586 | 57717 | Pinin/SDK/memA 1 | ||||
2.6 | 650 | estExt_gwp_gw1.C_360097 | pinin | ppPinin-2 | 36 | f | 1040085 | 1044398 | Pinin/SDK/memA 1 | ||||
2.7 | 415 | estExt_gwp_gw1.C_3420016 | Prp18 | Prp18 | ppPrp18-1 | 342 | r | 245577 | 247397 | Prp18 1; SFM 1 | |||
2.7 | 416 | fgenesh1_pg.scaffold_390000001 | Prp18 | Prp18 | ppPrp17-1 | 390 | f | 93283 | 95016 | WD-40 7; | |||
2.7 | 551 | estExt_gwp_gw1.C_200137 | Slu7 | Slu7p | ppSLU7-1a | 20 | r | 1805349 | 1808953 | ||||
2.7 | 747 | e_gw1.39.102.1 | Prp17 | Prp17p | ppPrp17 | 39 | f | 398582 | 400662 | WD-40 6 | |||
2.7 | 1102 | estExt_gwp_gw1.C_1240010 | Prp22 | Prp22 | ppPrp22-3 | 124 | f | 23997 | 25406 | DEAD 1;Helicase_C | |||
2.7 | 1103 | e_gw1.89.8.1 | Prp22 | Prp22 | ppPrp22-2 | 89 | f | 1105669 | 1109669 | DEAD 1;Helicase_C | |||
2.8 | 13 | estExt_fgenesh1_pg.C_3310026 | Prp2 | ppPrp2-1a | 331 | f | 358628 | 365754 | DEAD 1; Helicase_C | ||||
2.8 | 13 | estExt_gwp_gw1.C_180152 | Prp2 | ppPrp2-1a | 18 | f | 2082679 | 2086845 | DEAD 1; Helicase_C | ||||
2.8 | 13 | estExt_gwp_gw1.C_430071 | Prp2 | ppPrp2-1a | 43 | f | 420112 | 428868 | DEAD 1; Helicase_C | ||||
2.8 | 13 | estExt_Genewise1.C_180147 | Prp2 | ppPrp2-1a | 18 | f | 2019778 | 2023944 | DEAD 1; Helicase_C | ||||
2.8 | 13 | estExt_Genewise1.C_4270010 | Prp2 | ptPrp2-1a | 427 | r | 45465 | 49721 | DEAD 1; Helicase_C | ||||
2.8 | 293 | estExt_fgenesh1_pg.C_180039 | SRm300 | ppSRM300like-1 | 18 | f | 288582 | 296204 | RRM 1; Filamin/ABP28 | ||||
2.8 | 293 | fgenesh1_pg.scaffold_8000015 | SRm300 | ppSRM300like-2 | 8 | r | 115341 | 120140 | RRM 1; Filamin/ABP28 | ||||
2.8 | 296 | e_gw1.307.20.1 | Prp5 | ppPrp5-1a | 307 | r | 316428 | 320683 | DEAD 1; Helicase_C | ||||
2.8 | 478 | e_gw1.234.40.1 | hTra-2/SFRS10 | ppTra/SFRS1-1 | 234 | f | 40746 | 42621 | RRM 1 | ||||
2.8 | 478 | gw1.3.275.1 | hTra-2/SFRS10 | ppTra/SFRS1-2 | 3 | r | 1100441 | 1100797 | RRM 1 | ||||
2.8 | 478 | gw1.27.117.1 | hTra-2/SFRS10 | ppTra/SFRS1-3 | 27 | r | 962774 | 963742 | RRM 1 | ||||
2.8 | 478 | gw1.21.172.1 | hTra-2/SFRS10 | ppTra/SFRS1-4 | 21 | r | 1415637 | 1417797 | RRM 1 | ||||
2.8 | 754 | e_gw1.257.4.1 | Prp5 | ppPrp5 | 257 | f | 385636 | 389501 | DEAD 1;Helicase_C | ||||
2.8 | 979 | e_gw1.101.51.1 | hDbr1 | dbr1 | ppDbr1 | 101 | f | 725681 | 727583 | Metallophos 1;DBRI |
3. Splicing regulation
Group |
CIWOG |
Gene |
hHomologs |
SeHomologs |
Gene Name |
Chr |
str |
from |
to |
Txn |
Domains |
Transcripts |
|
3.1 | 135 | gw1.29.50.1 | Kinase | SRPK2 | ppSRPK2a-1 | 29 | r | 2409560 | 2411650 | Pkinase 1; TyrKc 1 | |||
3.1 | 135 | gw1.38.75.1 | Kinase | SRPK2 | ppSRPK2a-2 | 38 | f | 1563384 | 1564784 | Pkinase 1; TyrKc 1 | |||
3.1 | 135 | gw1.248.16.1 | Kinase | SRPK2 | ppSRPK2a-3 | 248 | r | 673494 | 675531 | Pkinase 1; TyrKc 1 | |||
3.1 | 290 | e_gw1.100.30.1 | Kinase | Lammer/CLK_kinase | ppAFC3-1 | 100 | r | 591655 | 595053 | Pkinase 1;TyrKc 1;S | |||
3.1 | 290 | e_gw1.132.89.1 | Kinase | Lammer/CLK_kinase | ppAFC3-2 | 132 | f | 503753 | 507181 | Pkinase 1;TyrKc 1;S | |||
3.1 | 290 | estExt_Genewise1.C_4250007 | Kinase | Lammer/CLK_kinase | ppAFC3-3 | 425 | f | 76976 | 80304 | Pkinase 1;TyrKc 1;S | |||
3.2 | 45 | estExt_fgenesh1_pg.C_1430007 | Glycine-Rich_RBD | ppGRBP1d/GRBP1c/GRBP1e-1 | 143 | r | 54847 | 56176 | RRM 1 | ||||
3.2 | 45 | estExt_Genewise1.C_450174 | Glycine-Rich_RBD | ppGRBP1d/GRBP1c/GRBP1e-2 | 45 | f | 2248437 | 2249710 | RRM 1 | ||||
3.2 | 45 | gw1.118.111.1 | Glycine-Rich_RBD | ppGRBP1d/GRBP1c/GRBP1e-3 | 118 | f | 541819 | 543040 | RRM 1 | ||||
3.2 | 45 | gw1.118.113.1 | Glycine-Rich_RBD | ppGRBP1d/GRBP1c/GRBP1e-4 | 118 | r | 540077 | 541062 | RRM 1 | ||||
3.2 | 109 | gw1.123.70.1 | Glycine-Rich_RBD | ppGRP7/ppGRBP3a-1 | 123 | r | 506271 | 506588 | RRM 1 | ||||
3.2 | 109 | gw1.136.87.1 | Glycine-Rich_RBD | ppGRP7/ppGRBP3a-2 | 136 | f | 456800 | 457060 | RRM 1 | ||||
3.2 | 109 | fgenesh1_pg.scaffold_42000167 | Glycine-Rich_RBD | ppGRP7/ppGRBP3a-3 | 42 | f | 2080023 | 2080511 | RRM 1 | ||||
3.3 | 29 | e_gw1.6.161.1 | hnRNP_A/B | PpRNPA/B-1 | 6 | f | 1470452 | 1471863 | RRM 2 | ||||
3.3 | 29 | e_gw1.13.176.1 | hnRNP_A/B | PpRNPA/B-2 | 13 | r | 1114271 | 1115615 | RRM 2 | ||||
3.3 | 29 | e_gw1.13.177.1 | hnRNP_A/B | PpRNPA/B-3 | 13 | r | 1185977 | 1187321 | RRM 2 | ||||
3.3 | 29 | e_gw1.159.40.1 | hnRNP_A/B | PpRNPA/B-4 | 159 | f | 199838 | 201341 | RRM 2 | ||||
3.3 | 257 | gw1.70.172.1 | hnRNP_A/B | ppUBA2c-1 | 70 | r | 1403463 | 1404360 | RRM 2 | ||||
3.3 | 257 | gw1.188.84.1 | hnRNP_A/B | ppUBA2c-2 | 188 | f | 379310 | 379810 | RRM 2 | ||||
3.4 | 93 | e_gw1.118.143.1 | hnRNP_R/Q | hnRNP-R3/ppPA/B-1 | 118 | r | 304566 | 305955 | RRM 3 | ||||
3.4 | 93 | e_gw1.164.69.1 | hnRNP_R/Q | hnRNP-R3/ppPA/B-2 | 164 | f | 722020 | 723572 | RRM 3 | ||||
3.4 | 93 | e_gw1.327.24.1 | hnRNP_R/Q | hnRNP-R3/ppPA/B-3 | 327 | f | 176051 | 177733 | RRM 3 | ||||
3.4 | 179 | estExt_Genewise1.C_1480019 | hnRNP_R/Q | pp-hnRNP-R1 | 148 | f | 261645 | 264518 | RRM 3 | ||||
3.4 | 183 | estExt_fgenesh1_pm.C_1750001 | CUG-BP | ppCUG-BP1-1 | 175 | f | 54224 | 58619 | RRM 3; HUDSXLRNA 4 | ||||
3.4 | 183 | e_gw1.12.73.1 | CUG-BP | ppCUG-BP1-1 | 12 | f | 1396900 | 1400857 | RRM 3; HUDSXLRNA 4 | ||||
3.4 | 337 | e_gw1.158.95.1 | _ | ppFCA1-1 | 158 | r | 774869 | 778691 | RRM 2; WW 1 | ||||
3.4 | 337 | gw1.47.198.1 | _ | ppFCA1-2 | 47 | r | 1533656 | 1536982 | RRM 2; WW 1 | ||||
3.4 | 350 | e_gw1.26.120.1 | hnRNP_G | pp-hnRNP-G2-1 | 26 | f | 2001055 | 2001738 | RRM 1; CCHC 1 | ||||
3.4 | 350 | e_gw1.128.62.1 | hnRNP_G | pp-hnRNP-G2-2 | 128 | f | 464595 | 465269 | RRM 1; CCHC 1 | ||||
3.4 | 555 | estExt_fgenesh2_pg.C_1480033 | hnRNP_P2 | pp-hnRNP-P | 148 | r | 382821 | 386203 | RRM 1; ZnF_RBZ 2 | ||||
3.4 | 639 | gw1.150.78.1 | hnRNP_E1/E2 | pp-hnRNP-E-1 | 150 | f | 699212 | 701999 | KH 3 | ||||
3.4 | 639 | gw1.51.212.1 | hnRNP_E1/E2 | pp-hnRNP-E-2 | 51 | f | 922906 | 925235 | KH 3 | ||||
3.4 | 746 | e_gw1.462.8.1 | hnRNP_F/hnRNP_H | pp-hnRNP-F/AtRNPH/F_ | 462 | r | 26355 | 27074 | RRM 2 | ||||
3.5 | 107 | estExt_fgenesh1_kg.C_4560001 | hnRNP-like_5 | ppAth1 | 456 | r | 162674 | 164791 | HANP4_PAI-RBP! 1 | ||||
3.5 | 107 | estExt_fgenesh1_pg.C_450162 | hnRNP-like_5 | ppAth2 | 45 | r | 2134602 | 2137105 | HANP4_PAI-RBP! 1 | ||||
3.5 | 107 | estExt_fgenesh2_pg.C_970090 | hnRNP-like_5 | ppAth3 | 97 | f | 1191621 | 1193767 | HANP4_PAI-RBP! 1 | ||||
3.5 | 107 | fgenesh1_pm.scaffold_22000005 | hnRNP-like_5 | ppAth4 | 22 | f | 116531 | 118998 | HANP4_PAI-RBP! 1 | ||||
3.5 | 636 | estExt_Genewise1.C_3910068 | hnRNP-like_3 | ppRBP45d-1 | 391 | f | 323784 | 328551 | RRM 3 | ||||
3.5 | 636 | gw1.219.6.1 | hnRNP-like_3 | ppRBP45d-2 | 219 | f | 754638 | 759678 | RRM 3 | ||||
3.5 | 636 | gw1.339.2.1 | hnRNP-like_3 | ppRBP45d-3 | 339 | r | 44492 | 49529 | RRM 3 |
4. Novel spliceosome proteins
Group |
CIWOG |
Gene |
hHomologs |
SeHomologs |
Gene Name |
Chr |
str |
from |
to |
Txn |
Domains |
Transcripts |
|
4.1 | 148 | estExt_fgenesh1_pm.C_650013 | eIF3 | sub2 | pp-eIF3sub2a-1 | 65 | f | 773628 | 776114 | WD40 4 | |||
4.1 | 148 | estExt_fgenesh1_pg.C_340208 | eIF3 | sub2 | pp-eIF3sub2a-2 | 34 | r | 2016544 | 2019265 | WD40 4 | |||
4.1 | 148 | estExt_gwp_gw1.C_280017 | eIF3 | sub2 | pp-eIF3sub2a-3 | 28 | r | 134507 | 137266 | WD40 4 | |||
4.1 | 206 | e_gw1.80.9.1 | hTHO2 | ppTHO2 | 80 | f | 550645 | 564780 | Tho2 | ||||
4.1 | 254 | estExt_gwp_gw1.C_970072 | KIAA0983 | ppKIAA0983-1 | 97 | f | 748389 | 750729 | Fimp 1 | ||||
4.1 | 291 | estExt_fgenesh1_pm.C_90013 | eIF3_sub6 | pp-eIF3sub6-1 | 9 | f | 896185 | 899978 | |||||
4.1 | 291 | estExt_fgenesh1_pm.C_730006 | eIF3_sub6 | pp-eIF3sub6-2 | 73 | r | 93872 | 96687 | |||||
4.1 | 291 | estExt_gwp_gw1.C_3630017 | eIF3_sub6 | pp-eIF3sub6-3 | 363 | f | 121106 | 124168 | |||||
4.1 | 335 | estExt_Genewise1.C_930098 | C21orf66 | ppC21orf66 | 93 | r | 1240947 | 1244951 | |||||
4.1 | 400 | estExt_gwp_gw1.C_70184 | hHPR1 | ppHPR1 | 7 | r | 1392833 | 1394533 | |||||
4.1 | 483 | estExt_gwp_gw1.C_180167 | HsKin17 | Rts2p | ppKin17-1 | 18 | f | 2399490 | 2401099 | ||||
4.1 | 541 | e_gw1.35.320.1 | CF_I-25kD | ppCFI-25kD-1 | 35 | r | 1386567 | 1388704 | |||||
4.1 | 976 | fgenesh1_pm.scaffold_61000005 | CPSF_160K | ppCPSF-160k | 61 | f | 163091 | 173918 | |||||
4.2 | 32 | estExt_fgenesh1_pm.C_2810008 | PAB1/PAB2 | ppPABP1/ppPAB1-1 | 257 | f | 432088 | 435809 | RRM 4 | ||||
4.2 | 32 | e_gw1.51.213.1 | PAB1/PAB2 | ppPABP1/ppPAB1-2 | 281 | f | 215557 | 219043 | RRM 4 | ||||
4.2 | 32 | estExt_fgenesh1_pg.C_2570045 | PAB1/PAB2 | ppPABP1/ppPAB1-3 | 126 | r | 867910 | 871406 | RRM 4 | ||||
4.2 | 32 | estExt_Genewise1.C_1260120 | PAB1/PAB2 | ppPABP1/ppPAB1-4 | 51 | f | 798945 | 801163 | RRM 4 | ||||
4.3 | 69 | estExt_fgenesh1_pm.C_1380026 | p72 | p72-4/p72-3/p72-5 | 138 | r | 845052 | 848948 | DEAD 1; Helicase_C | ||||
4.3 | 69 | estExt_gwp_gw1.C_420049 | p72 | p72-4/p72-3/p72-5 | 42 | r | 725119 | 729001 | DEAD 1; Helicase_C | ||||
4.3 | 100 | estExt_gwp_gw1.C_590062 | p72 | p72-1 | 59 | f | 333236 | 339104 | DEAD 1; Helicase 1 | ||||
4.3 | 136 | estExt_gwp_gw1.C_580012 | KIAA0052 | ppKIAA0052a-1 | 58 | r | 162370 | 170050 | DEAD 1; DSHCT 1; H | ||||
4.3 | 136 | estExt_gwp_gw1.C_690013 | KIAA0052 | ppKIAA0052a-2 | 69 | f | 124320 | 131904 | DEAD 1; DSHCT 1; H | ||||
4.3 | 339 | e_gw1.135.21.1 | hDbp5 | Dbp5p | ppDbp5-1 | 135 | f | 278904 | 281993 | ||||
4.3 | 339 | e_gw1.492.1.1 | hDbp5 | Dbp5p | ppDbp5-2 | 492 | f | 99770 | 103001 | ||||
4.3 | 462 | estExt_Genewise1.C_2150004 | Abstrakt | (Ded1p) | ppAbstrakt-a | 215 | f | 13858 | 15708 | ||||
4.3 | 654 | estExt_fgenesh1_pm.C_2680003 | DDX35 | ppDDX35 | 268 | f | 32241 | 34295 | |||||
4.4 | 404 | fgenesh1_pg.scaffold_131000018 | KIAA0073 | ppKIA0073 | 131 | r | 128055 | 132685 | |||||
4.4 | 652 | estExt_Genewise1.C_1500031 | PPIase-like_3 | ppPPIL3 | 150 | r | 331819 | 333422 | |||||
4.4 | 745 | estExt_fgenesh1_pm.C_330010 | Cyp-60 | ppCYP-60 | 33 | f | 420757 | 423405 | |||||
4.4 | 751 | e_gw1.170.62.1 | SDCCAG10 | ppSDCCAG10 | 170 | r | 648152 | 651525 | |||||
4.5 | 54 | gw1.11.54.1 | CDCL2_p110 | ppCDCL2p110-1 | 11 | f | 340348 | 341679 | Pkinase_Tyr 1; Pkin | ||||
4.5 | 70 | estExt_fgenesh1_pg.C_2070055 | RNPC2 | ppNPC2a/ppNPC2b | 207 | r | 681387 | 685260 | RRM 2 | ||||
4.5 | 70 | estExt_gwp_gw1.C_3320014 | RNPC2 | ppNPC2a/ppNPC2b | 332 | f | 121216 | 124132 | RRM 2 | ||||
4.5 | 99 | gw1.36.181.1 | IMP3 | ppIMP3/KOC | 36 | r | 561485 | 563794 | KH 4 | ||||
4.5 | 180 | estExt_fgenesh1_pg.C_320174 | RBM5 | ppRBM5-1 | 32 | r | 2191695 | 2198982 | G-patch 1; RRM 2; | ||||
4.5 | 180 | fgenesh1_pm.scaffold_40000018 | RBM5 | ppRBM5-2 | 40 | f | 466837 | 472406 | G-patch 1; RRM 2; | ||||
4.5 | 184 | e_gw1.430.3.1 | PMSCL2 | ppPMSCL2-1 | 430 | r | 188391 | 192329 | 3_5_exonuc 1; HRDC | ||||
4.5 | 207 | e_gw1.58.172.1 | DKFZP586O0120 | ppDKFZP586O0120-1 | 58 | f | 499477 | 499830 | DUF1754 1 | ||||
4.5 | 207 | jgi|Phypa1_1|39455|gw1.59.213.1 | DKFZP586O0120 | ppDKFZP586O0120-2 | DUF1754 1 | ||||||||
4.5 | 261 | estExt_fgenesh1_pg.C_150112 | RACK1 | Asc1p | ppRACK1a-1 | 15 | r | 1302768 | 1303718 | WD40 5 | |||
4.5 | 261 | estExt_Genewise1.C_2590023 | RACK1 | Asc1p | ppRACK1a-2 | 259 | f | 424857 | 425807 | WD40 5 | |||
4.5 | 261 | estExt_Genewise1.C_2760003 | RACK1 | Asc1p | ppRACK1a-3 | 276 | f | 12595 | 13545 | WD40 5 | |||
4.5 | 289 | estExt_fgenesh1_pg.C_2710053 | AcinusL | ppAcinusL-1 | 271 | r | 480875 | 484183 | SAP 1 | ||||
4.5 | 289 | estExt_fgenesh2_pg.C_890063 | AcinusL | ppAcinusL-2 | 89 | f | 869687 | 873173 | SAP 1 | ||||
4.5 | 294 | estExt_gwp_gw1.C_1360127 | hSmu-1/FLJ10805 | ppSmu-1a | 136 | f | 914214 | 919627 | |||||
4.5 | 294 | estExt_Genewise1.C_310051 | hSmu-1/FLJ10805 | ppSmu-1b | 31 | f | 370847 | 376153 | |||||
4.5 | 334 | fgenesh1_pg.scaffold_4000037 | TIP-49 | Rvb1p | ppTIP49 | 4 | r | 600396 | 604200 | ||||
4.5 | 340 | estExt_Genewise1.C_3760042 | UBL5p | Hub1p | ppUBL5a | 376 | f | 285312 | 285533 | ||||
4.5 | 343 | estExt_fgenesh1_pg.C_730012 | KIAA1604 | ppKIAA1604 | 73 | r | 59211 | 61322 | |||||
4.5 | 406 | estExt_Genewise1.C_390200 | CA150 | ppCA150-1 | 39 | f | 1662813 | 1669758 | |||||
4.5 | 406 | fgenesh1_pg.scaffold_2000159 | CA150 | ppCA150-2 | 2 | f | 1558304 | 1565992 | |||||
4.5 | 408 | estExt_fgenesh1_pg.C_2290024 | DGSI_protein | ppDGCR14 | 229 | r | 346646 | 348829 | |||||
4.5 | 465 | e_gw1.2.614.1 | SF4/F23858 | ppSF4 | 2 | f | 907869 | 910543 | |||||
4.5 | 473 | estExt_fgenesh1_pm.C_2200004 | NOSIP | ppNOSIP-1 | 220 | r | 386595 | 388103 | |||||
4.5 | 473 | estExt_gwp_gw1.C_2580008 | NOSIP | ppNOSIP-2 | 258 | f | 100076 | 101280 | |||||
4.5 | 476 | e_gw1.162.15.1 | TFIP11/TIP39 | ppTFIP11/TIP39a-1 | 162 | r | 519978 | 522539 | |||||
4.5 | 476 | estExt_gwp_gw1.C_2920010 | TFIP11/TIP39 | ppTFIP11/TIP39a-2 | 292 | r | 77280 | 79862 | |||||
4.5 | 484 | estExt_fgenesh1_pg.C_2550039 | TIP-48 | ppRuvB/TIP48a-1 | 255 | r | 558789 | 560924 | |||||
4.5 | 484 | fgenesh1_pm.scaffold_402000007 | TIP-48 | ppRuvB/TIP48a-2 | 402 | r | 169250 | 171181 | |||||
4.5 | 552 | fgenesh1_pm.scaffold_299000002 | Ku70 | ppKu70 | 299 | f | 10843 | 16519 | |||||
4.5 | 554 | estExt_gwp_gw1.C_1140075 | ZNF183 | ppZNF183a | 114 | r | 473523 | 475000 | |||||
4.5 | 556 | estExt_fgenesh1_pg.C_140117 | MFAP1 | ppMFAP1a | 14 | r | 1227063 | 1228883 | |||||
4.5 | 633 | fgenesh1_pm.scaffold_427000004 | MGC4238 | ppMORG1 | 427 | r | 73428 | 76066 | |||||
4.5 | 643 | gw1.17.31.1 | PMSCL2 | ppPMSCL2-3 | 17 | r | 2203328 | 2208154 | |||||
4.5 | 644 | estExt_gwp_gw1.C_3000034 | PMSCL2 | ppRED | 300 | r | 336183 | 340430 | |||||
4.5 | 646 | estExt_fgenesh1_pg.C_620092 | FLJ90157/DKFZp434E22 | ppPSP1 | 62 | r | 1311981 | 1315204 | |||||
4.5 | 649 | e_gw1.294.23.1 | FLJ10374 | ppCWF16-1 | 294 | r | 527858 | 529975 | |||||
4.5 | 651 | estExt_gwp_gw1.C_2800025 | Cactin | ppCactin | 280 | f | 251350 | 253236 | |||||
4.5 | 749 | gw1.8.103.1 | FLJ10634 | ppCAJ1/FLJ10634 | 8 | r | 2695315 | 2697010 | |||||
4.5 | 750 | estExt_fgenesh1_pg.C_3090029 | FLJ10206 | ppFLJ10206 | 309 | f | 298414 | 306614 | |||||
4.5 | 871 | fgenesh1_pm.scaffold_74000006 | MGC13125 | Cwc26p | ppMGC13125 | 74 | f | 313690 | 315387 | ||||
4.5 | 977 | estExt_fgenesh1_pg.C_3600017 | SPF31 | ppSPF31/Jiv | 360 | f | 292674 | 293408 |
5. Possible splicing related proteins
Group |
CIWOG |
Gene |
hHomologs |
SeHomologs |
Gene Name |
Chr |
str |
from |
to |
Txn |
Domains |
Transcripts |
|
5.1 | 205 | fgenesh1_pg.scaffold_1052000001 | Splicing_factor_like | ppSFL3-1 | 1052 | f | 14599 | 15481 | KH_1 2 | ||||
5.1 | 205 | estExt_fgenesh1_pg.C_800041 | Splicing_factor_like | ppSFL3-2 | 80 | r | 333788 | 338507 | KH_1 2 | ||||
5.1 | 205 | fgenesh1_pg.scaffold_87000102 | Splicing_factor_like | ppSFL3-3 | 87 | r | 1176885 | 1181389 | KH_1 2 | ||||
5.1 | 224 | e_gw1.41.217.1 | Splicing_factor_like | ppSFL6a-1 | 41 | r | 489446 | 492910 | Pro_isomerase 1 | ||||
5.1 | 224 | e_gw1.279.48.1 | Splicing_factor_like | ppSFL6a-2 | 279 | r | 150335 | 153520 | Pro_isomerase 1 | ||||
5.1 | 547 | estExt_gwp_gw1.C_1010073 | Splicing_factor_like | ppSFL5 | 101 | f | 715729 | 723488 | |||||
5.1 | 641 | e_gw1.28.128.1 | Splicing_factor_like | ppSFL4 | 28 | f | 1298166 | 1301876 | |||||
5.2 | 121 | estExt_fgenesh1_pm.C_220029 | DNA_binding_protein_ | ppDBP1a-1 | 22 | r | 1429859 | 1432633 | NOP5NT 1; NOSIC 1; | ||||
5.2 | 121 | estExt_fgenesh1_pg.C_110141 | DNA_binding_protein_ | ppDBP1a-2 | 11 | f | 1957649 | 1960330 | NOP5NT 1; NOSIC 1; | ||||
5.2 | 333 | estExt_fgenesh1_pg.C_4620015 | RNA_binding_2 | ppRBD2b-1 | 462 | r | 139658 | 141801 | |||||
5.2 | 333 | fgenesh2_pg.scaffold_148000004 | RNA_binding_2 | ppRBD2b-2 | 148 | r | 43432 | 44442 | |||||
5.2 | 338 | fgenesh1_pg.scaffold_458000001 | DNA_binding_protein_ | ppDBP2a-1 | 458 | f | 28362 | 36918 | |||||
5.2 | 338 | estExt_Genewise1.C_2030018 | DNA_binding_protein_ | ppDBP2a-2 | 203 | f | 490994 | 499247 | |||||
5.3 | 258 | e_gw1.50.8.1 | SPT5 | ppSPT5a-1 | 50 | f | 1782082 | 1789596 | KOW 1; Supt5 2 | ||||
5.3 | 258 | e_gw1.144.2.1 | SPT5 | ppSPT5a-2 | 144 | r | 165349 | 173788 | KOW 1; Supt5 2 | ||||
5.3 | 295 | e_gw1.100.7.1 | Elongation_Factor(M) | ppEFMa-1 | 100 | r | 200942 | 208040 | |||||
5.3 | 295 | estExt_Genewise1.C_200056 | Elongation_Factor(M) | ppEFMa-2 | 20 | r | 583685 | 590843 | |||||
5.3 | 759 | fgenesh1_pm.scaffold_352000002 | Elongation_Factor | ppEF1 | 352 | r | 20387 | 23681 |