Database

Species Comparisons

Gene Groups

Novel Splicing-related Proteins

Specific Proteins

Oryza sativa (Os)

1. Small nuclear Ribonucleoprotein (snRNP)

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
1.1	108	LOC_Os05g24970.1	SmD2		osSmD2-1	5	r	14392046	14394726		Sm 1
1.1	108	LOC_Os05g24970.2	SmD2		osSmD2-2	5	r	14392046	14394854		Sm 1
1.1	147	LOC_Os02g37430.1	SmD1	SmD1	osSmD1-a1	2	r	22596458	22599889		Sm 1
1.1	147	LOC_Os04g39444.1	SmD1	SmD1	osSmD1-a2	4	r	23312012	23314226		Sm 1
1.1	181	LOC_Os02g03440.1	SmE	SmE	osSmE-a	2	r	1399279	1401336		Sm 1
1.1	221	LOC_Os01g15310.1	LSM4	LSm4	osLSM4	1	r	8569841	8573555		Sm 1
1.1	336	LOC_Os07g07220.1	SmB	SmB1	osSmB-a	7	f	3573405	3575954		Sm 1
1.1	344	LOC_Os02g01250.1	SmD3	SmD3	osSmD3-b1	2	r	135301	138097		Sm 1
1.1	344	LOC_Os03g13760.1	SmD3	SmD3	osSmD3-b2	3	f	7448720	7451976		Sm 1
1.1	469	LOC_Os03g29740.1	SmG	SmG	osSmG-a	3	f	16940020	16942201		Sm 1
1.1	472	LOC_Os08g08040.1	LSM7	LSm7	osLSM7	8	f	4561431	4564408		Sm 1
1.1	479	LOC_Os08g05850.1	LSM2	LSm2	osLSM2	8	f	3145491	3149141		Sm 1
1.1	539	LOC_Os05g32310.1	LSM5	LSm5	osLSM5/SAD1	5	r	18775817	18778305		Sm 1
1.1	540	LOC_Os11g43620.1	SmF	SmF	osSmF	11	f	25841490	25843568		Sm 1
1.1	545	LOC_Os04g36810.1	LSM1	LSm1	osLSM1b	4	f	22038604	22042099		Sm 1
1.1	548	LOC_Os02g30624.1	LSM6	LSm6	osLSM6a-1	2	r	18225619	18229931		Sm 1
1.1	548	LOC_Os02g30624.2	LSM6	LSm6	osLSM6a-1	2	r	18225256	18229931		Sm 1
1.1	548	LOC_Os04g31950.1	LSM6	LSm6	osLSM6a-2	4	r	18962287	18967624		Sm 1
1.1	550	LOC_Os05g51650.1	LSM8	LSm8	osLSM8	5	f	29560547	29562155		Sm 1
1.1	561	LOC_Os01g64690.1	LSM3	LSm3	osLSM3a	1	r	37526356	37528059		Sm 1
1.2	92	LOC_Os02g39300.1	Luc7		osLuc7a	2	f	23723380	23728528		DUF259 1
1.2	92	LOC_Os03g62640.2	Luc7		osLuc7b	3	r	35439310	35445340		DUF259 1
1.2	92	LOC_Os03g62640.3	Luc7		osLuc7b	3	r	35439307	3544534		DUF259 1
1.2	92	LOC_Os03g62640.4	Luc7		osLuc7b	3	r	35439307	3544534		DUF259 1
1.2	208	LOC_Os03g11200.1	Prp39		osPrp39a	3	r	5759804	5766440		HAT 7; TPR-like 1
1.2	403	LOC_Os10g02630.1	U1-70K	Snp1	osU1-70K	10	r	1006562	1011920		RRM 1
1.2	463	LOC_Os02g16640.1	U1C_Subunit	Yhc1	osU1C	2	r	9505790	9509900		C2H2 1; mrCtermi 3
1.2	475	LOC_Os01g34780.1	FBP11	Prp40	osPrp40a	1	r	19176691	19184701		WW 2; FF 5
1.2	475	LOC_Os01g34780.2	FBP11	Prp40	osPrp40a	1	r	19176692	19184701		WW 2; FF 5
1.2	538	LOC_Os07g27300.1	Related_to_Luc7-like	Luc7	osLuc7-rl	7	r	15867936	15873107		DUF259 1
1.2	538	LOC_Os07g27300.2	Related_to_Luc7-like	Luc7	osLuc7-rl	7	r	15868787	15873107		DUF259 1
1.2	1097	LOC_Os08g29124.1	Prp39		osPrp39b	8	r	17819654	17835422		HAT 4
1.3	170	LOC_Os02g14780.1	SF3a120/SAP114_Subun	Prp21p	osSAP114-1a	2	f	8196894	8199811		SWAP/Surp 2
1.3	170	LOC_Os02g14780.2	SF3a120/SAP114_Subun	Prp21p	osSAP114-1a	2	f	8196894	8200387		SWAP/Surp 2
1.3	203	LOC_Os02g04950.1	SF3b160/SAP155_Subun	Hsh155	osSAP155-1	2	r	2318089	2323335		HEAT 1; ARM 2; SAP
1.3	203	LOC_Os02g05310.1	SF3b160/SAP155_Subun	Hsh155	osSAP155-2	2	f	2545982	2551064		HEAT 1; ARM 2; SAP
1.3	203	LOC_Os02g05310.2	SF3b160/SAP155_Subun	Hsh155	osSAP155-2	2	f	2545982	2551064		HEAT 1; ARM 2; SAP
1.3	203	LOC_Os02g05310.3	SF3b160/SAP155_Subun	Hsh155	osSAP155-2	2	f	2545982	2551238		HEAT 1; ARM 2; SAP
1.3	203	LOC_Os02g05310.4	SF3b160/SAP155_Subun	Hsh155	osSAP155-2	2	f	2545982	2551064		HEAT 1; ARM 2; SAP
1.3	203	LOC_Os02g05410.1	SF3b160/SAP155_Subun	Hsh155	osSAP155-3	2	r	2599189	2604031		HEAT 1; ARM 2; SAP
1.3	203	LOC_Os02g27790.1	SF3b160/SAP155_Subun	Hsh155	osSAP155-4	2	f	16443666	16447615		HEAT 1; ARM 2; SAP
1.3	222	LOC_Os02g58090.1	SF3b150/SAP145_Subun	Cus1p	osSF3b150	2	f	35547983	35553043		PSP 1; DUF382 1
1.3	222	LOC_Os02g58090.2	SF3b150/SAP145_Subun	Cus1p	osSF3b150	2	f	35547983	35550002		PSP 1; DUF382 1
1.3	228	LOC_Os04g56760.1	SF3b_14b/PHP5A	Rds3p	osSF3b_14b/PHP5A-a-1	4	r	33669289	33671446		UPF0123 1
1.3	228	LOC_Os05g30410.1	SF3b_14b/PHP5A	Rds3p	osSF3b_14b/PHP5A-a-2	5	r	17566686	17567018		UPF0123 1
1.3	256	LOC_Os02g04480.1	SF3b120/SAP130_Subun	Rse1p	osSAP130a	2	f	1979693	1983630		CPSF_A 1; WD40-like
1.3	347	LOC_Os03g18720.1	U2B''_Subunit	Msl1p	osU2B''	3	r	10477051	10481542		RRM 2
1.3	347	LOC_Os03g18720.2	U2B''_Subunit	Msl1p	osU2B''	3	r	10477051	10481518		RRM 2
1.3	412	LOC_Os02g13990.1	U2A'_Subunit	Lea1p	osU2A	2	r	7630852	7635234		LRR 4
1.3	460	LOC_Os03g59710.1	p14	Snu17p	osP14-1	3	f	33991678	33992516		RRM 1
1.3	461	LOC_Os03g50850.1	p14	Snu17p	osSAP61	3	r	29032346	29038648		C2H2 1
1.3	461	LOC_Os03g50850.2	p14	Snu17p	osSAP61	3	r	29032346	29038618		C2H2 1
1.3	466	LOC_Os08g34480.1	SF3b_10		osSF3b10a	8	r	21629340	21633614		SF3b10 1
1.3	470	LOC_Os10g31900.1	SF3b53/SAP49_Subunit	Hsh49p	osSAP49a	10	f	16679518	16684010		RRM 2
1.3	758	LOC_Os03g15700.1	SF3a66/SAP62_Subunit	Prp11p	osSAP62	3	r	8659062	8661959		C2H2 1
1.4	44	LOC_Os01g52470.1	116kD_Subunit/elonga	Snu114p	osU5-116-2a	1	r	30142530	30145782		EFG_C 1; GTP_EFTU
1.4	44	LOC_Os01g53900.1	116kD_Subunit/elonga	Snu114p	osU5-116-2b	1	f	30991367	30996138		EFG_C 1; GTP_EFTU
1.4	44	LOC_Os02g32030.1	116kD_Subunit/elonga	Snu114p	osU5-116-2c	2	f	18911065	18916199		EFG_C 1; GTP_EFTU
1.4	44	LOC_Os04g02820.1	116kD_Subunit/elonga	Snu114p	osU5-116-2d	4	f	1089827	1094214		EFG_C 1; GTP_EFTU
1.4	44	LOC_Os04g02820.2	116kD_Subunit/elonga	Snu114p	osU5-116-2d	4	f	1089827	1094214		EFG_C 1; GTP_EFTU
1.4	44	LOC_Os04g02820.3	116kD_Subunit/elonga	Snu114p	osU5-116-2d	4	f	1089827	1094214		EFG_C 1; GTP_EFTU
1.4	75	LOC_Os02g01740.1	200kD_Subunit/Helica	Brr2p	osU5-200-1	2	f	410661	418523		DEAD 1; Helicase_C
1.4	75	LOC_Os03g11470.1	200kD_Subunit/Helica	Brr2p	osU5-200-2	3	r	5918915	5930373		DEAD 1; Helicase_C
1.4	75	LOC_Os03g53220.1	200kD_Subunit/Helica	Brr2p	osU5-200-3	3	r	30515962	30523987		DEAD 1; Helicase_C
1.4	182	LOC_Os05g07050.1	220kD_Subunit	Prp8p	osU5-220/Prp8a-1	5	r	3704156	3714490		Mov34 1
1.4	182	LOC_Os06g07080.1	220kD_Subunit	Prp8p	osU5-220/Prp8a-2	6	r	3362868	3367262		Mov34 1
1.4	259	LOC_Os03g50090.1	100kD_Subunit	Prp28p	osU5-100KD	3	r	28561398	28564373		DEAD 1; Helicase_C
1.4	259	LOC_Os03g50090.2	100kD_Subunit	Prp28p	osU5-100KD	3	r	28561797	28564373		DEAD 1; Helicase_C
1.4	259	LOC_Os03g50090.3	100kD_Subunit	Prp28p	osU5-100KD	3	r	28560051	28564360		DEAD 1; Helicase_C
1.4	259	LOC_Os03g50090.4	100kD_Subunit	Prp28p	osU5-100KD	3	r	28560049	28564360		DEAD 1; Helicase_C
1.4	402	LOC_Os01g15860.1	102KD/Prp6-like	Prp6p	osU5-102KD-1	1	f	8930593	8935683		Ubiquitin 1; TPR 3
1.4	402	LOC_Os10g35550.1	102KD/Prp6-like	Prp6p	osU5-102KD-2	10	r	18938237	18942831		Ubiquitin 1; TPR 3
1.4	405	LOC_Os02g33850.1	116kD_Subunit/elonga	Snu114p	osU5-116-3a	2	r	20173145	20176162		EFG_C 1; GTP_EFTU
1.4	405	LOC_Os03g44780.1	116kD_Subunit/elonga	Snu114p	osU5-116-3b	3	f	25249048	25252404		EFG_C 1; GTP_EFTU
1.4	413	LOC_Os06g40600.1	116kD_Subunit/elonga	Snu114p	osU5-116-1a	6	r	24205618	24211572		EFG_C 1; GTP_EFTU 1
1.4	637	LOC_Os07g10256.1	15kD_Subunit	Dib1p	osU5-15-1	7	r	5507052	5509796		DIMI 1; Thioredoxin
1.4	637	LOC_Os10g34520.1	15kD_Subunit	Dib1p	osU5-15-2	10	f	18340063	18342842		DIMI 1; Thioredoxin
1.4	755	LOC_Os06g44370.1	40kD_Subunit		osU5-40	6	r	26777841	26780802		WD-40 7
1.4	1099	LOC_Os02g40450.1	200kD_Subunit/Helica	Brr2p	osU5-200-3	2	f	24512358	24521364		DEAD 1; Sec63 1; Ru
1.5	223	LOC_Os03g13800.1	U4/U6-15.5K	Snu13p	osTri15.5-1a	3	f	7475176	7477174		Ribosomal_L7Ae 1
1.5	260	LOC_Os04g46890.1	U4/U6-61KD	Prp31	osU5-61/Prp31a-1	4	f	27606661	27611264		Nop 1
1.5	260	LOC_Os04g46890.2	U4/U6-61KD	Prp31	osU5-61/Prp31a-1	4	f	27606661	27611264		Nop 1
1.5	260	LOC_Os04g46890.3	U4/U6-61KD	Prp31	osU5-61/Prp31a-1	4	f	27606661	27611264		Nop 1
1.5	260	LOC_Os07g04850.1	U4/U6-61KD	Prp31	osU5-61/Prp31a-2	7	f	2143151	2150825		Nop 1
1.5	260	LOC_Os07g04850.2	U4/U6-61KD	Prp31	osU5-61/Prp31a-2	7	f	2143164	2150800		Nop 1
1.5	260	LOC_Os07g04850.3	U4/U6-61KD	Prp31	osU5-61/Prp31a-2	7	f	2143161	2150800		Nop 1
1.5	411	LOC_Os09g07500.1	U4/U6-90K/SAP90	Prp3p	osSAP90-1	9	r	3750007	3752649
1.5	411	LOC_Os09g07500.2	U4/U6-90K/SAP90	Prp3p	osSAP90-1	9	r	3750007	3752652
1.5	411	LOC_Os09g07500.3	U4/U6-90K/SAP90	Prp3p	osSAP90-1	9	r	3750007	3753991
1.5	756	LOC_Os03g23909.1	U4/U6-60K/SAP60	Prp4p	osSAP60	3	f	13569721	13576074		WD-40 7;SFM 1;WD40
1.6	399	LOC_Os02g30730.1	Tri-110KD	SAD1	osTri110	2	r	18305661	18311428		SART-1 1
1.6	399	LOC_Os02g30730.2	Tri-110KD	SAD1	osTri110	2	r	18305663	18311428		SART-1 1
1.6	634	LOC_Os02g26349.1	(U4/U6.U5)	Tri-27kD/RY1	osTri-27kD/RY1	2	r	15462135	15471529
1.6	634	LOC_Os02g26349.2	(U4/U6.U5)	Tri-27kD/RY1	osTri-27kD/RY1	2	r	15462135	15471529
1.6	638	LOC_Os09g24250.1	Tri-65_KD	Snu66p	osTri65a	9	r	14393486	14398473		UCH 1; ZnF_UBP 1
1.6	753	LOC_Os03g61640.1	hSnu23/FLJ31121	Snu23p	osSnu23	3	f	34934472	34937525		ZnF_U1 1
1.7	225	LOC_Os04g56770.1	U11/U12-25K	(-99_protein)	osU11/U12-25K	4	f	33671620	33673950		C2H2 1
1.7	346	LOC_Os03g21020.1	U11/U12-65K		osU11/U12-65K	3	r	11923186	11928435		RRM 2;PHOSPHOPANTET
1.7	982	LOC_Os09g33870.1	U11/U12-35K		osU11/U12-35kD	9	f	19996519	19999313		RRM 1
1.7	1101	LOC_Os09g37720.1	U11/U12-31K	(MADP1)	osU11/U12-31K	9	r	21742122	21743113		RRM 1; CCHC 1

2. Splicing factors

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
2.1	49	LOC_Os05g48960.1	U2AF35		osU2AF35/AUS	5	f	28017569	28020318		RRM 1; CCHC 2;
2.1	49	LOC_Os05g48960.2	U2AF35		osU2AF35/AUS	5	f	28017569	28020318		RRM 1; CCHC 2;
2.1	49	LOC_Os05g48960.3	U2AF35		osU2AF35/AUS	5	f	28017569	28020318		RRM 1; CCHC 2;
2.1	49	LOC_Os05g48960.4	U2AF35		osU2AF35/AUS	5	f	28017569	28020318		RRM 1; CCHC 2;
2.1	55	LOC_Os11g41820.1	U2AF65		osU2AF65a/AULb	11	r	24682543	24687296		RRM 3;
2.1	55	LOC_Os11g45590.1	U2AF65		osU2AF65a/AULb	11	f	27119365	27124615		RRM 3;
2.1	55	LOC_Os11g45590.2	U2AF65		osU2AF65a/AULb	11	f	27119365	27124615		RRM 3;
2.1	55	LOC_Os11g45590.3	U2AF65		osU2AF65a/AULb	11	f	27119365	27124615		RRM 3;
2.1	72	LOC_Os01g43170.1	PTB/hnRNP_I		osPTB2a	1	r	24632700	24638232		RRM 2
2.1	72	LOC_Os01g43170.2	PTB/hnRNP_I		osPTB2a	1	r	24632700	24638232		RRM 2
2.1	72	LOC_Os01g43170.3	PTB/hnRNP_I		osPTB2a	1	r	24632721	24638232		RRM 2
2.1	72	LOC_Os08g33830.1	PTB/hnRNP_I		osPTB2b	8	r	21170705	21176488		RRM 2
2.1	72	LOC_Os08g33830.2	PTB/hnRNP_I		osPTB2b	8	r	21170705	21176488		RRM 2
2.1	169	LOC_Os01g64770.1	PTB/hnRNP_I		osPTB1-1	1	f	37579409	37584185		RRM 4
2.1	169	LOC_Os01g64770.2	PTB/hnRNP_I		osPTB1-1	1	f	37579409	37584185		RRM 4
2.1	169	LOC_Os05g36120.1	PTB/hnRNP_I		osPTB1-2	5	r	21352461	21358180		RRM 4
2.1	169	LOC_Os05g36120.2	PTB/hnRNP_I		osPTB1-2	5	r	21352461	21358180		RRM 4
2.1	169	LOC_Os05g36120.3	PTB/hnRNP_I		osPTB1-2	5	r	21352467	21356740		RRM 4
2.1	398	LOC_Os04g31620.1	SF1/BBP		osSF1/BBP	4	f	18761835	18766210		RRM 1; CCHC 2; KH
2.1	409	LOC_Os01g72650.1	U2AF65		osAUL2-1	1	f	42148666	42155808		RRM 1
2.1	409	LOC_Os03g04520.2	U2AF65		osAUL2-2	3	r	2102185	2111148		RRM 1
2.1	409	LOC_Os03g04520.3	U2AF65		osAUL2-2	3	r	2103686	2111148		RRM 1
2.1	409	LOC_Os03g04520.4	U2AF65		osAUL2-2	3	f	2102185	2111148		RRM 1
2.1	481	LOC_Os03g22570.1	CBP80	Cbc2p	mtCBP80	3	f	12974849	12986966		MIF4G 1; ARM 3
2.1	481	LOC_Os03g22570.2	CBP80	Cbc2p	osCBP80	3	f	12974849	12986966		MIF4G 1; ARM 3
2.1	553	LOC_Os02g35150.1	U2AF35_related_prote		osUrp	2	f	21104860	21110616		RRM 1; CCCH 2
2.1	635	LOC_Os02g39890.1	CBP20	Cbc1	osCBP20	2	r	24094209	24097624		RRM 1
2.2	25	LOC_Os03g22380.1	SF2/ASF		osSRp30-1	3	f	12813298	12818086		RRM 2
2.2	25	LOC_Os03g22380.2	SF2/ASF		osSRp30-1	3	f	12813298	12816444		RRM 2
2.2	25	LOC_Os03g22380.3	SF2/ASF		osSRp30-1	3	f	12813298	12816444		RRM 2
2.2	25	LOC_Os05g30140.1	SF2/ASF		osSRp34-2	5	f	17385770	17392938		RRM 2
2.2	25	LOC_Os05g30140.2	SF2/ASF		osSRp34-2	5	f	17385770	17392938		RRM 2
2.2	25	LOC_Os07g47630.1	SF2/ASF		osSRp30-3	7	r	28468080	28473190		RRM 2
2.2	25	LOC_Os07g47630.2	SF2/ASF		osSRp30-3	7	r	28468080	28472907		RRM 2
2.2	25	LOC_Os07g47630.3	SF2/ASF		osSRp30-3	7	r	28468080	28473164		RRM 2
2.2	25	LOC_Os07g47630.4	SF2/ASF		osSRp30-3	7	r	28468080	28473190		RRM 2
2.2	25	LOC_Os07g47630.6	SF2/ASF		osSRp30-3	7	r	28468080	28473190		RRM 2
2.2	25	LOC_Os07g47630.7	SF2/ASF		osSRp30-3	7	r	28468080	28473190		RRM 2
2.2	25	LOC_Os07g47630.8	SF2/ASF		osSRp30-3	7	r	28468080	28473164		RRM 2
2.2	31	LOC_Os02g39720.2	9G8		osRSZp22-1	2	r	23986317	23990524		RRM 1; CCHC 1
2.2	31	LOC_Os02g39720.3	9G8		osRSZp22-1	2	r	23986317	23990524		RRM 1; CCHC 1
2.2	31	LOC_Os02g39720.4	9G8		osRSZp22-1	2	r	23986256	23990524		RRM 1; CCHC 1
2.2	31	LOC_Os02g39720.6	9G8		osRSZp22-1	2	r	23986317	23990490		RRM 1; CCHC 1
2.2	31	LOC_Os06g08840.1	9G8		osRSZp22-2	6	f	4427675	4431310		RRM 1; CCHC 1
2.2	31	LOC_Os06g08840.2	9G8		osRSZp22-2	6	f	4427667	4431337		RRM 1; CCHC 1
2.2	31	LOC_Os06g08840.3	9G8		osRSZp22-2	6	f	4427667	4431315		RRM 1; CCHC 1
2.2	31	LOC_Os06g08840.4	9G8		osRSZp22-2	6	f	4427667	4431336		RRM 1; CCHC 1
2.2	31	LOC_Os06g08840.5	9G8		osRSZp22-2	6	f	4427667	4431337		RRM 1; CCHC 1
2.2	31	LOC_Os06g08840.6	9G8		osRSZp22-2	6	f	4427667	4431337		RRM 1; CCHC 1
2.2	31	LOC_Os06g08840.7	9G8		osRSZp22-2	6	f	4427667	4431337		RRM 1; CCHC 1
2.2	31	LOC_Os06g08840.8	9G8		osRSZp22-2	6	f	4427667	4431337		RRM 1; CCHC 1
2.2	61	LOC_Os07g43050.1	SC35		osSC35-1	7	f	25792526	25796707		RRM 1;
2.2	61	LOC_Os07g43050.2	SC35		osSC35-1	7	f	25792526	25796707		RRM 1;
2.2	61	LOC_Os07g43050.3	SC35		osSC35-1	7	f	25792526	25796707		RRM 1;
2.2	61	LOC_Os08g37960.1	SC35		osSC35-2	8	r	24037435	24040588		RRM 1;
2.2	61	LOC_Os08g37960.2	SC35		osSC35-2	8	r	24037523	24040588		RRM 1;
2.2	61	LOC_Os08g37960.3	SC35		osSC35-2	8	r	24037526	24040588		RRM 1;
2.2	151	LOC_Os03g25770.1	TASR-2		osSCL33-1	3	r	14750052	14753591		RRM 1
2.2	151	LOC_Os03g25770.2	TASR-2		osSCL33-1	3	r	14750052	14753600		RRM 1
2.2	151	LOC_Os07g43950.1	TASR-2		osSCL33-2	7	f	26264500	26267679		RRM 1
2.2	204	LOC_Os02g03040.1	Plant_Novel_SR_prote		osRSp41	2	r	1193366	1197056		RRM 2
2.2	204	LOC_Os02g03040.2	Plant_Novel_SR_prote		osRSp41	2	r	1193388	1197056		RRM 2
2.2	204	LOC_Os02g03040.3	Plant_Novel_SR_prote		osRSp41	2	r	1193366	1197056		RRM 2
2.2	204	LOC_Os02g03040.4	Plant_Novel_SR_prote		osRSp40	2	r	1193366	1197056		RRM 2
2.2	226	LOC_Os04g02870.1	Plant_Novel_SR_prote		osRSp31	4	r	1116074	1120563		RRM 2
2.2	226	LOC_Os04g02870.2	Plant_Novel_SR_prote		osRSp31	4	r	1116159	1120473		RRM 2
2.2	226	LOC_Os04g02870.3	Plant_Novel_SR_prote		osRSp31	4	r	1116159	1120550		RRM 2
2.2	226	LOC_Os04g02870.4	Plant_Novel_SR_prote		osRSp31	4	r	1116159	1120560		RRM 2
2.2	292	LOC_Os02g15310.1	TASR-2		osSCL30-1	2	r	8553856	8558163		RRM 1
2.2	292	LOC_Os02g15310.2	TASR-2		osSCL30-1	2	r	8553856	8558164		RRM 1
2.2	292	LOC_Os02g15310.3	TASR-2		osSCL30-1	2	r	8553856	8558163		RRM 1
2.2	292	LOC_Os02g15310.4	TASR-2		osSCL30-1	2	r	8553856	8558164		RRM 1
2.2	292	LOC_Os12g38430.1	TASR-2		osSCL30-2	12	r	23556090	23559945		RRM 1
2.2	978	LOC_Os03g24890.1	TASR-2		osSCL28-1	3	f	14175086	14179731		RRM 1
2.2	978	LOC_Os03g24890.2	TASR-2		osSCL28-1	3	f	14175086	14178083		RRM 1
2.3	13	LOC_Os03g19960.1	hPrp43	Prp43p	osPrp43	3	f	11236504	11240322		DEAD 1; Helicase_C
2.3	13	LOC_Os03g19960.2	hPrp43	Prp43p	osPrp43	3	f	11236504	11240322		DEAD 1; Helicase_C
2.3	255	LOC_Os02g08360.1	SR140		osSR140-1	2	f	4440181	4448765		Surp 1;RRM 1;RPR 1
2.3	549	LOC_Os08g01840.1	SPF30		osSPF30	8	r	512747	517277		Tudor 1
2.3	647	LOC_Os01g34190.1	SPF45		osSPF45	1	f	18846925	18850770		DIII/G-patch domain
2.4	1	LOC_Os01g62290.1	HSP73/HSPA8		OsHSP73-1	1	f	36038663	36042467		Hsp70 1;
2.4	1	LOC_Os01g62290.2	HSP73/HSPA8		OsHSP73-1	1	f	36038663	36042467		Hsp70 1;
2.4	1	LOC_Os02g02410.1	HSP73/HSPA8		OsHSP73-2	2	r	838717	842672		Hsp70 1;
2.4	1	LOC_Os03g16860.1	HSP73/HSPA8		OsHSP73-3	3	f	9369095	9372019		Hsp70 1;
2.4	1	LOC_Os03g16860.2	HSP73/HSPA8		OsHSP73-3	3	f	9369095	9372018		Hsp70 1;
2.4	1	LOC_Os03g16880.1	HSP73/HSPA8		OsHSP73-4	3	r	9376828	9381528		Hsp70 1;
2.4	1	LOC_Os03g16920.1	HSP73/HSPA8		OsHSP73-5	3	r	9410430	9415018		Hsp70 1;
2.4	1	LOC_Os03g50250.1	HSP73/HSPA8		OsHSP73-6	3	f	28640139	28642623		Hsp70 1;
2.4	1	LOC_Os03g60620.1	HSP73/HSPA8		OsHSP73-7	3	f	34439193	34443814		Hsp70 1;
2.4	1	LOC_Os05g30480.1	HSP73/HSPA8		OsHSP73-8	5	r	17599238	17601247		Hsp70 1;
2.4	1	LOC_Os05g35400.1	HSP73/HSPA8		OsHSP73-9	5	r	20971210	20973482		Hsp70 1;
2.4	1	LOC_Os05g38530.1	HSP73/HSPA8		OsHSP73-10	5	r	22536798	22540022		Hsp70 1;
2.4	1	LOC_Os08g09770.1	HSP73/HSPA8		OsHSP73-11	8	r	5644680	5646796		Hsp70 1;
2.4	1	LOC_Os11g08440.1	HSP73/HSPA8		OsHSP73-12	11	f	4439066	4442368		Hsp70 1;
2.4	1	LOC_Os11g08445.1	HSP73/HSPA8		OsHSP73-13	11	f	4444544	4448126		Hsp70 1;
2.4	1	LOC_Os11g08460.1	HSP73/HSPA8		OsHSP73-14	11	r	4462201	4465255		Hsp70 1;
2.4	1	LOC_Os11g08460.2	HSP73/HSPA8		OsHSP73-14	11	r	4462186	4464216		Hsp70 1;
2.4	1	LOC_Os11g08470.1	HSP73/HSPA8		OsHSP73-15	11	r	4472523	4476556		Hsp70 1;
2.4	1	LOC_Os11g47760.1	HSP73/HSPA8		OsHSP73-16	11	f	28281027	28285329		Hsp70 1;
2.4	1	LOC_Os11g47760.2	HSP73/HSPA8		OsHSP73-16	11	f	28281027	28285329		Hsp70 1;
2.4	1	LOC_Os11g47760.3	HSP73/HSPA8		OsHSP73-16	11	f	28281027	28285329		Hsp70 1;
2.4	1	LOC_Os11g47760.4	HSP73/HSPA8		OsHSP73-16	11	f	28283211	28285329		Hsp70 1;
2.4	1	LOC_Os11g47760.5	HSP73/HSPA8		OsHSP73-16	11	f	28281027	28285329		Hsp70 1;
2.4	1	LOC_Os11g47760.6	HSP73/HSPA8		OsHSP73-16	11	f	28281027	28285329		Hsp70 1;
2.4	134	LOC_Os01g63890.1	G10	Cwc14p	osG10-1	1	r	37068351	37070869		G10 1;
2.4	134	LOC_Os04g55290.1	G10	Cwc14p	osG10-2	4	r	32683002	32686508		G10 1;
2.4	134	LOC_Os04g55290.2	G10	Cwc14p	osG10-2	4	r	32683002	32686508		G10 1;
2.4	134	LOC_Os04g55290.5	G10	Cwc14p	osG10-2	4	r	32683002	32686508		G10 1;
2.4	134	LOC_Os05g37390.1	G10	Cwc14p	osG10-3	5	f	21813379	21815895		G10 1;
2.4	134	LOC_Os05g37390.2	G10	Cwc14p	osG10-3	5	f	21813379	21815897		G10 1;
2.4	167	LOC_Os05g22260.1	hSyf3/CRN	Clf1/Syf3p	osCRN1a-1	5	r	12544047	12549054		TPR 1; HAT 14; TPR
2.4	167	LOC_Os05g22260.2	hSyf3/CRN	Clf1/Syf3p	osCRN1a-1	5	r	12544047	12549054		TPR 1; HAT 14; TPR
2.4	167	LOC_Os06g33250.1	hSyf3/CRN	Clf1/Syf3p	osCRN1a-2	6	f	19356235	19359928		TPR 1; HAT 14; TPR
2.4	168	LOC_Os02g02890.1	hSyf3/CRN	Clf1/Syf3p	osCypE1a	2	f	1116059	1117136		Pro_isomerase 1
2.4	288	LOC_Os01g49270.1	hSyf1	Syf1p	osSyf1-1	1	f	28321617	28323944		TPR 1;HAT 10;TPRli
2.4	288	LOC_Os06g12910.1	hSyf1	Syf1p	osSyf1-2	6	r	7066118	7068523		TPR 1;HAT 10;TPRli
2.4	288	LOC_Os07g44970.1	hSyf1	Syf1p	osSyf1-3	7	r	26818298	26823312		TPR 1;HAT 10;TPRli
2.4	297	LOC_Os06g07350.1	hECM2	Ecm2p	osECM2-1a-1	6	r	3535683	3539239		RRM 1; CCCH 1
2.4	297	LOC_Os07g18050.1	hECM2	Ecm2p	osECM2-1a-2	7	r	10677648	10682117		RRM 1; CCCH 1
2.4	407	LOC_Os01g16010.1	SPF27/BCAS2		osSPF27	1	f	9012002	9015711		BCAS2 1
2.4	407	LOC_Os01g16010.2	SPF27/BCAS2		osSPF27	1	f	9012002	9015711		BCAS2 1
2.4	414	LOC_Os10g32880.1	hPrp19	Prp19p	osPrp19a	10	r	17132649	17138899		WD-40 7; Ubox 1
2.4	467	LOC_Os03g21990.1	PRL1	Prp46p	osPRL1	3	f	12598185	12604518		WD-40 2;WD40like 1
2.4	471	LOC_Os06g49740.1	GCIP_p29	Syf2	osGCIPp29	6	f	30086160	30088574
2.4	546	LOC_Os06g01700.1	AD-002	Cwc15p	osAD-002	6	r	412319	415045		Cwf_Cwc_15 1
2.4	559	LOC_Os04g28090.1	CDC5	Cef1	osCDC5	4	f	16407910	16415223		SANT 2
2.4	640	LOC_Os02g58460.1	beta_catenin-like_1		osCTNNNBL1	2	r	35741361	35745423		Armadillo 1; ARM 1
2.4	642	LOC_Os03g26960.1	KIAA0560		osAquarius	3	f	15409079	15418249
2.4	645	LOC_Os02g52250.1	SKIP	Prp45p	osSKIP	2	r	31989349	31991828		SKIP/SNW 1
2.4	866	LOC_Os06g51420.1	MGC23918		osMGC23918	6	f	31146903	31149547
2.4	983	LOC_Os08g44520.2	PPIase-like_1		osPPIase-like1-1	8	r	27997051	27999634		Pro_isomerase 1
2.4	983	LOC_Os08g44520.3	PPIase-like_1		osPPIase-like1-2	8	r	27997051	27999675		Pro_isomerase 1
2.4	1100	LOC_Os02g39050.1	hIsy1	Isy1p	osIsy1	2	r	23572529	23574978		Lsy1 1
2.5	122	LOC_Os12g44330.1	hPrp4	kinase	osPRP4K-1	12	r	27446516	27452843		Pkinase 1;TyrKc 1;
2.5	122	LOC_Os12g44330.2	hPrp4	kinase	osPRP4K-1	12	r	27447669	27452929		Pkinase 1;TyrKc 1;
2.5	220	LOC_Os07g22220.1	TBL1-rp_1		osTBL1-rp1	7	f	12423067	12439493		WD-40 5; Peptidease
2.5	464	LOC_Os05g03550.1	N-CoR1		osN-CoR1	5	r	1501022	1507823		SANT 2;Homeodomain_
2.5	474	LOC_Os06g11170.1	FBP-21		osFBP21	6	r	5856236	5860127		C2H2 1
2.5	474	LOC_Os06g11170.2	FBP-21		osFBP21	6	r	5856236	5860127		C2H2 1
2.5	868	LOC_Os01g68760.1	NPW38		osNPW38	1	r	39937710	39943845		WW 2
2.6	65	LOC_Os03g17010.1	ALY		osALY-1a	3	r	9448241	9452039		RRM 1;
2.6	65	LOC_Os03g17010.2	ALY		osALY-1a	3	r	9448241	9452039		RRM 1;
2.6	65	LOC_Os03g17010.3	ALY		osALY-1a	3	r	9448241	9452039		RRM 1;
2.6	65	LOC_Os11g01020.1	ALY		osALY-1b	11	f	2948	6498		RRM 1;
2.6	65	LOC_Os11g01020.2	ALY		osALY-1b	11	f	2948	6498		RRM 1;
2.6	65	LOC_Os12g01010.1	ALY		osALY-1c	12	f	1682	4428		RRM 1;
2.6	80	LOC_Os01g36890.1	UAP56		osUAP56-1	1	f	20539784	20546067		DEAD 1; Helicase_C
2.6	80	LOC_Os01g36890.2	UAP56		osUAP56-1	1	f	20539784	20546067		DEAD 1; Helicase_C
2.6	80	LOC_Os01g36920.1	UAP56		osUAP56-2	1	f	20569908	20575176		DEAD 1; Helicase_C
2.6	80	LOC_Os01g36920.2	UAP56		osUAP56-2	1	f	20569908	20575176		DEAD 1; Helicase_C
2.6	227	LOC_Os08g33120.1	ALY		osALY-2a	8	r	20575999	20580783		RRM 1
2.6	227	LOC_Os08g33120.2	ALY		osALY-2a	8	r	20575999	20579513		RRM 1
2.6	227	LOC_Os08g33120.3	ALY		osALY-2a	8	r	20575999	20579513		RRM 1
2.6	227	LOC_Os08g33120.5	ALY		osALY-2a	8	r	20575999	20579513		RRM 1
2.6	342	LOC_Os03g16369.1	Srm160-like		osSRM102	3	r	9028402	9034275		PWI 1
2.6	342	LOC_Os03g16369.2	Srm160-like		osSRM102	3	r	9027709	9034275		PWI 1
2.6	345	LOC_Os01g72890.1	RNPS1		osSR45/osRNPS1	1	f	42274499	42279523		RRM 1
2.6	345	LOC_Os01g72890.2	RNPS1		osSR45/osRNPS1	1	f	42274499	42279523		RRM 1
2.6	348	LOC_Os12g18880.1	Magoh		osMagoh	12	f	10956867	10960042		Mago_nashi 1
2.6	417	LOC_Os01g45190.1	Nuk-34/eIF4A3/DDX48		osDDX48/eIF4A3-1a	1	f	25635906	25639519		DEAD 1; Helicase_C
2.6	417	LOC_Os03g36930.1	Nuk-34/eIF4A3/DDX48		osDDX48/eIF4A3-1b	3	r	20490889	20495422		DEAD 1; Helicase_C
2.6	480	LOC_Os05g04850.1	Y14		osY14	5	f	2331034	2334253		RRM 1; RBMB 4
2.6	650	LOC_Os03g49520.1	pinin		osPinin	3	r	28179255	28183169		Pinin/SDK/memA 1
2.7	13	LOC_Os02g19860.1	Prp22	Prp22	osPrp22	2	f	11668274	11673601		DEAD 1; Helicase_C
2.7	13	LOC_Os06g23530.1	Prp22	Prp22	osPrp22	6	r	13722595	13726111		DEAD 1; Helicase_C
2.7	415	LOC_Os07g38420.1	Prp18	Prp18	osPrp18-1	7	r	23086571	23089928		Prp18 1; SFM 1
2.7	416	LOC_Os03g27970.1	Prp18	Prp18	osPrp17-1	3	f	16064517	16067956		WD-40 7;
2.7	416	LOC_Os03g27970.2	Prp18	Prp18	osPrp17-1	3	f	16064517	16068090		WD-40 7;
2.7	551	LOC_Os08g03390.1	Slu7	Slu7p	osSLU7-1a	8	f	1584128	1588010
2.7	551	LOC_Os08g03390.2	Slu7	Slu7p	osSLU7-1a	8	f	1584128	1587229
2.7	747	LOC_Os02g21490.1	Prp17	Prp17p	osPrp17	2	r	12741599	12746532		WD-40 6
2.7	1102	LOC_Os11g20554.1	Prp22	Prp22	osPrp22-3	11	f	11903086	11919239		DEAD 1;Helicase_C
2.7	1103	LOC_Os06g09280.1	Prp22	Prp22	osPrp22-2	6	f	4658378	4666062		DEAD 1;Helicase_C
2.8	13	LOC_Os05g32370.1	Prp2		osPrp2	5	r	18809801	18813383		DEAD 1; Helicase_C
2.8	13	LOC_Os07g32430.1	Prp2		osPrp2-1a	7	r	19289890	19298101		DEAD 1; Helicase_C
2.8	13	LOC_Os08g24760.1	Prp2		osPrp2	8	r	14978687	14989614		DEAD 1; Helicase_C
2.8	293	LOC_Os01g01150.1	SRm300		osSRM300like	1	f	71775	76699		RRM 1; Filamin/ABP28
2.8	293	LOC_Os01g01150.2	SRm300		osSRM300like	1	f	71775	77702		RRM 1; Filamin/ABP28
2.8	293	LOC_Os01g01150.3	SRm300		osSRM300like	1	f	71775	78938		RRM 1; Filamin/ABP28
2.8	296	LOC_Os08g05810.1	Prp5		osPrp5-1a-1	8	r	3112975	3116299		DEAD 1; Helicase_C
2.8	296	LOC_Os08g06344.1	Prp5		osPrp5-1a-2	8	r	3512831	3517779		DEAD 1; Helicase_C
2.8	296	LOC_Os08g06344.2	Prp5		osPrp5-1a-2	8	r	3512838	3517735		DEAD 1; Helicase_C
2.8	296	LOC_Os08g06344.3	Prp5		osPrp5-1a-2	8	r	3512923	3517735		DEAD 1; Helicase_C
2.8	478	LOC_Os03g15890.1	hTra-2/SFRS10		osTra/SFRS1	3	r	8766456	8769486		RRM 1
2.8	478	LOC_Os03g15890.2	hTra-2/SFRS10		osTra/SFRS1	3	r	8766456	8769474		RRM 1
2.8	754	LOC_Os03g19530.1	Prp5		osPrp5	3	f	10982928	10987117		DEAD 1;Helicase_C
2.8	979	LOC_Os03g51540.1	hDbr1	dbr1	osDbr1	3	f	29473359	29477934		Metallophos 1;DBRI

3. Splicing regulation

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
3.1	71	LOC_Os01g62080.1	Lammer/CLK	kinase	osAFC1/osAFC2	1	r	35922823	35928936		Pkinase 1; TyrKc 1
3.1	71	LOC_Os01g62080.2	Lammer/CLK	kinase	osAFC1/osAFC2	1	r	35922757	35928936		Pkinase 1; TyrKc 1
3.1	71	LOC_Os12g27520.1	Lammer/CLK	kinase	osAFC1/osAFC2	12	r	16193418	16196784		Pkinase 1; TyrKc 1
3.1	135	LOC_Os03g53720.1	Kinase	SRPK2	osSRPK2a	3	f	30796201	30800304		Pkinase 1; TyrKc 1
3.1	135	LOC_Os03g53720.2	Kinase	SRPK2	osSRPK2a	3	f	30796201	30800304		Pkinase 1; TyrKc 1
3.1	209	LOC_Os07g28930.1	Kinase	SRPK1	osSRPK1a-1	7	f	16965940	16968971		Pkinase 1; TyrKc 1
3.1	209	LOC_Os09g37949.1	Kinase	SRPK1	osSRPK1a-2	9	r	21880614	21884141		Pkinase 1; TyrKc 1
3.1	290	LOC_Os01g40840.1	Kinase	Lammer/CLK_kinase	osAFC3	1	f	23089710	23094339		Pkinase 1;TyrKc 1;S
3.2	45	LOC_Os01g68790.1	Glycine-Rich_RBD		osGRBP1d/GRBP1c/GRBP1e-1	1	f	39953486	39955480		RRM 1
3.2	45	LOC_Os01g68790.2	Glycine-Rich_RBD		osGRBP1d/GRBP1c/GRBP1e-1	1	f	39953486	39955480		RRM 1
3.2	45	LOC_Os01g68790.3	Glycine-Rich_RBD		osGRBP1d/GRBP1c/GRBP1e-1	1	f	39953486	39955641		RRM 1
3.2	45	LOC_Os07g41120.1	Glycine-Rich_RBD		osGRBP1d/GRBP1c/GRBP1e-2	7	r	8715810	8725322		RRM 1
3.2	45	LOC_Os10g17454.1	Glycine-Rich_RBD		osGRBP1d/GRBP1c/GRBP1e-3	10	r	8715810	8725381		RRM 1
3.2	45	LOC_Os10g17454.2	Glycine-Rich_RBD		osGRBP1d/GRBP1c/GRBP1e-3	10	r	8715810	8725381		RRM 1
3.2	45	LOC_Os10g17454.3	Glycine-Rich_RBD		osGRBP1d/GRBP1c/GRBP1e-3	10	r	8715810	8725381		RRM 1
3.2	45	LOC_Os12g31800.1	Glycine-Rich_RBD		osGRBP1d/GRBP1c/GRBP1e-4	12	f	19101360	19105214		RRM 1
3.2	109	LOC_Os03g46770.1	Glycine-Rich_RBD		osGRP7/osGRBP3a-1	3	f	26453136	26454373		RRM 1
3.2	109	LOC_Os12g43600.1	Glycine-Rich_RBD		osGRP7/osGRBP3a-2	12	f	27026627	27027603		RRM 1
3.3	29	LOC_Os07g39560.1	hnRNP_A/B		OsRNPA/B-1	7	f	23703161	23707935		RRM 2
3.3	29	LOC_Os07g39560.2	hnRNP_A/B		OsRNPA/B-1	7	f	23703929	23707935		RRM 2
3.3	29	LOC_Os07g39560.3	hnRNP_A/B		OsRNPA/B-1	7	f	23703161	23707935		RRM 2
3.3	29	LOC_Os11g41890.1	hnRNP_A/B		OsRNPA/B-2	11	f	24726853	24731188		RRM 2
3.3	149	LOC_Os01g16090.1	hnRNP_A/B		osUBA2a	1	r	9062968	9065787		RRM 2
3.3	257	LOC_Os01g42820.1	hnRNP_A/B		osUBA2c	1	r	24368485	24371160		RRM 2
3.3	257	LOC_Os01g42820.2	hnRNP_A/B		osUBA2c	1	r	24367680	24371112		RRM 2
3.3	257	LOC_Os01g42820.3	hnRNP_A/B		osUBA2c	1	r	24367680	24371160		RRM 2
3.3	418	LOC_Os10g33230.1	hnRNP_A/B		osRNPA/B_1	10	f	17360036	17365373		RRM 2
3.3	648	LOC_Os02g12850.1	hnRNP_A/B		osRNPA/B_8b	2	r	6784169	6788332		RRM 2
3.3	655	LOC_Os08g23120.1	hnRNP_A/B		osRNP_N1	8	f	13927737	13931996		RRM 2;HUDSXLRNA 2
3.4	93	LOC_Os04g45930.1	hnRNP_R/Q		hnRNP-R3/osPA/B-1	4	f	27015132	27020677		RRM 3
3.4	93	LOC_Os04g45930.2	hnRNP_R/Q		hnRNP-R3/osPA/B-2	4	f	27015132	27020677		RRM 3
3.4	93	LOC_Os04g45930.3	hnRNP_R/Q		hnRNP-R3/osPA/B-3	4	f	27015132	27021843		RRM 3
3.4	120	LOC_Os11g04390.1	hnRNP_R/Q		os-hnRNP-R2a	11	f	1820360	1825094		RRM 3
3.4	120	LOC_Os11g04390.2	hnRNP_R/Q		os-hnRNP-R2a	11	f	1820374	1825187		RRM 3
3.4	120	LOC_Os12g04180.1	hnRNP_R/Q		os-hnRNP-R2b	12	f	1754561	1758698		RRM 3
3.4	120	LOC_Os12g04180.2	hnRNP_R/Q		os-hnRNP-R2b	12	f	1754618	1758698		RRM 3
3.4	120	LOC_Os12g04180.3	hnRNP_R/Q		os-hnRNP-R2b	12	f	1754619	1758698		RRM 3
3.4	120	LOC_Os12g04180.4	hnRNP_R/Q		os-hnRNP-R2b	12	f	1754572	1758698		RRM 3
3.4	179	LOC_Os10g06130.1	hnRNP_R/Q		os-hnRNP-R1a	10	r	3112799	3117851		RRM 3
3.4	179	LOC_Os10g06130.2	hnRNP_R/Q		os-hnRNP-R1a	10	r	3112799	3117851		RRM 3
3.4	179	LOC_Os10g06130.3	hnRNP_R/Q		os-hnRNP-R1a	10	r	3112799	3117851		RRM 3
3.4	179	LOC_Os10g06130.4	hnRNP_R/Q		os-hnRNP-R1a	10	r	3112799	3117851		RRM 3
3.4	179	LOC_Os10g06130.5	hnRNP_R/Q		os-hnRNP-R1a	10	r	3112799	3117851		RRM 3
3.4	179	LOC_Os11g14430.1	hnRNP_R/Q		os-hnRNP-R1b	11	r	8096480	8101158		RRM 3
3.4	179	LOC_Os11g14430.2	hnRNP_R/Q		os-hnRNP-R1b	11	r	8096480	8101158		RRM 3
3.4	183	LOC_Os01g71200.1	CUG-BP		osCUG-BP1-1	1	f	41192307	41197933		RRM 3; HUDSXLRNA 4
3.4	183	LOC_Os05g30980.1	CUG-BP		osCUG-BP1-2	5	f	17934689	17940498		RRM 3; HUDSXLRNA 4
3.4	183	LOC_Os05g30980.2	CUG-BP		osCUG-BP1-2	5	f	17935143	17940498		RRM 3; HUDSXLRNA 4
3.4	337	LOC_Os09g03610.1	_		osFCA1	9	f	1789600	1798611		RRM 2; WW 1
3.4	337	LOC_Os09g03610.2	_		osFCA1	9	f	1789446	1798611		RRM 2; WW 1
3.4	337	LOC_Os09g03610.3	_		osFCA1	9	f	1789608	1798611		RRM 2; WW 1
3.4	337	LOC_Os09g03610.4	_		osFCA1	9	f	1789608	1798611		RRM 2; WW 1
3.4	350	LOC_Os03g61990.1	hnRNP_G		os-hnRNP-G2	3	r	35126977	35130215		RRM 1; CCHC 1
3.4	350	LOC_Os03g61990.2	hnRNP_G		os-hnRNP-G2	3	r	35126977	35130215		RRM 1; CCHC 1
3.4	350	LOC_Os03g61990.3	hnRNP_G		os-hnRNP-G2	3	r	35126982	35130197		RRM 1; CCHC 1
3.4	350	LOC_Os03g61990.4	hnRNP_G		os-hnRNP-G2	3	r	35126982	35130215		RRM 1; CCHC 1
3.4	350	LOC_Os03g61990.5	hnRNP_G		os-hnRNP-G2	3	r	35126977	35130197		RRM 1; CCHC 1
3.4	555	LOC_Os07g19560.1	hnRNP_P2		os-hnRNP-P-1	7	r	11591285	11595871		RRM 1; ZnF_RBZ 2
3.4	555	LOC_Os07g19560.2	hnRNP_P2		os-hnRNP-P-1	7	r	11591285	11595841		RRM 1; ZnF_RBZ 2
3.4	555	LOC_Os09g12800.1	hnRNP_P2		os-hnRNP-P-2	9	r	7346438	7353032		RRM 1; ZnF_RBZ 2
3.4	639	LOC_Os03g42900.1	hnRNP_E1/E2		os-hnRNP-E	3	f	23923751	23932379		KH 3
3.4	639	LOC_Os03g42900.2	hnRNP_E1/E2		os-hnRNP-E	3	f	23923793	23932379		KH 3
3.4	746	LOC_Os11g03890.1	hnRNP_F/hnRNP_H		os-hnRNP-F/AtRNPH/F_1	11	f	1550980	1553325		RRM 2
3.4	746	LOC_Os12g03710.1	hnRNP_F/hnRNP_H		os-hnRNP-F/AtRNPH/F_2	12	f	1496364	1498413		RRM 2
3.4	869	LOC_Os03g47800.1	_		hnRNP_G	3	r	27127218	27131780		RRM 1; CCHC 1
3.5	107	LOC_Os01g52390.1	hnRNP-like_5		osAth1	1	r	30094375	30097752		HANP4_PAI-RBP! 1
3.5	107	LOC_Os05g51180.1	hnRNP-like_5		osAth2	5	f	29293328	29296564		HANP4_PAI-RBP! 1
3.5	137	LOC_Os07g42380.1	hnRNP-like_1		osUBP1b-1	7	f	25356847	25361773		RRM 3
3.5	137	LOC_Os11g40510.1	hnRNP-like_1		osUBP1b-2	11	r	23704511	23709491		RRM 3
3.5	137	LOC_Os11g40510.2	hnRNP-like_1		osUBP1b-3	11	r	23704511	23709491		RRM 3
3.5	146	LOC_Os03g37270.1	hnRNP-like_3		osRBP45a-1	8	r	34393689	34397955		RRM 3
3.5	146	LOC_Os03g37270.2	hnRNP-like_3		osRBP45a-1	3	r	20653453	20659682		RRM 3
3.5	146	LOC_Os08g09100.1	hnRNP-like_3		osRBP45a-2	8	r	5267013	5272174		RRM 3
3.5	410	LOC_Os09g28810.1	hnRNP-like_4		osRBP47c	9	f	17498162	17502055		RRM 3
3.5	636	LOC_Os03g07800.1	hnRNP-like_3		osRBP45d	3	f	3969212	3973528		RRM 3

4. Novel spliceosome proteins

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
4.1	148	LOC_Os05g16660.1	eIF3	sub2	os-eIF3sub2a-1	5	f	9448729	9454428		WD40 4
4.1	148	LOC_Os05g16660.2	eIF3	sub2	os-eIF3sub2a-1	5	f	9448729	9454398		WD40 4
4.1	148	LOC_Os08g21660.1	eIF3	sub2	os-eIF3sub2a-2	8	r	12904545	12911486		WD40 4
4.1	206	LOC_Os01g68810.1	hTHO2		osTHO2	1	r	39959242	39974874		Tho2
4.1	254	LOC_Os02g52820.1	KIAA0983		osKIAA0983-1	2	f	32289451	32289451		Fimp 1
4.1	291	LOC_Os07g07250.1	eIF3_sub6		os-eIF3sub6-1	7	f	3594697	3598708
4.1	291	LOC_Os07g12110.1	eIF3_sub6		os-eIF3sub6-2	7	r	6762485	6766334
4.1	291	LOC_Os07g32040.1	eIF3_sub6		os-eIF3sub6-3	7	f	19052636	19054962
4.1	335	LOC_Os03g63670.1	C21orf66		osC21orf66	3	r	35957730	35961273
4.1	335	LOC_Os03g63670.2	C21orf66		osC21orf66	3	r	35957734	35961273
4.1	400	LOC_Os03g01970.1	hHPR1		osHPR1	3	f	601459	608354
4.1	483	LOC_Os03g37330.1	HsKin17	Rts2p	osKin17-1	3	r	20689194	20691051
4.1	541	LOC_Os04g58640.1	CF_I-25kD		osCFI-25kD-1	4	r	34692692	34696529
4.1	976	LOC_Os04g18010.1	CPSF_160K		osCPSF-160k	4	r	9879475	9906306
4.1	1205	LOC_Os08g30820.1	CF_I-25kD		osCFI-25kD	8	r	19028422	19030594
4.2	32	LOC_Os04g42600.1	PAB1/PAB2		osPABP1/osPAB1-1	4	r	25008886	25016133		RRM 4
4.2	32	LOC_Os04g42600.2	PAB1/PAB2		osPABP1/osPAB1-1	4	r	25009651	25016133		RRM 4
4.2	32	LOC_Os08g22354.1	PAB1/PAB2		osPABP1/osPAB1-2	8	f	13469297	13476757		RRM 4
4.2	32	LOC_Os08g22354.2	PAB1/PAB2		osPABP1/osPAB1-2	8	f	13469297	13476757		RRM 4
4.2	32	LOC_Os09g02700.1	PAB1/PAB2		osPABP1/osPAB1-3	9	r	1211856	1217011		RRM 4
4.2	468	LOC_Os03g17030.1	PAB1/PAB2		osPABP6/osPAB7	3	f	9460077	9464449
4.3	69	LOC_Os01g07740.1	p72		p72-4/p72-3/p72-5	1	r	3712687	3717637		DEAD 1; Helicase_C
4.3	69	LOC_Os01g07740.2	p72		p72-4/p72-3/p72-5	1	r	3712702	3717631		DEAD 1; Helicase_C
4.3	69	LOC_Os01g07740.3	p72		p72-4/p72-3/p72-5	1	r	3712687	3717637		DEAD 1; Helicase_C
4.3	69	LOC_Os01g36860.1	p72		p72-4/p72-3/p72-5	1	f	20521402	20527198		DEAD 1; Helicase_C
4.3	69	LOC_Os01g36860.2	p72		p72-4/p72-3/p72-5	1	f	20522298	20527198		DEAD 1; Helicase_C
4.3	69	LOC_Os11g46240.1	p72		p72-4/p72-3/p72-5	11	f	27526751	27533537		DEAD 1; Helicase_C
4.3	100	LOC_Os01g10050.1	p72		p72-1	1	r	5246149	5250192		DEAD 1; Helicase 1
4.3	100	LOC_Os01g10050.2	p72		p72-1	1	r	5245503	5250192		DEAD 1; Helicase 1
4.3	100	LOC_Os01g68320.1	p72		p72-2	1	r	39687217	39692116		DEAD 1; Helicase 1
4.3	100	LOC_Os01g68320.2	p72		p72-2	1	r	39687218	39692116		DEAD 1; Helicase 1
4.3	100	LOC_Os01g68320.3	p72		p72-2	1	r	39687217	39692116		DEAD 1; Helicase 1
4.3	100	LOC_Os01g68320.4	p72		p72-2	1	r	39687217	39692116		DEAD 1; Helicase 1
4.3	100	LOC_Os01g68320.5	p72		p72-2	1	r	39687217	39692116		DEAD 1; Helicase 1
4.3	136	LOC_Os11g07500.1	KIAA0052		osKIAA0052a-1	11	r	3797366	3804489		DEAD 1; DSHCT 1; H
4.3	136	LOC_Os11g07500.2	KIAA0052		osKIAA0052a-1	11	r	3797366	3804489		DEAD 1; DSHCT 1; H
4.3	136	LOC_Os12g18140.1	KIAA0052		osKIAA0052a-2	12	f	10456373	10463605		DEAD 1; DSHCT 1; H
4.3	339	LOC_Os03g06220.1	hDbp5	Dbp5p	osDbp5	3	f	3114962	3119763
4.3	462	LOC_Os02g05660.1	Abstrakt	(Ded1p)	osAbstrakt-a1	2	r	2766215	2770019
4.3	462	LOC_Os06g48210.1	Abstrakt	(Ded1p)	osAbstrakt-a2	6	f	29162791	29165836
4.3	654	LOC_Os01g11370.1	DDX35		osDDX35	1	f	6111801	6124531
4.4	404	LOC_Os08g44330.1	KIAA0073		osKIA0073	8	f	27890523	27896117
4.4	404	LOC_Os08g44330.2	KIAA0073		osKIA0073	8	f	27890630	27896117
4.4	652	LOC_Os06g04000.1	PPIase-like_3		osPPIL3	6	f	1634097	1635030
4.4	745	LOC_Os03g10400.2	Cyp-60		osCYP-60	3	r	5296334	5300353
4.4	751	LOC_Os01g40050.1	SDCCAG10		osSDCCAG10	1	r	22590389	22595120
4.4	751	LOC_Os01g40050.2	SDCCAG10		osSDCCAG10	1	r	22590305	22595120
4.5	54	LOC_Os02g39010.1	CDCL2_p110		osCDCL2p110-1	2	f	23556407	23560284		Pkinase_Tyr 1; Pkin
4.5	54	LOC_Os02g39010.2	CDCL2_p110		osCDCL2p110-1	2	f	23556407	23560284		Pkinase_Tyr 1; Pkin
4.5	54	LOC_Os02g39010.3	CDCL2_p110		osCDCL2p110-1	2	f	23556407	23560284		Pkinase_Tyr 1; Pkin
4.5	54	LOC_Os04g41100.1	CDCL2_p110		osCDCL2p110-1	4	f	24186653	24192932		Pkinase_Tyr 1; Pkin
4.5	54	LOC_Os04g41100.2	CDCL2_p110		osCDCL2p110-1	4	f	24186653	24192932		Pkinase_Tyr 1; Pkin
4.5	54	LOC_Os04g41100.3	CDCL2_p110		osCDCL2p110-1	4	f	24186653	24192932		Pkinase_Tyr 1; Pkin
4.5	54	LOC_Os04g41100.4	CDCL2_p110		osCDCL2p110-1	4	f	24186653	24192932		Pkinase_Tyr 1; Pkin
4.5	54	LOC_Os04g41100.5	CDCL2_p110		osCDCL2p110-1	4	f	24186653	24192932		Pkinase_Tyr 1; Pkin
4.5	54	LOC_Os04g41100.6	CDCL2_p110		osCDCL2p110-1	4	f	24186656	24192932		Pkinase_Tyr 1; Pkin
4.5	70	LOC_Os03g05830.1	RNPC2		osNPC2a/osNPC2b	3	r	2921834	2930549		RRM 2
4.5	70	LOC_Os10g30370.1	RNPC2		osNPC2a/osNPC2b	10	f	15710850	15716786		RRM 2
4.5	70	LOC_Os10g30370.2	RNPC2		osNPC2a/osNPC2b	10	f	15709240	15716786		RRM 2
4.5	99	LOC_Os03g25970.1	IMP3		osIMP3/KOC	3	r	14870674	14875303		KH 4
4.5	99	LOC_Os03g25970.2	IMP3		osIMP3/KOC	3	r	14870674	14875303		KH 4
4.5	180	LOC_Os02g07070.1	RBM5		osRBM5	2	r	3623605	3631548		G-patch 1; RRM 2;
4.5	180	LOC_Os02g07070.2	RBM5		osRBM5	2	r	3623647	3631548		G-patch 1; RRM 2;
4.5	180	LOC_Os02g07070.3	RBM5		osRBM5	2	r	3624825	3631548		G-patch 1; RRM 2;
4.5	184	LOC_Os03g06190.1	PMSCL2		osPMSCL2-1a	3	f	3102830	3108799		3_5_exonuc 1; HRDC
4.5	184	LOC_Os10g30100.1	PMSCL2		osPMSCL2-1b	10	r	15566673	15573135		3_5_exonuc 1; HRDC
4.5	207	LOC_Os02g49530.1	DKFZP586O0120		osDKFZP586O0120	2	r	30270471	30273458		DUF1754 1
4.5	207	LOC_Os02g49530.2	DKFZP586O0120		osDKFZP586O0120	2	r	30270471	30273458		DUF1754 1
4.5	261	LOC_Os01g49290.1	RACK1	Asc1p	osRACK1a	1	f	28329756	28332348		WD40 5
4.5	289	LOC_Os03g26630.1	AcinusL		osAcinusL	3	r	15212860	15217717		SAP 1
4.5	289	LOC_Os03g26630.2	AcinusL		osAcinusL	3	r	15212844	15217717		SAP 1
4.5	294	LOC_Os01g21940.1	hSmu-1/FLJ10805		osSmu-1	1	r	12302144	12308409
4.5	334	LOC_Os01g62040.1	TIP-49	Rvb1p	osTIP49-1	1	f	35901917	35907283
4.5	334	LOC_Os01g62040.2	TIP-49	Rvb1p	osTIP49-1	1	f	35901929	35907283
4.5	334	LOC_Os07g08170.1	TIP-49	Rvb1p	osTIP49-2	7	r	4149688	4155067
4.5	340	LOC_Os02g41820.1	UBL5p	Hub1p	osUBL5a-1	2	r	25141076	25143076
4.5	340	LOC_Os11g04880.1	UBL5p	Hub1p	osUBL5a-2	11	f	2070410	2073046
4.5	343	LOC_Os11g05394.1	KIAA1604		osKIAA1604-1	11	r	2414381	2419267
4.5	343	LOC_Os12g15420.1	KIAA1604		osKIAA1604-1	11	r	2414381	2419269
4.5	406	LOC_Os10g34380.1	CA150		osCA150	10	r	18249679	18260338
4.5	408	LOC_Os06g30710.1	DGSI_protein		osDGCR14	6	f	17811088	17815175
4.5	408	LOC_Os06g30710.2	DGSI_protein		osDGCR14	6	f	17811061	17814617
4.5	408	LOC_Os06g30710.3	DGSI_protein		osDGCR14	6	f	17811061	17815175
4.5	465	LOC_Os09g10930.1	SF4/F23858		osSF4	9	f	6015446	6019410
4.5	465	LOC_Os09g10930.2	SF4/F23858		osSF4	9	f	6015388	6019410
4.5	473	LOC_Os03g17170.1	NOSIP		osNOSIP	3	f	9552121	9554167
4.5	476	LOC_Os12g42140.1	TFIP11/TIP39		osTFIP11/TIP39a	12	r	26090367	26093235
4.5	484	LOC_Os06g08770.1	TIP-48		osRuvB/TIP48a	6	r	4387210	4390754
4.5	544	LOC_Os07g06450.1	PUF60		osCP33/PUF60like	7	r	3121612	3123605
4.5	552	LOC_Os07g08729.1	Ku70		osKu70	7	f	4484207	4495252
4.5	554	LOC_Os02g19804.1	ZNF183		osZNF183a	2	f	11578485	11583587
4.5	556	LOC_Os02g17870.1	MFAP1		osMFAP1a	2	r	10351704	10354070
4.5	633	LOC_Os02g33860.1	MGC4238		osMORG1	2	f	20176345	20180268
4.5	643	LOC_Os07g32890.1	PMSCL2		osPMSCL2-3	7	r	19657126	19667113
4.5	644	LOC_Os11g04950.1	PMSCL2		osRED-1	11	r	2108008	2114673
4.5	644	LOC_Os12g04940.1	PMSCL2		osRED-2	12	r	2127574	2134180
4.5	646	LOC_Os06g30020.1	FLJ90157/DKFZp434E22		osPSP1	6	f	17271732	17279408
4.5	649	LOC_Os01g40610.1	FLJ10374		osCWF16-1	1	f	22930883	22936228
4.5	651	LOC_Os03g58590.1	Cactin		osCactin	3	f	33356856	33363499
4.5	748	LOC_Os01g46710.1	KIAA0853		osKIAA0853	1	r	26600860	26607432
4.5	749	LOC_Os03g04400.1	FLJ10634		osCAJ1/FLJ10634	3	r	2017672	2021076
4.5	750	LOC_Os06g29400.1	FLJ10206		osFLJ10206	6	r	16824603	16835212
4.5	871	LOC_Os08g08080.1	MGC13125	Cwc26p	osMGC13125-1	8	f	4585481	4590242
4.5	871	LOC_Os08g08080.2	MGC13125	Cwc26p	osMGC13125-2	8	f	4585486	4590236
4.5	977	LOC_Os03g15480.1	SPF31		osSPF31/Jiv	3	f	8500302	8504614

5. Possible splicing related proteins

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
5.1	106	LOC_Os06g50890.1	Splicing_factor_like		osSFL	6	f	30778794	30783597		RRM 1
5.1	106	LOC_Os06g50890.2	Splicing_factor_like		osSFL	6	f	30778794	30783597		RRM 1
5.1	106	LOC_Os06g50890.4	Splicing_factor_like		osSFL	6	f	30778794	30783597		RRM 1
5.1	106	LOC_Os06g50890.5	Splicing_factor_like		osSFL	6	f	30778794	30783597		RRM 1
5.1	205	LOC_Os02g13130.1	Splicing_factor_like		osSFL3	2	f	6979511	6985051		KH_1 2
5.1	205	LOC_Os02g13130.2	Splicing_factor_like		osSFL3	2	f	6979511	6985051		KH_1 2
5.1	205	LOC_Os02g13130.3	Splicing_factor_like		osSFL3	2	f	6979511	6985051		KH_1 2
5.1	224	LOC_Os07g08190.1	Splicing_factor_like		osSFL6a	7	f	4174433	4180650		Pro_isomerase 1
5.1	542	LOC_Os09g39780.1	Splicing_factor_like		osSFL6b	9	f	22809426	22810523
5.1	542	LOC_Os09g39780.2	Splicing_factor_like		osSFL6b	9	f	22809423	22810523
5.1	547	LOC_Os07g10390.1	Splicing_factor_like		osSFL5	7	r	5566572	5575615
5.1	641	LOC_Os09g01630.1	Splicing_factor_like		osSFL4	9	r	443788	450698
5.1	641	LOC_Os09g01630.2	Splicing_factor_like		osSFL4	9	r	443788	450698
5.2	121	LOC_Os03g22730.1	DNA_binding_protein_		osDBP1a-1	3	r	13125169	13128611		NOP5NT 1; NOSIC 1;
5.2	121	LOC_Os03g22740.1	DNA_binding_protein_		osDBP1a-2	3	r	13132524	13135898		NOP5NT 1; NOSIC 1;
5.2	333	LOC_Os01g07070.1	RNA_binding_2		osRBD2b	1	f	3321774	3326179
5.2	333	LOC_Os01g07070.2	RNA_binding_2		osRBD2b	1	f	3321774	3326525
5.2	333	LOC_Os01g07070.3	RNA_binding_2		osRBD2b	1	f	3321790	3327256
5.2	333	LOC_Os01g07070.4	RNA_binding_2		osRBD2b	1	f	3321774	3326525
5.2	338	LOC_Os05g51480.1	DNA_binding_protein_		osDBP2a	5	f	29449210	29457409
5.2	338	LOC_Os05g51480.2	DNA_binding_protein_		osDBP2a	5	f	29449210	29457407
5.2	341	LOC_Os07g12490.1	RNA_binding_1		osRBD1b	7	f	7119724	7125463
5.2	401	LOC_Os09g39180.1	Chloroplast	RNA_Binding_31	osCP31a	9	r	22504522	22507074
5.2	1204	LOC_Os04g33810.1	Similar_to_RNA_bindi		osRBD5	4	f	20312202	20313764
5.3	258	LOC_Os02g53230.1	SPT5		osSPT5a-1	2	f	32578698	32585503		KOW 1; Supt5 2
5.3	258	LOC_Os06g10620.1	SPT5		osSPT5a-2	6	r	5522781	5527577		KOW 1; Supt5 2
5.3	295	LOC_Os03g36780.1	Elongation_Factor(M)		osEFMa	3	f	20401513	20416037
5.3	477	LOC_Os01g66300.1	Elongation_Factor		osEF2-1	1	f	38508080	38512573
5.3	477	LOC_Os05g34670.1	Elongation_Factor		osEF2-2	5	r	20506360	20511108
5.3	759	LOC_Os04g45490.1	Elongation_Factor		osEF1	4	r	26732755	26735520
5.4	1096	LOC_Os01g14990.1	Glycine_Rich_Protein		osGRPs-4	1	r	8400311	8401406

Database

10 Plant Species

Species Comparisons

Gene Groups

Novel Splicing-related Proteins

Specific Proteins

Oryza sativa (Os)

1. Small nuclear Ribonucleoprotein (snRNP)

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

2. Splicing factors

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

3. Splicing regulation

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

4. Novel spliceosome proteins

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

5. Possible splicing related proteins

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

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