Database

Species Comparisons

Gene Groups

Novel Splicing-related Proteins

Specific Proteins

Medicago truncatula (Mt)

1. Small nuclear Ribonucleoprotein (snRNP)

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
1.1	108	IMGA\|AC153350_26.2	SmD2		mtSmD2	4	r	38444579	38445226		Sm 1
1.1	147	IMGA\|AC146865_2.2	SmD1	SmD1	mtSmD1-a	1	f	16491407	16495526		Sm 1
1.1	181	IMGA\|AC196855_4.1	SmE	SmE	mtSmE-a1	2	r	24275269	24277290		Sm 1
1.1	181	IMGA\|CU179877_9.1	SmE	SmE	mtSmE-a2	5	f	24799973	24803369		Sm 1
1.1	221	IMGA\|AC141115_6.2	LSM4	LSm4	mtLSM4-1	4	r	32403426	32409029		Sm 1
1.1	221	IMGA\|AC202494_26.1	LSM4	LSm4	mtLSM4-2	4	r	32514384	32519988		Sm 1
1.1	344	IMGA\|AC141113_9.2	SmD3	SmD3	mtSmD3-b	4	r	32876320	32878329		Sm 1
1.1	469	IMGA\|AC150442_9.2	SmG	SmG	mtSmG-a	7	r	28173102	28174960		Sm 1
1.1	472	IMGA\|AC142224_16.2	LSM7	LSm7	mtLSM7	7	f	13050933	13054281		Sm 1
1.1	479	IMGA\|AC139854_38.2	LSM2	LSm2	mtLSM2	7	f	28071328	28075494		Sm 1
1.1	540	IMGA\|AC135801_11.2	SmF	SmF	mtSmF	8	r	32006120	32008491		Sm 1
1.1	545	IMGA\|AC156828_37.2	LSM1	LSm1	mtLSM1b-1	2	f	11825905	11829958		Sm 1
1.1	545	IMGA\|AC174289_29.2	LSM1	LSm1	mtLSM1b-2						Sm 1
1.1	548	IMGA\|AC137667_47.2	LSM6	LSm6	mtLSM6a						Sm 1
1.1	550	IMGA\|AC148406_44.2	LSM8	LSm8	mtLSM8	1	f	19667111	19667739		Sm 1
1.1	561	IMGA\|AC146567_7.2	LSM3	LSm3	mtLSM3a	4	f	24149224	24151230		Sm 1
1.2	92	IMGA\|AC186678_23.2	Luc7		mtLuc7a	7	f	17379774	17385759		DUF259 1
1.2	208	IMGA\|AC147517_33.2	Prp39		mtPrp39a-1	7	r	27005506	27014213		HAT 7; TPR-like 1
1.2	208	IMGA\|AC148607_56.2	Prp39		mtPrp39a-2	7	r	26944705	26953411		HAT 7; TPR-like 1
1.2	403	IMGA\|AC148484_33.2	U1-70K	Snp1	mtU1-70K	8	f	19709444	19714984		RRM 1
1.2	1097	IMGA\|AC144608_48.2	Prp39		mtPrp39b						HAT 4
1.3	170	IMGA\|AC141922_25.2	SF3a120/SAP114_Subun	Prp21p	mtSAP114-1a	4	f	38594174	38599118		SWAP/Surp 2
1.3	222	IMGA\|AC149135_53.2	SF3b150/SAP145_Subun	Cus1p	mtSF3b150	2	r	3899220	3907169		PSP 1; DUF382 1
1.3	256	IMGA\|AC147482_63.2	SF3b120/SAP130_Subun	Rse1p	mtSAP130a-1	6	f	2243676	2246966		CPSF_A 1; WD40-like
1.3	256	IMGA\|AC157349_15.2	SF3b120/SAP130_Subun	Rse1p	mtSAP130a-2	8	f	26960821	26966198		CPSF_A 1; WD40-like
1.3	256	IMGA\|AC182813_38.2	SF3b120/SAP130_Subun	Rse1p	mtSAP130a-3	8	r	26819709	26825090		CPSF_A 1; WD40-like
1.3	347	IMGA\|AC140068_40.2	U2B''_Subunit	Msl1p	mtU2B''a						RRM 2
1.3	347	IMGA\|CR932960_70.2	U2B''_Subunit	Msl1p	mtU2B''b	5	r	25549825	25555799		RRM 2
1.3	460	IMGA\|AC136507_44.2	p14	Snu17p	mtP14-1a	5	f	32243634	32245254		RRM 1
1.3	460	IMGA\|AC146941_26.2	p14	Snu17p	mtP14-1b						RRM 1
1.3	470	IMGA\|AC139882_12.2	SF3b53/SAP49_Subunit	Hsh49p	mtSAP49a-1	3	f	15467244	15472639		RRM 2
1.3	470	IMGA\|AC148818_28.2	SF3b53/SAP49_Subunit	Hsh49p	mtSAP49a-2						RRM 2
1.3	470	IMGA\|CT009535_3.2	SF3b53/SAP49_Subunit	Hsh49p	mtSAP49a-3						RRM 2
1.4	44	IMGA\|AC146817_13.2	116kD_Subunit/elonga	Snu114p	mtU5-116-2a	2	f	16936319	16940336		EFG_C 1; GTP_EFTU
1.4	44	IMGA\|AC146817_14.2	116kD_Subunit/elonga	Snu114p	mtU5-116-2b	2	f	16942022	16945404		EFG_C 1; GTP_EFTU
1.4	44	IMGA\|AC169513_1.2	116kD_Subunit/elonga	Snu114p	mtU5-116-2c	2	f	16829507	16834000		EFG_C 1; GTP_EFTU
1.4	75	IMGA\|AC174366_25.2	200kD_Subunit/Helica	Brr2p	mtU5-200-1	4	f	15954460	15964414		DEAD 1; Helicase_C
1.4	75	IMGA\|AC202497_1.1	200kD_Subunit/Helica	Brr2p	mtU5-200-2	4	f	15954460	15964414		DEAD 1; Helicase_C
1.4	75	IMGA\|AC202497_18.1	200kD_Subunit/Helica	Brr2p	mtU5-200-3	4	f	15954460	15964414		DEAD 1; Helicase_C
1.4	75	IMGA\|AC202497_4.1	200kD_Subunit/Helica	Brr2p	mtU5-200-4	4	f	15954460	15964414		DEAD 1; Helicase_C
1.4	75	IMGA\|AC202497_9.1	200kD_Subunit/Helica	Brr2p	mtU5-200-5	4	f	15954460	15964414		DEAD 1; Helicase_C
1.4	75	IMGA\|CU182773_13.1	200kD_Subunit/Helica	Brr2p	mtU5-200-6	3	f	36485726	36490132		DEAD 1; Helicase_C
1.4	75	IMGA\|CU182773_14.1	200kD_Subunit/Helica	Brr2p	mtU5-200-7	3	f	36491151	36495688		DEAD 1; Helicase_C
1.4	182	IMGA\|AC153129_17.2	220kD_Subunit	Prp8p	mtU5-220/Prp8a-1	8	r	3671825	3679304		Mov34 1
1.4	182	IMGA\|AC159141_26.2	220kD_Subunit	Prp8p	mtU5-220/Prp8a-2						Mov34 1
1.4	182	IMGA\|AC172743_18.2	220kD_Subunit	Prp8p	mtU5-220/Prp8a-3	2	f	24478442	24490775		Mov34 1
1.4	182	IMGA\|AC174466_42.2	220kD_Subunit	Prp8p	mtU5-220/Prp8a-4	2	r	25407883	25410592		Mov34 1
1.4	182	IMGA\|AC202568_1.1	220kD_Subunit	Prp8p	mtU5-220/Prp8a-5	8	r	3712640	3720119		Mov34 1
1.4	259	IMGA\|AC146560_18.2	100kD_Subunit	Prp28p	mtU5-100KD	6	r	430205	434618		DEAD 1; Helicase_C
1.4	402	IMGA\|AC144617_5.2	102KD/Prp6-like	Prp6p	mtU5-102KD	1	r	3429523	3432210		Ubiquitin 1; TPR 3
1.4	405	IMGA\|AC146552_4.2	116kD_Subunit/elonga	Snu114p	mtU5-116-3	8	f	28855641	28858836		EFG_C 1; GTP_EFTU
1.4	413	IMGA\|AC138131_47.2	116kD_Subunit/elonga	Snu114p	mtU5-116-1a	8	r	27337751	27343931		EFG_C 1; GTP_EFTU 1
1.4	755	IMGA\|AC126009_25.2	40kD_Subunit		mtU5-40	7	f	22673342	22677128		WD-40 7
1.5	260	IMGA\|AC150800_1.2	U4/U6-61KD	Prp31	mtU5-61/Prp31a	7	r	7179366	7186025		Nop 1
1.5	411	IMGA\|CT571261_24.2	U4/U6-90K/SAP90	Prp3p	mtSAP90-1	5	r	16094953	16095622
1.5	756	IMGA\|CR936327_16.2	U4/U6-60K/SAP60	Prp4p	mtSAP60	5	r	8845304	8848188		WD-40 7;SFM 1;WD40
1.7	225	IMGA\|AC122726_14.2	U11/U12-25K	(-99_protein)	mtU11/U12-25K-1	8	f	24333355	24334431		C2H2 1
1.7	225	IMGA\|AC125476_1.2	U11/U12-25K	(-99_protein)	mtU11/U12-25K-2	4	r	35091697	35094404		C2H2 1
1.7	225	IMGA\|AC146776_33.2	U11/U12-25K	(-99_protein)	mtU11/U12-25K-3						C2H2 1
1.7	346	IMGA\|AC145753_35.2	U11/U12-65K		mtU11/U12-65K	7	f	21215928	21223211		RRM 2;PHOSPHOPANTET

2. Splicing factors

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
2.1	49	IMGA\|AC140774_4.2	U2AF35		mtU2AF35/AUS-1	1	f	9434602	9437783		RRM 1; CCHC 2;
2.1	49	IMGA\|AC202461_20.1	U2AF35		mtU2AF35/AUS-2	1	f	9538960	9542141		RRM 1; CCHC 2;
2.1	55	IMGA\|AC124956_60.2	U2AF65		mtU2AF65a/AULb	4	f	7399623	7406434		RRM 3;
2.1	55	IMGA\|AC161788_24.2	U2AF65		mtU2AF65a/AULb	4	r	7554566	7561377		RRM 3;
2.1	55	IMGA\|CT010464_26.2	U2AF65		mtU2AF65a/AULb	3	r	309297	315963		RRM 3;
2.1	55	IMGA\|CU234149_15.1	U2AF65		mtU2AF65a/AULb	9	f	11942257	11948923		RRM 3;
2.1	72	IMGA\|AC122724_35.2	PTB/hnRNP_I		mtPTB2a	6	r	1896110	1900580		RRM 2
2.1	72	IMGA\|AC140025_37.2	PTB/hnRNP_I		mtPTB2b	7	r	1979723	1984087		RRM 2
2.1	72	IMGA\|AC148485_50.2	PTB/hnRNP_I		mtPTB2c						RRM 2
2.1	72	IMGA\|CT963079_1.2	PTB/hnRNP_I		mtPTB2d	3	f	26484831	26490357		RRM 2
2.1	169	IMGA\|AC150978_38.2	PTB/hnRNP_I		mtPTB1	1	f	26967108	26973536		RRM 4
2.1	481	IMGA\|AC149131_44.2	CBP80		Cbc2p	7	f	19707763	19721799		MIF4G 1; ARM 3
2.1	553	IMGA\|AC140549_72.2	U2AF35_related_prote		mtUrp-1	2	f	162234	164116		RRM 1; CCCH 2
2.1	553	IMGA\|AC140549_84.2	U2AF35_related_prote		mtUrp-2	2	f	164685	167790		RRM 1; CCCH 2
2.2	25	IMGA\|AC134522_50.2	SF2/ASF		mtSRp30-1	1	r	20734809	20741104		RRM 2
2.2	25	IMGA\|AC144541_44.2	SF2/ASF		mtSRp30-2	7	f	31412933	31415211		RRM 2
2.2	31	IMGA\|CR936368_46.2	9G8		mtRSZp22	3	f	30837735	30840711		RRM 1; CCHC 1
2.2	61	IMGA\|AC144459_24.2	SC35		mtSC35	5	r	23844573	23848157		RRM 1;
2.2	151	IMGA\|AC146760_9.2	TASR-2		mtSCL30a	3	f	22846699	22850069		RRM 1
2.2	204	IMGA\|AC202516_18.1	Plant_Novel_SR_prote		mtRSp40	1	f	27908759	27913322		RRM 2
2.2	292	IMGA\|CR962128_15.2	TASR-2		mtSCL30-1	5	f	28226391	28230385		RRM 1
2.2	752	IMGA\|CT868739_29.2	SF2/ASF		mtSRp34b	3	f	33814027	33819135		RRM 2
2.3	13	IMGA\|AC136449_28.2	hPrp43	Prp43p	mtPrp43	4	f	29345348	29347498		DEAD 1; Helicase_C
2.3	13	IMGA\|AC153352_21.2	hPrp43	Prp43p	mtPrp43	1	r	21551801	21556831		DEAD 1; Helicase_C
2.3	13	IMGA\|CT962504_16.2	hPrp43	Prp43p	mtPrp43	3	f	11873022	11876407		DEAD 1; Helicase_C
2.3	255	IMGA\|AC145470_21.2	SR140		mtSR140-1	8	r	16855907	16866675		Surp 1;RRM 1;RPR 1
2.3	647	IMGA\|AC202467_18.1	SPF45		mtSPF45	4	r	24061271	24066319		DIII/G-patch domain
2.4	1	IMGA\|AC127167_39.2	HSP73/HSPA8		MtHSP73-1	2	r	11353902	11358659		Hsp70 1;
2.4	1	IMGA\|AC127167_41.2	HSP73/HSPA8		MtHSP73-1	2	r	11374474	11380748		Hsp70 1;
2.4	1	IMGA\|AC127167_44.2	HSP73/HSPA8		MtHSP73-1	2	r	11386237	11389715		Hsp70 1;
2.4	1	IMGA\|AC127167_45.2	HSP73/HSPA8		MtHSP73-1	2	r	11390554	11394884		Hsp70 1;
2.4	1	IMGA\|AC137996_18.2	HSP73/HSPA8		MtHSP73-2	7	r	3629881	3632750		Hsp70 1;
2.4	1	IMGA\|AC137996_20.2	HSP73/HSPA8		MtHSP73-2						Hsp70 1;
2.4	1	IMGA\|AC137996_23.2	HSP73/HSPA8		MtHSP73-2						Hsp70 1;
2.4	1	IMGA\|AC137996_25.2	HSP73/HSPA8		MtHSP73-2						Hsp70 1;
2.4	1	IMGA\|AC137996_26.2	HSP73/HSPA8		MtHSP73-2						Hsp70 1;
2.4	1	IMGA\|AC137996_27.2	HSP73/HSPA8		MtHSP73-2						Hsp70 1;
2.4	1	IMGA\|AC137996_40.2	HSP73/HSPA8		MtHSP73-2	7	r	3687392	3689719		Hsp70 1;
2.4	1	IMGA\|AC137996_52.2	HSP73/HSPA8		MtHSP73-2	7	r	3679309	3681471		Hsp70 1;
2.4	1	IMGA\|AC137996_53.2	HSP73/HSPA8		MtHSP73-2	7	r	3674156	3676576		Hsp70 1;
2.4	1	IMGA\|AC137996_65.2	HSP73/HSPA8		MtHSP73-2						Hsp70 1;
2.4	1	IMGA\|AC137996_7.2	HSP73/HSPA8		MtHSP73-2	7	r	3666874	3668928		Hsp70 1;
2.4	1	IMGA\|AC137996_9.2	HSP73/HSPA8		MtHSP73-2	7	f	3656446	3658580		Hsp70 1;
2.4	1	IMGA\|AC138130_37.2	HSP73/HSPA8		MtHSP73-3	2	f	22061399	22063321		Hsp70 1;
2.4	1	IMGA\|AC140546_4.2	HSP73/HSPA8		MtHSP73-4	8	r	33602344	33604840		Hsp70 1;
2.4	1	IMGA\|AC140547_7.2	HSP73/HSPA8		MtHSP73-5	2	r	5883784	5885692		Hsp70 1;
2.4	1	IMGA\|AC145449_27.2	HSP73/HSPA8		MtHSP73-6	4	r	37327677	37329921		Hsp70 1;
2.4	1	IMGA\|AC146757_44.2	HSP73/HSPA8		MtHSP73-7	7	r	5618046	5622059		Hsp70 1;
2.4	1	IMGA\|AC146757_74.2	HSP73/HSPA8		MtHSP73-7	7	f	5532996	5535727		Hsp70 1;
2.4	1	IMGA\|AC149204_23.2	HSP73/HSPA8		MtHSP73-8	7	r	18351023	18353038		Hsp70 1;
2.4	1	IMGA\|AC149204_27.2	HSP73/HSPA8		MtHSP73-8	7	r	18346855	18350006		Hsp70 1;
2.4	1	IMGA\|AC150446_33.2	HSP73/HSPA8		MtHSP73-9						Hsp70 1;
2.4	1	IMGA\|AC150776_9.2	HSP73/HSPA8		MtHSP73-10	7	f	26364256	26367390		Hsp70 1;
2.4	1	IMGA\|AC155888_17.2	HSP73/HSPA8		MtHSP73-11	7	r	2247399	2249736		Hsp70 1;
2.4	1	IMGA\|AC155895_2.2	HSP73/HSPA8		MtHSP73-12	2	f	10361750	10363969		Hsp70 1;
2.4	1	IMGA\|AC155895_3.2	HSP73/HSPA8		MtHSP73-12	2	f	10366216	10369174		Hsp70 1;
2.4	1	IMGA\|AC171167_13.2	HSP73/HSPA8		MtHSP73-13	7	r	3622007	3623949		Hsp70 1;
2.4	1	IMGA\|AC171167_17.2	HSP73/HSPA8		MtHSP73-13	7	r	3565612	3567890		Hsp70 1;
2.4	1	IMGA\|AC171167_18.2	HSP73/HSPA8		MtHSP73-13	7	r	3601673	3603878		Hsp70 1;
2.4	1	IMGA\|AC171167_29.2	HSP73/HSPA8		MtHSP73-13	7	f	3605471	3607943		Hsp70 1;
2.4	1	IMGA\|AC171167_32.2	HSP73/HSPA8		MtHSP73-13	7	r	3590261	3592342		Hsp70 1;
2.4	1	IMGA\|AC171167_34.2	HSP73/HSPA8		MtHSP73-13	7	r	3558015	3560019		Hsp70 1;
2.4	1	IMGA\|AC171167_5.2	HSP73/HSPA8		MtHSP73-13	7	r	3596220	3598506		Hsp70 1;
2.4	1	IMGA\|AC171167_6.2	HSP73/HSPA8		MtHSP73-13	7	r	3610623	3612613		Hsp70 1;
2.4	1	IMGA\|AC171619_12.2	HSP73/HSPA8		MtHSP73-14	4	r	22876099	22878102		Hsp70 1;
2.4	1	IMGA\|AC174467_36.2	HSP73/HSPA8		MtHSP73-15	7	f	3415419	3417337		Hsp70 1;
2.4	1	IMGA\|AC184161_21.2	HSP73/HSPA8		MtHSP73-16						Hsp70 1;
2.4	1	IMGA\|AC188991_10.1	HSP73/HSPA8		MtHSP73-17	2	f	11280694	11286576		Hsp70 1;
2.4	1	IMGA\|AC188991_15.1	HSP73/HSPA8		MtHSP73-17	2	f	11303249	11305316		Hsp70 1;
2.4	1	IMGA\|AC188991_23.1	HSP73/HSPA8		MtHSP73-17	2	f	11335608	11344190		Hsp70 1;
2.4	1	IMGA\|AC188991_7.1	HSP73/HSPA8		MtHSP73-17	2	f	11253727	11259784		Hsp70 1;
2.4	1	IMGA\|AC195561_15.1	HSP73/HSPA8		MtHSP73-18	7	r	4630456	4632590		Hsp70 1;
2.4	1	IMGA\|CT963112_21.2	HSP73/HSPA8		MtHSP73-19	5	r	22288514	22290776		Hsp70 1;
2.4	167	IMGA\|AC166146_3.2	hSyf3/CRN	Clf1/Syf3p	mtCRN1a-1	6	r	17430693	17434434		TPR 1; HAT 14; TPR
2.4	167	IMGA\|AC202353_26.1	hSyf3/CRN	Clf1/Syf3p	mtCRN1a-2	6	r	17489340	17492952		TPR 1; HAT 14; TPR
2.4	167	IMGA\|CU424495_8.1	hSyf3/CRN	Clf1/Syf3p	mtCRN1a-3	5	r	2016621	2022765		TPR 1; HAT 14; TPR
2.4	168	IMGA\|CU024876_25.2	hSyf3/CRN	Clf1/Syf3p	mtCypE1a	3	r	32875590	32876341		Pro_isomerase 1
2.4	297	IMGA\|AC146743_25.2	hECM2	Ecm2p	mtECM2-1a	9	f	2624254	2627959		RRM 1; CCCH 1
2.4	407	IMGA\|AC150743_42.2	SPF27/BCAS2		mtSPF27	4	r	38850077	38857138		BCAS2 1
2.4	414	IMGA\|AC146759_5.2	hPrp19	Prp19p	mtPrp19a	1	f	11587860	11599706		WD-40 7; Ubox 1
2.4	546	IMGA\|AC138087_10.2	AD-002	Cwc15p	mtAD-002-1	8	r	21869577	21873389		Cwf_Cwc_15 1
2.4	546	IMGA\|AC183430_4.2	AD-002	Cwc15p	mtAD-002-2	8	f	21761725	21765546		Cwf_Cwc_15 1
2.4	640	IMGA\|AC137821_32.2	beta_catenin-like_1		mtCTNNNBL1-1	8	f	7102721	7103468		Armadillo 1; ARM 1
2.4	640	IMGA\|AC171395_9.2	beta_catenin-like_1		mtCTNNNBL1-2	8	f	7213078	7213825		Armadillo 1; ARM 1
2.4	642	IMGA\|AC151709_31.2	KIAA0560		mtAquarius	1	r	10020099	10032857
2.4	645	IMGA\|AC192958_8.1	SKIP	Prp45p	mtSKIP	2	r	27557939	27560311		SKIP/SNW 1
2.4	1100	IMGA\|CR931743_20.2	hIsy1	Isy1p	mtIsy1	5	f	35056213	35057659		Lsy1 1
2.5	220	IMGA\|CT573077_44.2	TBL1-rp_1		mtTBL1-rp1	5	r	5740477	5748250		WD-40 5; Peptidease
2.5	464	IMGA\|AC126015_4.2	N-CoR1		mtN-CoR1	1	f	25264606	25273328		SANT 2;Homeodomain_
2.5	474	IMGA\|AC151621_38.2	FBP-21		mtFBP21-1	4	f	28602945	28603961		C2H2 1
2.5	474	IMGA\|AC151621_39.2	FBP-21		mtFBP21-2	4	f	28606167	28607721		C2H2 1
2.6	65	IMGA\|AC202518_8.1	ALY		mtALY-1a/mtALY-1b	4	f	16412240	16416959		RRM 1;
2.6	80	IMGA\|AC145331_38.2	UAP56		mtUAP56-1	1	r	3856149	3864701		DEAD 1; Helicase_C
2.6	80	IMGA\|AC147471_75.2	UAP56		mtUAP56-2						DEAD 1; Helicase_C
2.6	80	IMGA\|AC150787_35.2	UAP56		mtUAP56-3	3	f	20674079	20679838		DEAD 1; Helicase_C
2.6	227	IMGA\|CT963094_22.2	ALY		mtALY-2a	3	f	15269373	15272534		RRM 1
2.6	342	IMGA\|AC202498_22.1	Srm160-like		mtSRM102	4	r	17059995	17065983		PWI 1
2.6	348	IMGA\|CU024868_41.2	Magoh		mtMagoh	3	r	32800964	32802512		Mago_nashi 1
2.6	650	IMGA\|AC157375_13.2	pinin		mtPinin-1	2	f	1191749	1195911		Pinin/SDK/memA 1
2.6	650	IMGA\|AC189276_1.1	pinin		mtPinin-2						Pinin/SDK/memA 1
2.7	13	IMGA\|AC196764_13.1	Prp22	Prp22	mtPrp22	2	f	23797662	23807260		DEAD 1; Helicase_C
2.7	13	IMGA\|AC202344_1.1	Prp22	Prp22	mtPrp22	1	r	28499972	28503245		DEAD 1; Helicase_C
2.7	416	IMGA\|AC158374_19.2	Prp18	Prp18	mtPrp17-1	1	r	16324877	16326365		WD-40 7;
2.8	13	IMGA\|AC146307_21.2	Prp2		mtPrp2	6	f	10334241	10338886		DEAD 1; Helicase_C
2.8	13	IMGA\|CR962133_21.2	Prp2		mtPrp2-1a	5	f	25942987	25944866		DEAD 1; Helicase_C
2.8	296	IMGA\|AC192707_12.1	Prp5		mtPrp5-1a	2	f	826658	831955		DEAD 1; Helicase_C
2.8	754	IMGA\|AC155099_15.2	Prp5		mtPrp5	7	r	29497525	29501958		DEAD 1;Helicase_C

3. Splicing regulation

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
3.1	71	IMGA\|CT573420_35.2	Lammer/CLK	kinase	mtAFC1/mtAFC2	3	f	24738208	24740255		Pkinase 1; TyrKc 1
3.1	135	IMGA\|AC174301_13.2	Kinase	SRPK2	mtSRPK2a	1	f	14915164	14921406		Pkinase 1; TyrKc 1
3.1	209	IMGA\|CR932967_30.2	Kinase	SRPK1	mtSRPK1a-1						Pkinase 1; TyrKc 1
3.1	209	IMGA\|CT033770_36.2	Kinase	SRPK1	mtSRPK1a-2	5	r	9487345	9491240		Pkinase 1; TyrKc 1
3.1	290	IMGA\|AC135413_25.2	Kinase	Lammer/CLK_kinase	mtAFC3-1	3	r	31046798	31050901		Pkinase 1;TyrKc 1;S
3.1	290	IMGA\|CR956430_21.2	Kinase	Lammer/CLK_kinase	mtAFC3-2						Pkinase 1;TyrKc 1;S
3.2	45	IMGA\|AC146705_26.2	Glycine-Rich_RBD		mtGRBP1d/GRBP1c/GRBP1e	3	f	23207650	23209533		RRM 1
3.2	109	IMGA\|AC134242_17.2	Glycine-Rich_RBD		mtGRP7/mtGRBP3a-1	4	r	19466799	19467865		RRM 1
3.2	109	IMGA\|AC134242_43.2	Glycine-Rich_RBD		mtGRP7/mtGRBP3a-2	4	r	19511124	19512181		RRM 1
3.3	29	IMGA\|AC121232_18.2	hnRNP_A/B		MtRNPA/B-1	3	r	12509664	12513934		RRM 2
3.3	29	IMGA\|AC157981_22.2	hnRNP_A/B		MtRNPA/B-2	4	f	38680301	38682192		RRM 2
3.3	29	IMGA\|CR955006_36.2	hnRNP_A/B		MtRNPA/B-3	5	f	36065353	36070155		RRM 2
3.3	149	IMGA\|AC130803_32.2	hnRNP_A/B		mtUBA2a-1						RRM 2
3.3	149	IMGA\|AC149134_50.2	hnRNP_A/B		mtUBA2a-2	7	r	23563374	23568765		RRM 2
3.3	655	IMGA\|CT030180_20.2	hnRNP_A/B		mtRNP_N1	3	f	22195567	22197506		RRM 2;HUDSXLRNA 2
3.4	93	IMGA\|AC149129_30.2	hnRNP_R/Q		hnRNP-R3/mtPA/B-1	7	f	19090202	19095517		RRM 3
3.4	93	IMGA\|AC149546_31.2	hnRNP_R/Q		hnRNP-R3/mtPA/B-2	8	r	17360795	17368014		RRM 3
3.4	93	IMGA\|AC202489_16.1	hnRNP_R/Q		hnRNP-R3/mtPA/B-3						RRM 3
3.4	120	IMGA\|AC139854_19.2	hnRNP_R/Q		mt-hnRNP-R2a	7	r	28114016	28119974		RRM 3
3.4	120	IMGA\|AC157373_30.2	hnRNP_R/Q		mt-hnRNP-R2b	7	f	1636778	1642537		RRM 3
3.4	337	IMGA\|AC135100_25.2	_		mtFCA1-1	8	r	29857777	29868882		RRM 2; WW 1
3.4	337	IMGA\|AC174143_20.2	_		mtFCA1-2	8	f	29672130	29683222		RRM 2; WW 1
3.4	350	IMGA\|AC187356_26.2	hnRNP_G		mt-hnRNP-G2	2	f	1366063	1367727		RRM 1; CCHC 1
3.4	867	IMGA\|AC135465_37.2	_		mtFCA2-1	7	f	29425781	29433309		RRM 2; WW 1
3.4	867	IMGA\|AC155099_33.2	_		mtFCA2-2						RRM 2; WW 1
3.4	980	IMGA\|CT009558_56.2	hnRNP_F/hnRNP_H		mt-hnRNP-H	3	f	13519916	13525388		RRM 2
3.5	137	IMGA\|AC144483_30.2	hnRNP-like_1		mtUBP1b	8	r	31235784	31240580		RRM 3
3.5	146	IMGA\|AC152402_23.2	hnRNP-like_3		mtRBP45a-1	8	f	34279564	34283829		RRM 3
3.5	146	IMGA\|AC202500_12.1	hnRNP-like_3		mtRBP45a-2	8	r	34393689	34397955		RRM 3
3.5	410	IMGA\|CU457783_12.1	hnRNP-like_4		mtRBP47c	3	r	29349911	29353518		RRM 3
3.5	636	IMGA\|AC146330_10.2	hnRNP-like_3		mtRBP45d	2	r	23519252	23524883		RRM 3
3.5	870	IMGA\|AC127168_20.2	hnRNP-like_4		mtRBP47a-1	4	r	28619047	28623498		RRM 3
3.5	870	IMGA\|AC151621_30.2	hnRNP-like_4		mtRBP47a-2						RRM 3

4. Novel spliceosome proteins

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
4.1	148	IMGA\|AC124957_30.2	eIF3	sub2	mt-eIF3sub2a-1						WD40 4
4.1	148	IMGA\|AC133862_22.2	eIF3	sub2	mt-eIF3sub2a-2	2	f	20559791	20564027		WD40 4
4.1	206	IMGA\|AC141922_24.2	hTHO2		mtTHO2-1	4	r	38539321	38545525		Tho2
4.1	206	IMGA\|AC141922_31.2	hTHO2		mtTHO2-2	4	r	38529095	38538211		Tho2
4.1	206	IMGA\|AC142094_1.2	hTHO2		mtTHO2-3						Tho2
4.1	206	IMGA\|AC142094_42.2	hTHO2		mtTHO2-4						Tho2
4.1	254	IMGA\|CU012043_30.2	KIAA0983		mtKIAA0983-1a	3	r	29742056	29743919		Fimp 1
4.1	254	IMGA\|CU012043_7.2	KIAA0983		mtKIAA0983-1b	3	r	29737101	29739645		Fimp 1
4.1	254	IMGA\|CU179697_18.1	KIAA0983		mtKIAA0983-1c						Fimp 1
4.1	483	IMGA\|CU424490_8.1	HsKin17	Rts2p	mtKin17-1	5	f	33542668	33546047
4.2	32	IMGA\|AC136449_16.2	PAB1/PAB2		mtPABP1/mtPAB1-1	4	r	29312110	29317773		RRM 4
4.2	32	IMGA\|AC148486_23.2	PAB1/PAB2		mtPABP1/mtPAB1-2	1	f	6658115	6663331		RRM 4
4.2	468	IMGA\|AC174301_43.2	PAB1/PAB2		mtPABP6/mtPAB7	1	r	14995422	14998974
4.3	69	IMGA\|AC144760_39.2	p72		p72-4/p72-3/p72-5	6	r	542359	548505		DEAD 1; Helicase_C
4.3	69	IMGA\|AC174364_26.2	p72		p72-4/p72-3/p72-5						DEAD 1; Helicase_C
4.3	100	IMGA\|AC155896_32.2	p72		p72-1	2	r	22667358	22673306		DEAD 1; Helicase 1
4.3	136	IMGA\|AC140023_28.2	KIAA0052		mtKIAA0052a-1						DEAD 1; DSHCT 1; H
4.3	136	IMGA\|AC142095_21.2	KIAA0052		mtKIAA0052a-2	7	r	19337954	19348274		DEAD 1; DSHCT 1; H
4.3	136	IMGA\|AC148238_27.2	KIAA0052		mtKIAA0052a-3	4	r	35930623	35940146		DEAD 1; DSHCT 1; H
4.3	136	IMGA\|CR962137_18.2	KIAA0052		mtKIAA0052a-4	5	f	23409311	23417259		DEAD 1; DSHCT 1; H
4.3	339	IMGA\|AC174301_17.2	hDbp5	Dbp5p	mtDbp5	1	f	15039181	15045633
4.3	462	IMGA\|AC152818_1.2	Abstrakt	(Ded1p)	mtAbstrakt-a	1	r	25035687	25037953
4.4	745	IMGA\|CT027662_30.2	Cyp-60		mtCYP-60	5	r	5245890	5248585
4.5	54	IMGA\|CT967303_24.2	CDCL2_p110		mtCDCL2p110-1	3	r	24266930	24269249		Pkinase_Tyr 1; Pkin
4.5	70	IMGA\|AC137522_14.2	RNPC2		mtNPC2a/mtNPC2b	4	f	33036485	33042576		RRM 2
4.5	70	IMGA\|CU041253_29.2	RNPC2		mtNPC2a/mtNPC2b	3	f	34554315	34559382		RRM 2
4.5	99	IMGA\|AC122724_34.2	IMP3		mtIMP3/KOC-1	6	f	1917378	1922370		KH 4
4.5	99	IMGA\|AC148485_39.2	IMP3		mtIMP3/KOC-2						KH 4
4.5	184	IMGA\|AC148965_27.2	PMSCL2		mtPMSCL2-1a	7	f	22679249	22679876		3_5_exonuc 1; HRDC
4.5	184	IMGA\|AC148965_33.2	PMSCL2		mtPMSCL2-1b	7	f	22681196	22686698		3_5_exonuc 1; HRDC
4.5	261	IMGA\|AC150743_39.2	RACK1	Asc1p	mtRACK1a	4	f	38869763	38870711		WD40 5
4.5	294	IMGA\|AC142394_45.2	hSmu-1/FLJ10805		mtSmu-1a	3	r	11554563	11566822
4.5	294	IMGA\|AC147435_58.2	hSmu-1/FLJ10805		mtSmu-1b	3	r	11640514	11652773
4.5	343	IMGA\|AC186676_9.2	KIAA1604		mtKIAA1604-1	7	f	21610565	21611290
4.5	343	IMGA\|CT963129_18.2	KIAA1604		mtKIAA1604-2	3	f	3902216	3902678
4.5	408	IMGA\|CR955006_19.2	DGSI_protein		mtDGCR14	5	f	36034507	36036082
4.5	476	IMGA\|CU151874_5.1	TFIP11/TIP39		mtTFIP11/TIP39a	7	f	14031790	14033723
4.5	544	IMGA\|AC202362_16.1	PUF60		mtCP33/PUF60like	1	f	218619	221289
4.5	552	IMGA\|AC149471_38.2	Ku70		mtKu70	1	f	30909646	30914047
4.5	554	IMGA\|AC126016_11.2	ZNF183		mtZNF183a-1	7	f	29848972	29851070
4.5	554	IMGA\|AC145329_30.2	ZNF183		mtZNF183a-2	7	r	29747890	29749987
4.5	633	IMGA\|AC148821_34.2	MGC4238		mtMORG1-1	4	r	33090013	33093172
4.5	633	IMGA\|AC203549_20.1	MGC4238		mtMORG1-2
4.5	649	IMGA\|AC157535_30.2	FLJ10374		mtCWF16-1	8	r	2494013	2502536
4.5	651	IMGA\|AC174301_41.2	Cactin		mtCactin	1	r	14985172	14987431

5. Possible splicing related proteins

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
5.1	106	IMGA\|AC149582_9.2	Splicing_factor_like		mtSFL1						RRM 1
5.1	106	IMGA\|CR962130_8.2	Splicing_factor_like		mtSFL2	5	f	9040273	9043083		RRM 1
5.1	205	IMGA\|AC202336_1.1	Splicing_factor_like		mtSFL3-1	1	r	4965883	4972076		KH_1 2
5.1	205	IMGA\|AC202336_9.1	Splicing_factor_like		mtSFL3-2	1	f	4902542	4909333		KH_1 2
5.1	547	IMGA\|AC169179_15.2	Splicing_factor_like		mtSFL5-1
5.1	547	IMGA\|AC186137_20.2	Splicing_factor_like		mtSFL5-2	2	f	7692645	7698719
5.1	641	IMGA\|AC147963_34.2	Splicing_factor_like		mtSFL4-1
5.1	641	IMGA\|AC150843_1.2	Splicing_factor_like		mtSFL4-2	1	f	20885138	20889189
5.2	121	IMGA\|AC121244_28.2	DNA_binding_protein_		mtDBP1a-1	4	r	19170073	19174863		NOP5NT 1; NOSIC 1;
5.2	121	IMGA\|CT573507_3.2	DNA_binding_protein_		mtDBP1a-2	5	r	2429576	2433157		NOP5NT 1; NOSIC 1;
5.2	121	IMGA\|CT963113_7.2	DNA_binding_protein_		mtDBP1a-3						NOP5NT 1; NOSIC 1;
5.2	341	IMGA\|AC169178_21.2	RNA_binding_1		mtRBD1b	7	f	15509648	15515744
5.3	258	IMGA\|AC202323_2.1	SPT5		mtSPT5a	9	r	10177731	10180146		KOW 1; Supt5 2
5.3	295	IMGA\|AC146553_39.2	Elongation_Factor(M)		mtEFMa-1	2	r	4925753	4928346
5.3	295	IMGA\|AC169516_26.2	Elongation_Factor(M)		mtEFMa-2	7	f	8988841	8994321
5.3	477	IMGA\|AC140549_7.2	Elongation_Factor		mtEF2	2	r	220589	223801
5.3	759	IMGA\|AC146564_7.2	Elongation_Factor		mtEF1	8	r	22235032	22239267

Database

10 Plant Species

Species Comparisons

Gene Groups

Novel Splicing-related Proteins

Specific Proteins

Medicago truncatula (Mt)

1. Small nuclear Ribonucleoprotein (snRNP)

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

2. Splicing factors

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

3. Splicing regulation

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

4. Novel spliceosome proteins

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

5. Possible splicing related proteins

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

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