PlantGDB

<h2>SRGD</h2>

Database

Species Comparisons

Gene Groups

Novel Splicing-related Proteins

Specific Proteins

Lotus japonicus (Lj)

1. Small nuclear Ribonucleoprotein (snRNP)

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

1.1

chr4.CM0042.1540.nc

SmD2

ljSmD2-1

4

r

67770802

67771898

Sm 1

1.1

chr5.CM1125.670.nd

SmD1

SmD1

ljSmD1-a

5

r

18923475

18923711

Sm 1

1.1

SmE

SmE

ljSmE-a1

Sm 1

1.1

SmE

SmE

ljSmE-a2

Sm 1

1.1

LSM4

LSm4

ljLSM4

Sm 1

1.1

chr2.LjT02E02.160.nd

SmB

SmB1

ljSmB-a

2

r

76485270

76486106

Sm 1

1.1

chr3.CM0164.220.nd

SmD3

SmD3

ljSmD3-b

3

r

73570166

73571781

Sm 1

1.1

chr3.LjT46L11.10.nc

LSM7

LSm7

ljLSM7

3

r

10908518

10909481

Sm 1

1.1

LjSGA_022279.1.1

LSM2

LSm2

ljLSM2

Sm 1

1.1

chr5.CM0852.120.nd

SmF

SmF

ljSmF

5

r

3946575

3947464

Sm 1

1.1

chr6.CM0420.220.nd

LSM1

LSm1

ljLSM1b

6

r

42412915

42416669

Sm 1

1.1

LSM8

LSm8

ljLSM8

Sm 1

1.1

chr1.CM0316.100.nd

LSM3

LSm3

ljLSM3a

1

f

58051588

58053078

Sm 1

1.2

LjT30N18.130.nd

Luc7

ljLuc7

DUF259 1

1.2

Prp39

ljPrp39a-1

HAT 7; TPR-like 1

1.2

Prp39

ljPrp39a-2

HAT 7; TPR-like 1

1.2

chr4.CM0165.550.nd

U1-70K

Snp1

ljU1-70K

4

r

18375306

18380565

RRM 1

1.2

U1C_Subunit

Yhc1

ljU1C

C2H2 1; mrCtermi 3

1.2

chr3.CM0127.780.nd

Related_to_Luc7-like

Luc7

ljLuc7-rl

3

r

87738242

87740865

DUF259 1

1.2

Prp39

ljPrp39b

HAT 4

1.3

LjT29P04.220.nd

SF3a120/SAP114_Subun

Prp21p

ljSAP114-1a-1

SWAP/Surp 2

1.3

LjT29P04.270.nd

SF3a120/SAP114_Subun

Prp21p

ljSAP114-1a-2

SWAP/Surp 2

1.3

SF3b150/SAP145_Subun

Cus1p

ljSF3b150-1

PSP 1; DUF382 1

1.3

SF3b150/SAP145_Subun

Cus1p

ljSF3b150-2

PSP 1; DUF382 1

1.3

SF3b_14b/PHP5A

Rds3p

ljSF3b_14b/PHP5A-a

UPF0123 1

1.3

chr5.CM0260.180.nc

SF3b120/SAP130_Subun

Rse1p

ljSAP130a

5

f

62368446

62372688

CPSF_A 1; WD40-like

1.3

chr2.CM0058.100.nc

U2B''_Subunit

Msl1p

ljU2B''

2

r

64933445

64936801

RRM 2

1.3

U2A'_Subunit

Lea1p

ljU2A

LRR 4

1.3

chr2.CM0308.280.nc

p14

Snu17p

ljP14-1

2

f

73223934

73224308

RRM 1

1.3

chr1.CM0496.90.nd

p14

Snu17p

ljSAP61

1

r

7694906

7702673

C2H2 1

1.3

LjSGA_035312.0.1

SF3b_10

ljSF3b10a

SF3b10 1

1.3

SF3b53/SAP49_Subunit

Hsh49p

ljSAP49a

RRM 2

1.3

chr3.CM0590.350.nc

SF3a66/SAP62_Subunit

Prp11p

ljSAP62

3

f

13724096

13726871

C2H2 1

1.4

116kD_Subunit/elonga

Snu114p

ljU5-116-2a

EFG_C 1; GTP_EFTU

1.4

116kD_Subunit/elonga

Snu114p

ljU5-116-2b

EFG_C 1; GTP_EFTU

1.4

116kD_Subunit/elonga

Snu114p

ljU5-116-2c

EFG_C 1; GTP_EFTU

1.4

116kD_Subunit/elonga

Snu114p

ljU5-116-2d

EFG_C 1; GTP_EFTU

1.4

chr3.CM0279.370.nc

200kD_Subunit/Helica

Brr2p

ljU5-200-1

3

r

18295525

18302514

DEAD 1; Helicase_C

1.4

chr5.LjT14K23.20.nc

200kD_Subunit/Helica

Brr2p

ljU5-200-2

5

f

57805140

57808199

DEAD 1; Helicase_C

1.4

chr3.LjT23O13.150.nd

220kD_Subunit

Prp8p

ljU5-220/Prp8a-1

3

r

78804

83050

Mov34 1

1.4

chr3.LjT23O13.30.nd

220kD_Subunit

Prp8p

ljU5-220/Prp8a-2

3

f

13406

20626

Mov34 1

1.4

chr3.CM0160.70.nc

102KD/Prp6-like

Prp6p

ljU5-102KD

3

r

68349768

68352878

Ubiquitin 1; TPR 3

1.4

LjT41N19.140.nd

116kD_Subunit/elonga

Snu114p

ljU5-116-3

EFG_C 1; GTP_EFTU

1.4

116kD_Subunit/elonga

Snu114p

ljU5-116-1a

EFG_C 1; GTP_EFTU 1

1.4

chr6.LjT06I08.50.nc

15kD_Subunit

Dib1p

ljU5-15

6

f

424234

425552

DIMI 1; Thioredoxin

1.5

chr1.LjT39K18.150.nc

U4/U6-15.5K

Snu13p

ljTri15.5-1a

1

r

5034883

5036574

Ribosomal_L7Ae 1

1.5

U4/U6-61KD

Prp31

ljU5-61/Prp31a

Nop 1

1.5

chr5.CM0260.430.nc

U4/U6-90K/SAP90

Prp3p

ljSAP90-1

5

r

62508432

62512622

1.5

chr5.CM0278.220.nc

U4/U6-60K/SAP60

Prp4p

ljSAP60

5

f

17484489

17486499

WD-40 7;SFM 1;WD40

1.6

Tri-110KD

SAD1

ljTri110-1

SART-1 1

1.6

Tri-110KD

SAD1

ljTri110-2

SART-1 1

1.6

(U4/U6.U5)

Tri-27kD/RY1

ljTri-27kD/RY1

1.6

chr2.CM0249.1090.nc

Tri-65_KD

Snu66p

ljTri65a

2

r

53311584

53315817

UCH 1; ZnF_UBP 1

1.6

chr1.CM0206.120.nd

hSnu23/FLJ31121

Snu23p

ljSnu23

1

f

79791270

79794370

ZnF_U1 1

1.7

U11/U12-25K

(-99_protein)

ljU11/U12-25K-1

C2H2 1

1.7

chr1.LjT04O21.100.nd

U11/U12-25K

(-99_protein)

ljU11/U12-25K-2

1

r

23141959

23142850

C2H2 1

1.7

chr1.CM0104.290.nd

U11/U12-65K

ljU11/U12-65K

1

f

64777532

64783824

RRM 2;PHOSPHOPANTET

2. Splicing factors

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
2.1	49	LjB15A13.120.nd	U2AF35		ljU2AF35/AUS-1						RRM 1; CCHC 2;
2.1	49	chr3.CM0396.90.nc	U2AF35		ljU2AF35/AUS-2	3	r	74731974	74733813		RRM 1; CCHC 2;
2.1	55	chr3.CM0129.150.nc	U2AF65		ljU2AF65a/AULb	3	r	45474722	45480127		RRM 3;
2.1	72	chr1.CM0141.270.nc	PTB/hnRNP_I		ljPTB2	1	r	41095658	41102620		RRM 2
2.1	169	chr5.CM0052.230.nd	PTB/hnRNP_I		ljPTB1	5	f	50565475	50571327		RRM 4
2.1	398	LjSGA_048053.1	SF1/BBP		ljSF1/BBP						RRM 1; CCHC 2; KH
2.1	409	LjSGA_040428.1	U2AF65		ljAUL2-1						RRM 1
2.1	409	chr3.LjT42K05.50.nd	U2AF65		ljAUL2-2	3	r	30391834	30393719		RRM 1
2.1	481	chr1.CM1880.30.nc	CBP80	Cbc2p	osCBP80	1	r	63268697	63274733		MIF4G 1; ARM 3
2.1	635	chr3.CM0160.780.nd	CBP20	Cbc1	ljCBP20	3	f	68770757	68771792		RRM 1
2.2	25	chr5.CM0299.260.nc	SF2/ASF		ljSRp30	5	f	32158990	32163576		RRM 2
2.2	31	LjSGA_021019.1	9G8		ljRSZp21						RRM 1; CCHC 1
2.2	61	chr4.CM0182.440.nc	SC35		ljSC35	4	r	7087605	7089626		RRM 1;
2.2	151	LjSGA_024086.1	TASR-2		ljSCL30a						RRM 1
2.2	204	LjT39A22.50.nd	Plant_Novel_SR_prote		ljRSp40						RRM 2
2.2	292	chr2.CM0405.110.nd	TASR-2		ljSCL30	2	r	66952839	66956445		RRM 1
2.2	752	chr2.CM0249.1120.nc	SF2/ASF		ljSRp34b	2	r	53328542	53332443		RRM 2
2.2	978	chr4.LjT32J05.120.nc	TASR-2		ljSCL28	4	f	47891475	47895007		RRM 1
2.3	13	chr1.CM0122.690.nd	hPrp43	Prp43p	ljPrp43p	1	r	80790368	80793997		DEAD 1; Helicase_C
2.3	255	LjB10M19.170.nd	SR140		ljSR140-1						Surp 1;RRM 1;RPR 1
2.3	549	LjSGA_024947.1	SPF30		ljSPF30						Tudor 1
2.3	647	chr4.CM0229.230.nc	SPF45		ljSPF45	4	r	14748547	14752148		DIII/G-patch domain
2.4	1	LjSGA_009490.3	HSP73/HSPA8		LjHSP73-1						Hsp70 1;
2.4	1	LjSGA_012865.1	HSP73/HSPA8		LjHSP73-2						Hsp70 1;
2.4	1	LjSGA_020408.2	HSP73/HSPA8		LjHSP73-3						Hsp70 1;
2.4	1	LjSGA_024670.1	HSP73/HSPA8		LjHSP73-4						Hsp70 1;
2.4	1	LjSGA_025770.1	HSP73/HSPA8		LjHSP73-5						Hsp70 1;
2.4	1	LjSGA_028864.1	HSP73/HSPA8		LjHSP73-6						Hsp70 1;
2.4	1	LjSGA_030747.1	HSP73/HSPA8		LjHSP73-7						Hsp70 1;
2.4	1	LjSGA_042820.1	HSP73/HSPA8		LjHSP73-8						Hsp70 1;
2.4	1	LjSGA_048515.1	HSP73/HSPA8		LjHSP73-9						Hsp70 1;
2.4	1	LjSGA_051144.1	HSP73/HSPA8		LjHSP73-10						Hsp70 1;
2.4	1	LjSGA_066441.1	HSP73/HSPA8		LjHSP73-11						Hsp70 1;
2.4	1	LjSGA_077967.1	HSP73/HSPA8		LjHSP73-12						Hsp70 1;
2.4	1	LjT41B11.10.nd	HSP73/HSPA8		LjHSP73-13						Hsp70 1;
2.4	1	LjT41B11.100.nd	HSP73/HSPA8		LjHSP73-14						Hsp70 1;
2.4	1	LjT41B11.200.nd	HSP73/HSPA8		LjHSP73-15						Hsp70 1;
2.4	1	chr1.CM0133.1430.nc	HSP73/HSPA8		LjHSP73-16	1	f	22071539	22073217		Hsp70 1;
2.4	1	chr1.CM0147.490.nc	HSP73/HSPA8		LjHSP73-17	1	r	55055500	55057567		Hsp70 1;
2.4	1	chr1.LjT14I13.210.nd	HSP73/HSPA8		LjHSP73-18	1	r	46281189	46283157		Hsp70 1;
2.4	1	chr1.LjT14I13.240.nd	HSP73/HSPA8		LjHSP73-19	1	r	46288676	46290598		Hsp70 1;
2.4	1	chr1.LjT16O03.90.nd	HSP73/HSPA8		LjHSP73-20	1	r	59710814	59712757		Hsp70 1;
2.4	1	chr2.CM0120.590.nd	HSP73/HSPA8		LjHSP73-21	2	f	35637902	35639816		Hsp70 1;
2.4	1	chr2.CM0373.840.nc	HSP73/HSPA8		LjHSP73-22	2	r	20317839	20319832		Hsp70 1;
2.4	1	chr2.CM0373.850.nc	HSP73/HSPA8		LjHSP73-23	2	r	20321728	20323705		Hsp70 1;
2.4	1	chr3.CM0452.230.nd	HSP73/HSPA8		LjHSP73-24	3	r	47797289	47799253		Hsp70 1;
2.4	1	chr4.CM0179.510.nd	HSP73/HSPA8		LjHSP73-25	4	f	38137185	38138192		Hsp70 1;
2.4	1	chr6.CM0118.540.nd	HSP73/HSPA8		LjHSP73-26	6	f	59482952	59485051		Hsp70 1;
2.4	1	chr6.CM0118.670.nc	HSP73/HSPA8		LjHSP73-27	6	f	59550339	59552144		Hsp70 1;
2.4	134	chr5.CM0040.250.nc	G10	Cwc14p	ljG10	5	r	7650883	7654624		G10 1;
2.4	167	chr1.CM0318.70.nd	hSyf3/CRN	Clf1/Syf3p	ljCRN1a-1	1	r	69791250	69792306		TPR 1; HAT 14; TPR
2.4	167	chr2.CM0099.310.nd	hSyf3/CRN	Clf1/Syf3p	ljCRN1a-2	2	f	75540468	75541645		TPR 1; HAT 14; TPR
2.4	168	LjSGA_031559.1	hSyf3/CRN	Clf1/Syf3p	ljCypE1a-1						Pro_isomerase 1
2.4	168	chr1.CM0231.140.nd	hSyf3/CRN	Clf1/Syf3p	ljCypE1a-2	1	f	51837307	51837822		Pro_isomerase 1
2.4	288	LjSGA_062711.1	hSyf1	Syf1p	ljSyf1						TPR 1;HAT 10;TPRli
2.4	297	LjSGA_011702.1	hECM2	Ecm2p	ljECM2-1a						RRM 1; CCCH 1
2.4	407	chr4.CM0042.2070.nc	SPF27/BCAS2		ljSPF27	4	r	68113741	68116099		BCAS2 1
2.4	414	LjSGA_061630.1	hPrp19	Prp19p	ljPrp19a						WD-40 7; Ubox 1
2.4	467	chr6.LjT35H04.230.nd	PRL1	Prp46p	ljPRL1	6	f	48810672	48815486		WD-40 2;WD40like 1
2.4	471	LjSGA_027768.1	GCIP_p29	Syf2	ljGCIPp29
2.4	546	chr4.CM0281.130.nc	AD-002	Cwc15p	ljAD-002	4	f	25095931	25098203		Cwf_Cwc_15 1
2.4	559	chr1.CM0600.100.nd	CDC5	Cef1	ljCDC5	1	r	84317011	84321179		SANT 2
2.4	640	LjSGA_011794.1	beta_catenin-like_1		ljCTNNNBL1						Armadillo 1; ARM 1
2.4	642	LjT39F13.60.nc	KIAA0560		ljAquarius
2.4	645	chr3.CM0261.280.nc	SKIP	Prp45p	ljSKIP	3	r	88296258	88298066		SKIP/SNW 1
2.4	866	LjSGA_028354.1	MGC23918		ljMGC23918
2.4	1100	chr3.CM0282.580.nc	hIsy1	Isy1p	ljIsy1	3	r	8350366	8351274		Lsy1 1
2.5	122	LjSGA_025358.1	hPrp4	kinase	ljPRP4K-1						Pkinase 1;TyrKc 1;
2.5	220	chr2.CM0250.90.nc	TBL1-rp_1		ljTBL1-rp1	2	f	55029273	55036829		WD-40 5; Peptidease
2.5	464	LjSGA_056209.1	N-CoR1		ljN-CoR1						SANT 2;Homeodomain_
2.5	474	chr4.CM0079.120.nd	FBP-21		ljFBP21	4	f	11829193	11832998		C2H2 1
2.5	543	LjT07J23.90.nd	Smc-1		ljSmc1-1						ATP_GTP_A_BS 1;SMC_
2.5	543	chr5.LjT15N12.30.nc	Smc-1		ljSmc1-2	5	r	20809600	20821671		ATP_GTP_A_BS 1;SMC_
2.5	868	LjSGA_058838.1	NPW38		ljNPW38						WW 2
2.6	65	LjSGA_065336.1	ALY		ljALY-1a						RRM 1;
2.6	65	LjT41B11.50.nd	ALY		ljALY-1b						RRM 1;
2.6	80	chr5.CM0345.1300.nc	UAP56		ljUAP56	5	f	9461834	9472329		DEAD 1; Helicase_C
2.6	342	chr3.CM0792.150.nd	Srm160-like		ljSRM102	3	r	78303072	78308314		PWI 1
2.6	345	LjSGA_010297.2	RNPS1		ljSR45/ljRNPS1-1						RRM 1
2.6	345	LjSGA_083953.1	RNPS1		ljSR45/ljRNPS1-2						RRM 1
2.6	348	chr3.LjT40N08.180.nd	Magoh		ljMagoh	2	r	64933445	64936801		Mago_nashi 1
2.6	480	chr2.CM0018.160.nd	Y14		ljY14	2	r	60253610	60255973		RRM 1; RBMB 4
2.7	415	chr4.LjT06I07.140.nd	Prp18	Prp18	ljPrp18-1	4	f	57144151	57147066		Prp18 1; SFM 1
2.7	416	LjSGA_009457.2	Prp18	Prp18	ljPrp17-1a						WD-40 7;
2.7	416	LjSGA_091062.1	Prp18	Prp18	ljPrp17-1b						WD-40 7;
2.7	551	LjT09J10.40.nc	Slu7	Slu7p	ljSLU7-1a
2.7	747	LjSGA_021138.1	Prp17	Prp17p	ljPrp17						WD-40 6
2.8	13	LjSGA_019513.1	Prp2		ljPrp2-1a						DEAD 1; Helicase_C
2.8	293	LjSGA_015470.1	SRm300		ljSRM300like						RRM 1; Filamin/ABP28
2.8	478	LjB08M07.70.nc	hTra-2/SFRS10		ljTra/SFRS1						RRM 1
2.8	979	chr1.CM0133.1540.nc	hDbr1	dbr1	ljDbr1	1	r	22143903	22147994		Metallophos 1;DBRI

3. Splicing regulation

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
3.1	71	chr6.LjT34N14.20.nd	Lammer/CLK	kinase	ljAFC1/ljAFC2	6	f	18343768	18346869		Pkinase 1; TyrKc 1
3.1	209	LjSGA_015537.1	Kinase	SRPK1	ljSRPK1a						Pkinase 1; TyrKc 1
3.1	290	chr1.LjT35C22.10.nc	Kinase	Lammer/CLK_kinase	ljAFC3	1	f	24654050	24657606		Pkinase 1;TyrKc 1;S
3.2	45	LjT12A09.50.nd	Glycine-Rich_RBD		ljGRBP1d/GRBP1c/GRBP1e-1						RRM 1
3.2	45	chr1.CM0410.300.nd	Glycine-Rich_RBD		ljGRBP1d/GRBP1c/GRBP1e-2	1	f	42862086	42863883		RRM 1
3.2	109	chr1.CM0178.490.nc	Glycine-Rich_RBD		ljGRP7/ljGRBP3a-1	1	r	30808991	30809857		RRM 1
3.2	109	chr3.CM0091.630.nd	Glycine-Rich_RBD		ljGRP7/ljGRBP3a-2	3	f	81974029	81974799		RRM 1
3.2	109	chr3.CM0091.670.nd	Glycine-Rich_RBD		ljGRP7/ljGRBP3a-3	3	f	81988253	81988806		RRM 1
3.3	29	CM1092.170.nc	hnRNP_A/B		LjRNPA/B						RRM 2
3.3	29	chr2.LjT48A12.20.nd	hnRNP_A/B		LjRNPA/B-1	2	r	77937375	77940707		RRM 2
3.3	29	chr6.LjT11E14.110.nc	hnRNP_A/B		LjRNPA/B-2	6	f	22096968	22098774		RRM 2
3.3	149	chr2.CM0031.350.nc	hnRNP_A/B		ljUBA2a	2	r	72328949	72330490		RRM 2
3.3	257	chr3.CM0282.340.nc	hnRNP_A/B		ljUBA2c	3	f	8207075	8208445		RRM 2
3.3	418	LjSGA_099738.1	hnRNP_A/B		ljRNPA/B_1						RRM 2
3.3	655	LjSGA_018192.1	hnRNP_A/B		ljRNP_N1						RRM 2;HUDSXLRNA 2
3.3	1098	chr2.LjT32G18.130.nc	hnRNP_A/B		lfRNPA/B_8a	2	r	21932122	21934851		RRM 2; Eggshell 4
3.3	1500	LjSGA_028796.1	hnRNP_A/B		lgRNPA/B						RRM 2
3.4	93	LjSGA_046453.1	hnRNP_R/Q		hnRNP-R3/ljPA/B-1						RRM 3
3.4	120	chr1.CM0010.50.nc	hnRNP_R/Q		lj-hnRNP-R2	1	r	76954096	76956830		RRM 3
3.4	179	chr1.CM0105.460.nc	hnRNP_R/Q		lj-hnRNP-R1	1	r	86770672	86774854		RRM 3
3.4	337	chr4.CM0333.80.nd	_		ljFCA1	4	r	47013241	47022356		RRM 2; WW 1
3.4	350	chr4.CM0337.690.nc	hnRNP_G		lj-hnRNP-G2	4	r	5623456	5624262		RRM 1; CCHC 1
3.4	555	LjSGA_030792.1	hnRNP_P2		lj-hnRNP-P						RRM 1; ZnF_RBZ 2
3.4	639	chr1.CM0600.370.nd	hnRNP_E1/E2		lj-hnRNP-E	1	r	84454006	84456975		KH 3
3.4	867	LjT32M01.240.nd	_		ljFCA2						RRM 2; WW 1
3.4	980	chr6.LjT30N23.10.nd	hnRNP_F/hnRNP_H		lj-hnRNP-H	6	r	21268744	21272389		RRM 2
3.5	107	chr1.LjT29L18.90.nd	hnRNP-like_5		ljAth	1	r	40607318	40611152		HANP4_PAI-RBP! 1
3.5	146	chr4.CM1334.150.nc	hnRNP-like_3		ljRBP45a-1	4	r	3486058	3489985		RRM 3
3.5	146	chr6.CM0139.780.nd	hnRNP-like_3		ljRBP45a-2	6	r	55452312	55455442		RRM 3
3.5	410	chr5.CM0089.1140.nc	hnRNP-like_4		ljRBP47c	5	r	678887	683017		RRM 3
3.5	870	chr4.CM0079.170.nc	hnRNP-like_4		ljRBP47a	4	r	11873795	11877809		RRM 3

4. Novel spliceosome proteins

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
4.1	148	LjSGA_025619.1	eIF3	sub2	lj-eIF3sub2a						WD40 4
4.1	206	chr4.CM0042.1620.nc	hTHO2		ljTHO2	4	r	67820682	67837132		Tho2
4.1	254	LjT07K13.120.nd	KIAA0983		ljKIAA0983-1						Fimp 1
4.1	291	LjSGA_052131.1	eIF3_sub6		lj-eIF3sub6
4.1	400	LjSGA_022120.1	hHPR1		ljHPR1-1
4.1	400	LjSGA_024315.1	hHPR1		ljHPR1-2
4.1	483	chr6.CM0037.190.nd	HsKin17	Rts2p	ljKin17-1	6	f	39712895	39714007
4.1	541	chr5.CM0148.520.nd	CF_I-25kD		ljCFI-25kD-1	5	r	52327516	52330576
4.1	976	LjSGA_049766.1	CPSF_160K		ljCPSF-160k
4.2	32	chr4.CM0227.550.nc	PAB1/PAB2		ljPABP1/ljPAB1	4	r	13239552	13244917		RRM 4
4.2	468	LjSGA_067519.1	PAB1/PAB2		ljPABP6/ljPAB7-1
4.2	468	LjSGA_108851.1	PAB1/PAB2		ljPABP6/ljPAB7-2
4.3	69	chr6.LjT36O06.40.nd	p72		p72-4/p72-3/p72-5	6	f	54951804	54953090		DEAD 1; Helicase_C
4.3	100	chr4.CM0172.160.nc	p72		p72-1	4	r	30223453	30227837		DEAD 1; Helicase 1
4.3	136	chr4.CM0004.610.nc	KIAA0052		ljKIAA0052a	4	f	64869628	64876945		DEAD 1; DSHCT 1; H
4.3	339	LjSGA_021996.2	hDbp5	Dbp5p	ljDbp5-1
4.3	339	LjSGA_074820.1	hDbp5	Dbp5p	ljDbp5-2
4.3	462	chr2.LjT16G06.150.nd	Abstrakt	(Ded1p)	ljAbstrakt-a	2	f	54133287	54134667
4.3	654	CM1489.190.nc	DDX35		ljDDX35
4.4	404	LjT01G11.110.nd	KIAA0073		ljKIA0073
4.4	652	LjSGA_082011.1	PPIase-like_3		ljPPIL3
4.4	745	chr2.CM0168.280.nc	Cyp-60		ljCYP-60	2	r	56841874	56845419
4.4	751	LjSGA_063482.1	SDCCAG10		ljSDCCAG10
4.5	70	LjSGA_015054.2	RNPC2		ljNPC2a/ljNPC2b						RRM 2
4.5	99	LjSGA_002278.2	IMP3		ljIMP3/KOC-1						KH 4
4.5	99	chr1.CM0141.280.nc	IMP3		ljIMP3/KOC-2	1	f	41103886	41106308		KH 4
4.5	180	LjSGA_014745.1	RBM5		ljRBM5-1						G-patch 1; RRM 2;
4.5	180	LjSGA_021297.1	RBM5		ljRBM5-2						G-patch 1; RRM 2;
4.5	184	chr1.LjT38H23.70.nd	PMSCL2		ljPMSCL2-1	1	r	65837687	65843040		3_5_exonuc 1; HRDC
4.5	207	LjSGA_024145.1	DKFZP586O0120		ljDKFZP586O0120						DUF1754 1
4.5	261	chr4.CM0042.2090.nc	RACK1	Asc1p	ljRACK1a	4	f	68125447	68127109		WD40 5
4.5	289	LjSGA_016437.2	AcinusL		ljAcinusL-1						SAP 1
4.5	289	LjSGA_079569.1	AcinusL		ljAcinusL-2						SAP 1
4.5	294	LjSGA_052045.1	hSmu-1/FLJ10805		ljSmu-1a
4.5	294	chr3.CM0135.400.nd	hSmu-1/FLJ10805		ljSmu-1b	3	f	84944556	84945153
4.5	334	chr1.CM0195.50.nd	TIP-49	Rvb1p	ljTIP49-1	1	r	27458666	27462849
4.5	340	chr3.LjT10E18.50.nc	UBL5p	Hub1p	ljUBL5a	3	f	28972106	28972324
4.5	343	LjT48C01.160.nd	KIAA1604		ljKIAA1604-1
4.5	343	LjT48C01.170.nd	KIAA1604		ljKIAA1604-2
4.5	406	LjSGA_029906.1	CA150		ljCA150-1
4.5	406	LjSGA_056466.1	CA150		ljCA150-2
4.5	465	chr3.LjT46L11.80.nc	SF4/F23858		ljSF4	3	r	10947096	10954154
4.5	473	LjSGA_085754.1	NOSIP		ljNOSIP
4.5	476	LjSGA_016567.2	TFIP11/TIP39		ljTFIP11/TIP39a
4.5	484	LjSGA_071984.1	TIP-48		ljRuvB/TIP48a-1
4.5	484	chr6.LjT30N23.70.nd	TIP-48		ljRuvB/TIP48a-2	6	r	21316710	21318944
4.5	544	chr1.CM0361.390.nc	PUF60		ljCP33/PUF60like-1	1	r	77482086	77483849
4.5	544	chr5.CM0571.170.nd	PUF60		ljCP33/PUF60like-2	5	f	17092226	17093946
4.5	552	chr5.LjT42F22.120.nc	Ku70		ljKu70	5	f	62809234	62823640
4.5	554	chr1.CM0088.900.nc	ZNF183		ljZNF183a	1	r	425996	427395
4.5	556	LjSGA_009527.1	MFAP1		ljMFAP1a-1
4.5	556	LjSGA_077056.1	MFAP1		ljMFAP1a-2
4.5	633	chr4.CM0042.1800.nd	MGC4238		ljMORG1	4	f	67934084	67936424
4.5	643	LjT10F13.180.nd	PMSCL2		ljPMSCL2-3
4.5	644	chr6.CM0013.200.nd	PMSCL2		ljRED	6	r	41959363	41963448
4.5	646	LjSGA_040056.1	FLJ90157/DKFZp434E22		ljPSP1
4.5	649	LjSGA_081380.1	FLJ10374		ljCWF16-1
4.5	651	LjSGA_016052.1	Cactin		ljCactin
4.5	748	chr1.CM0496.70.nd	KIAA0853		ljKIAA0853	1	r	7683240	7689952
4.5	749	chr5.LjT39E05.240.nd	FLJ10634		ljCAJ1/FLJ10634	5	f	60343482	60344116
4.5	750	LjSGA_018392.1	FLJ10206		ljFLJ10206
4.5	871	chr5.CM0095.210.nd	MGC13125	Cwc26p	ljMGC13125	5	f	44165683	44169649
4.5	1203	chr4.CM0025.150.nd	NuMA		ljCIP1/ljNuMA	4	f	63550674	63552843

5. Possible splicing related proteins

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

5.1

Splicing_factor_like

ljSFL3

KH_1 2

5.2

chr6.CM0066.620.nc

DNA_binding_protein_

ljDBP2a

6

r

56335196

56344253

5.2

LjT28H07.110.nc

RNA_binding_1

ljRBD1b

5.2

chr4.CM0173.30.nd

Chloroplast

RNA_Binding_31

ljCP31a

4

f

29563101

29565905

5.3

SPT5

ljSPT5a-1

KOW 1; Supt5 2

5.3

SPT5

ljSPT5a-2

KOW 1; Supt5 2

5.3

Elongation_Factor(M)

ljEFMa=1

5.3

Elongation_Factor(M)

ljEFMa-2

5.3

chr6.LjT09E22.140.nd

Elongation_Factor

ljEF2

6

f

72596837

72600389

5.4

Glycine_Rich_Protein

ljGRPs-4

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