Database

Species Comparisons

Gene Groups

Novel Splicing-related Proteins

Specific Proteins

Arabidopsis thaliana (At)

1. Small nuclear Ribonucleoprotein (snRNP)

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
1.1	108	AT2G47640.1	SmD2		atSmD2-a	2	f	19537178	19538624		Sm 1
1.1	108	AT3G62840.1	SmD2		atSmD2-b	3	r	23235490	23236816		Sm 1
1.1	147	AT3G07590.1	SmD1	SmD1	atSmD1-a	3	f	2423085	2424166		Sm 1
1.1	147	AT4G02840.1	SmD1	SmD1	atSmD1-b	4	f	1264627	1266486		Sm 1
1.1	181	AT2G18740.1	SmE	SmE	atSmE-b	2	f	8123221	8125004		Sm 1
1.1	181	AT4G30330.1	SmE	SmE	atSmE-a	4	r	14836548	14838020		Sm 1
1.1	221	AT5G27720.1	LSM4	LSm4	atLSM4	5	f	9815556	9817599		Sm 1
1.1	336	AT4G20440.1	SmB	SmB1	atSmB-b	4	r	11022142	11023752		Sm 1
1.1	336	AT5G44500.1	SmB	SmB1	atSmB-a	5	f	17927453	17929463		Sm 1
1.1	344	AT1G20580.1	SmD3	SmD3	atSmD3-b	1	f	7128884	7130642		Sm 1
1.1	469	AT2G23930.1	SmG	SmG	atSmG-a	2	f	10182251	10183240		Sm 1
1.1	469	AT3G11500.1	SmG	SmG	atSmG-b	3	r	3621409	3622606		Sm 1
1.1	472	AT2G03870.1	LSM7	LSm7	atLSM7	2	f	1180217	1181437		Sm 1
1.1	479	AT1G03330.1	LSM2	LSm2	atLSM2	1	r	817983	819563		Sm 1
1.1	539	AT5G48870.1	LSM5	LSm5	atLSM5/SAD1	5	f	19813338	19814554		Sm 1
1.1	540	AT4G30220.1	SmF	SmF	atSmF	4	r	14802950	14804323		Sm 1
1.1	545	AT3G14080.1	LSM1	LSm1	atLSM1b	3	f	4667365	4669194		Sm 1
1.1	548	AT2G43810.1	LSM6	LSm6	atLSM6b	2	f	18149311	18151295		Sm 1
1.1	548	AT3G59810.1	LSM6	LSm6	atLSM6a	3	f	22096515	22097908		Sm 1
1.1	550	AT1G65700.1	LSM8	LSm8	atLSM8	1	r	24434236	24436287		Sm 1
1.1	561	AT1G21190.1	LSM3	LSm3	atLSM3a	1	r	7419678	7420903		Sm 1
1.1	561	AT1G76860.1	LSM3	LSm3	atLSM3b	1	r	28854414	28855750		Sm 1
1.2	92	AT3G03340.1	Luc7		atLuc7a	3	f	786320	790077		DUF259 1
1.2	92	AT5G17440.1	Luc7		atLuc7b	5	f	5749762	5753643		DUF259 1
1.2	208	AT1G04080.1	Prp39		atPrp39a	1	f	1051343	1056751		HAT 7; TPR-like 1
1.2	403	AT3G50670.1	U1-70K	Snp1	atU1-70K	3	r	18826300	18829618		RRM 1
1.2	463	AT4G03120.1	U1C_Subunit	Yhc1	atU1C	4	f	1385660	1387739		C2H2 1; mrCtermi 3
1.2	475	AT1G44910.1	FBP11	Prp40	atPrp40a	1	f	16975604	16982965		WW 2; FF 5
1.2	538	AT5G51410.1	Related_to_Luc7-like	Luc7	atLuc7-rl	5	r	20881367	20883704		DUF259 1
1.2	981	AT2G47580.1	U1A_Subunit	Mud1	atU1A	2	f	19517187	19518871		RRM 2
1.2	1097	AT5G46400.1	Prp39		atPrp39b	5	f	18820032	18824650		HAT 4
1.3	170	AT1G14640.1	SF3a120/SAP114_Subun	Prp21p	atSAP114-1b	1	f	5023656	5025955		SWAP/Surp 2
1.3	170	AT1G14650.1	SF3a120/SAP114_Subun	Prp21p	atSAP114-1a	1	f	5027662	5030792		SWAP/Surp 2
1.3	203	AT5G64270.1	SF3b160/SAP155_Subun	Hsh155	atSAP155	5	f	25706659	25710925		HEAT 1; ARM 2; SAP
1.3	222	AT4G21660.1	SF3b150/SAP145_Subun	Cus1p	atSF3b150	4	r	11505961	11509841		PSP 1; DUF382 1
1.3	228	AT1G07170.1	SF3b_14b/PHP5A	Rds3p	SF3b_14b/PHP5A-a	1	f	2200134	2201146		UPF0123 1
1.3	228	AT2G30000.1	SF3b_14b/PHP5A	Rds3p	SF3b_14b/PHP5A-b	2	r	12803853	12804977		UPF0123 1
1.3	256	AT3G55200.1	SF3b120/SAP130_Subun	Rse1p	atSAP130a	3	f	20460533	20464556		CPSF_A 1; WD40-like
1.3	256	AT3G55220.1	SF3b120/SAP130_Subun	Rse1p	atSAP130b	3	r	20466921	20470944		CPSF_A 1; WD40-like
1.3	347	AT1G06960.1	U2B''_Subunit	Msl1p	atU2B''a	1	f	2135852	2137702		RRM 2
1.3	347	AT2G30260.1	U2B''_Subunit	Msl1p	atU2B''b	2	r	12905402	12907509		RRM 2
1.3	412	AT1G09760.1	U2A'_Subunit	Lea1p	atU2A	1	r	3159125	3161692		LRR 4
1.3	460	AT5G12190.1	p14	Snu17p	atP14-1	5	r	3940532	3941205		RRM 1
1.3	461	AT5G06160.1	p14	Snu17p	atSAP61	5	r	1862369	1866433		C2H2 1
1.3	466	AT3G23325.1	SF3b_10		SF3b10b	3	f	8345771	8347062		SF3b10 1
1.3	466	AT4G14342.1	SF3b_10		SF3b10a	4	r	8253550	8255508		SF3b10 1
1.3	470	AT2G18510.1	SF3b53/SAP49_Subunit	Hsh49p	atSAP49a	2	r	8031182	8033619		RRM 2
1.3	758	AT2G32600.1	SF3a66/SAP62_Subunit	Prp11p	atSAP62	2	r	13833545	13835663		C2H2 1
1.4	44	AT1G56070.1	116kD_Subunit/elonga	Snu114p	atU5-116-2	1	r	20967930	20971742		EFG_C 1; GTP_EFTU
1.4	75	AT1G20960.1	200kD_Subunit/Helica	Brr2p	atU5-200-2a	1	r	7301748	7310213		DEAD 1; Helicase_C
1.4	75	AT2G42270.1	200kD_Subunit/Helica	Brr2p	atU5-200-2b	2	f	17604330	17611333		DEAD 1; Helicase_C
1.4	75	AT5G61140.1	200kD_Subunit/Helica	Brr2p	atU5-200-1	5	f	24589999	24603514		DEAD 1; Helicase_C
1.4	182	AT1G80070.1	220kD_Subunit	Prp8p	atU5-220/Prp8a	1	f	30118052	30127811		Mov34 1
1.4	182	AT4G38780.1	220kD_Subunit	Prp8p	atU5-220/Prp8b	1	f	30118052	30127811		Mov34 1
1.4	259	AT2G33730.1	100kD_Subunit	Prp28p	atU5-100KD	2	r	14265450	14267972		DEAD 1; Helicase_C
1.4	402	AT4G03430.1	102KD/Prp6-like	Prp6p	atU5-102KD	4	r	1517134	1520563		Ubiquitin 1; TPR 3
1.4	405	AT3G22980.1	116kD_Subunit/elonga	Snu114p	atU5-116-3	3	r	8160156	8163316		EFG_C 1; GTP_EFTU
1.4	413	AT1G06220.1	116kD_Subunit/elonga	Snu114p	atU5-116-1a	1	f	1899964	1904873		EFG_C 1; GTP_EFTU 1
1.4	413	AT5G25230.1	116kD_Subunit/elonga	Snu114p	atU5-116-1b	5	f	8739709	8743594		EFG_C 1; GTP_EFTU 1
1.4	637	AT5G08290.1	15kD_Subunit	Dib1p	atU5-15	5	f	2665976	2667155		DIMI 1; Thioredoxin
1.4	755	AT2G43770.1	40kD_Subunit		atU5-40	2	r	18134061	18136001		WD-40 7
1.4	1099	AT3G27730.1	200kD_Subunit/Helica	Brr2p	atU5-200-3	3	r	10273801	10280362		DEAD 1; Sec63 1; Ru
1.5	223	AT4G12600.1	U4/U6-15.5K	Snu13p	atTri15.5-1b	4	f	7453202	7454481		Ribosomal_L7Ae 1
1.5	223	AT4G22380.1	U4/U6-15.5K	Snu13p	atTri15.5-1c	4	r	11811750	11813000		Ribosomal_L7Ae 1
1.5	223	AT5G20160.1	U4/U6-15.5K	Snu13p	atTri15.5-1a	5	r	6803782	6805201		Ribosomal_L7Ae 1
1.5	260	AT1G60170.1	U4/U6-61KD	Prp31	atU5-61/Prp31a	1	f	22192773	22195400		Nop 1
1.5	411	AT1G28060.1	U4/U6-90K/SAP90	Prp3p	atSAP90-1	1	f	9779138	9782700
1.5	756	AT2G41500.1	U4/U6-60K/SAP60	Prp4p	atSAP60	2	r	17304130	17307426		WD-40 7;SFM 1;WD40
1.6	399	AT5G16780.1	Tri-110KD	SAD1	atTri110	5	r	5517490	5522258		SART-1 1
1.6	633	AT5G57370.1	(U4/U6.U5)	Tri-27kD/RY1	atTri-27kD/RY1	5	f	23244734	23246420
1.6	638	AT4G22350.1	Tri-65_KD	Snu66p	atTri65a	4	r	11803834	11807178		UCH 1; ZnF_UBP 1
1.6	753	AT3G05760.1	hSnu23/FLJ31121	Snu23p	atSnu23	3	f	1707900	1710038		ZnF_U1 1
1.7	225	AT3G07860.1	U11/U12-25K	(-99_protein)	atU11/U12-25K	3	f	2507880	2509509		C2H2 1
1.7	346	AT1G09230.1	U11/U12-65K		atU11/U12-65K	1	r	2979520	2982624		RRM 2;PHOSPHOPANTET
1.7	982	AT2G43370.1	U11/U12-35K		atU11/U12-35kD	2	f	18013370	18015454		RRM 1
1.7	1101	AT3G10400.1	U11/U12-31K	(MADP1)	atU11/U12-31K	3	f	3232608	3233685		RRM 1; CCHC 1

2. Splicing factors

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
2.1	49	AT1G27650.1	U2AF35		atU2AF35a/AUSa	1	f	9614551	9616357		RRM 1; CCHC 2;
2.1	49	AT5G42820.1	U2AF35		atU2AF35/AUSb	5	r	17170212	17171704		RRM 1; CCHC 2;
2.1	55	AT1G60900.1	U2AF65		atU2AF65b/AULa	1	f	22423909	22428022		RRM 3;
2.1	`	AT4G36690.1	U2AF65		atU2AF65a/AULb	4	r	17293992	17297722		RRM 3;
2.1	72	AT3G01150.1	PTB/hnRNP_I		atPTB2a	3	f	51583	54506		RRM 2
2.1	72	AT5G53180.1	PTB/hnRNP_I		atPTB2b	5	r	21568200	21571894		RRM 2
2.1	169	AT1G43190.1	PTB/hnRNP_I		atPTB1	1	r	16275108	16278624		RRM 4
2.1	398	AT5G51300.1	SF1/BBP		atSF1/BBP	5	r	20848897	20852334		RRM 1; CCHC 2; KH
2.1	409	AT2G33440.1	U2AF65		AUL2	2	f	14170640	14173437		RRM 1
2.1	481	AT2G13540.1	CBP80	Cbc2p	atCBP80	2	f	5636884	5642957		MIF4G 1; ARM 3
2.1	553	AT1G10320.1	U2AF35_related_prote		atUrp	1	r	3384164	3388373		RRM 1; CCCH 2
2.1	634	AT5G44200.1	CBP20	Cbc1	atCBP20	5	r	17801814	17804065		RRM 1
2.2	25	AT1G02840.1	SF2/ASF		atSR1/atSRp34	1	f	626741	629819		RRM 2
2.2	25	AT1G09140.1	SF2/ASF		atSRp30	1	r	2942564	2945961		RRM 2
2.2	31	AT1G23860.1	9G8		atRSzp21	1	r	8427356	8429319		RRM 1; CCHC 1
2.2	31	AT2G24590.1	9G8		atRSZp22a	2	f	10449631	10451184		RRM 1; CCHC 1
2.2	31	AT4G31580.1	9G8		atRSZp22	4	f	15306654	15308347		RRM 1; CCHC 1
2.2	61	AT5G64200.1	SC35		atSC35	5	r	25681202	25683641		RRM 1;
2.2	151	AT1G55310.1	TASR-2		atSR33/atSCL33	1	f	20630065	20632898		RRM 1
2.2	151	AT3G13570.1	TASR-2		atSCL30a	3	r	4429298	4432159		RRM 1
2.2	204	AT4G25500.1	Plant_Novel_SR_prote		atRSp40/atRSP35	4	f	13024571	13027440		RRM 2
2.2	204	AT5G52040.1	Plant_Novel_SR_prote		atRSp41	5	f	21130320	21133621		RRM 2
2.2	226	AT2G46610.1	Plant_Novel_SR_prote		atRSp31a	2	r	19136566	19138762		RRM 2
2.2	226	AT3G61860.1	Plant_Novel_SR_prote		atRSp31	3	r	22900068	22902395		RRM 2
2.2	292	AT3G55460.1	TASR-2		atSCL30	3	f	20560808	20563762		RRM 1
2.2	752	AT3G49430.1	SF2/ASF		atSRp34b	3	f	18331546	18335041		RRM 2
2.2	978	AT5G18810.1	TASR-2		atSCL28	5	r	6268718	6271325		RRM 1
2.2	0	AT4G02430	SF2/ASF		atSRp34b	4	f	1068974	1072215		RRM 2
2.2	0	AT3G53500	9G8		atRS2Z32	3	r	19845324	19848060		RRM 1;CCHC 2
2.2	0	AT2G37340	9G8		atRS2Z33	2	r	15677226	15679765		RRM 1;CCHC 2
2.3	13	AT2G47250.1	hPrp43	Prp43p	atPrp43	2	r	19399694	19403044		DEAD 1; Helicase_C
2.3	13	AT3G62310.1	hPrp43	Prp43p	atPrp43	3	r	23057245	23060731		DEAD 1; Helicase_C
2.3	255	AT5G10800.1	SR140		atSR140-2	5	r	3412654	3418382		Surp 1;RRM 1;RPR 1
2.3	255	AT5G25060.1	SR140		atSR140-1	5	r	8634074	8640217		Surp 1;RRM 1;RPR 1
2.3	549	AT2G02570.1	SPF30		atSPF30	2	r	697951	700917		Tudor 1
2.3	647	AT1G30480.1	SPF45		atSPF45	1	f	10790022	10792575		DIII/G-patch domain
2.4	1	AT3G12580.1	HSP73/HSPA8		AtHSP73-1	3	r	3991261	3993792		Hsp70 1;
2.4	1	AT5G02500.1	HSP73/HSPA8		AtHSP73-2	5	r	553745	556442		Hsp70 1;
2.4	1	AT5G42020.1	HSP73/HSPA8		AtHSP73-3	5	r	16807483	16810646		Hsp70 1;
2.4	134	AT4G21110.1	G10	Cwc14p	atG10	4	f	11267185	11268959		G10 1;
2.4	167	AT3G13210.1	hSyf3/CRN	Clf1/Syf3p	atCRN1b	3	f	4244921	4247846		TPR 1; HAT 14; TPR
2.4	167	AT5G41770.1	hSyf3/CRN	Clf1/Syf3p	atCRN1c	5	f	16717996	16721222		TPR 1; HAT 14; TPR
2.4	167	AT5G45990.1	hSyf3/CRN	Clf1/Syf3p	atCRN1a	5	f	18651324	18653892		TPR 1; HAT 14; TPR
2.4	168	AT2G16600.1	hSyf3/CRN	Clf1/Syf3p	atCypE2a/ROC3	2	f	7200807	7201574		Pro_isomerase 1
2.4	168	AT2G21130.1	hSyf3/CRN	Clf1/Syf3p	atCypE1a/CYP2	2	r	9055398	9056232		Pro_isomerase 1
2.4	168	AT4G34870.1	hSyf3/CRN	Clf1/Syf3p	atCypE2b	4	f	16614327	16615313		Pro_isomerase 1
2.4	168	AT4G38740.1	hSyf3/CRN	Clf1/Syf3p	atCypE1b	4	r	18083395	18084251		Pro_isomerase 1
2.4	288	AT5G28740.1	hSyf1	Syf1p	atSyf1	5	f	10780774	10783911		TPR 1;HAT 10;TPRli
2.4	297	AT1G07360.1	hECM2	Ecm2p	atECM2-1a	1	r	2260389	2262865		RRM 1; CCCH 1
2.4	297	AT2G29580.1	hECM2	Ecm2p	atECM2-1b	2	f	12651923	12654336		RRM 1; CCCH 1
2.4	407	AT3G18165.1	SPF27/BCAS2		atSPF27	3	f	6223188	6225372		BCAS2 1
2.4	414	AT1G04510.1	hPrp19	Prp19p	atPrp19a	1	f	1226575	1230827		WD-40 7; Ubox 1
2.4	414	AT2G33340.1	hPrp19	Prp19p	atPrp19b	2	r	14126217	14131153		WD-40 7; Ubox 1
2.4	467	AT3G16650.1	PRL1	Prp46p	atPRL2	3	f	5671067	5675324		WD-40 2;WD40like 1
2.4	467	AT4G15900.1	PRL1	Prp46p	atPRL1	4	f	9023728	9027666		WD-40 2;WD40like 1
2.4	471	AT2G16860.1	GCIP_p29	Syf2	atGCIPp29	2	r	7303919	7306671
2.4	545	AT3G13200.1	AD-002	Cwc15p	atAD-002	3	f	4242125	4244145		Cwf_Cwc_15 1
2.4	559	AT1G09770.1	CDC5	Cef1	atCDC5	1	f	3161841	3165360		SANT 2
2.4	640	AT3G02710.1	beta_catenin-like_1		atCTNNNBL1	3	f	583113	585948		Armadillo 1; ARM 1
2.4	642	AT2G38770.1	KIAA0560		atAquarius	2	r	16202963	16210338
2.4	645	AT1G77180.1	SKIP	Prp45p	atSKIP	1	r	28999618	29002135		SKIP/SNW 1
2.4	866	AT3G05070.1	MGC23918		atMGC23918	3	f	1416148	1417806
2.4	983	AT2G36130.1	PPIase-like_1		atPPIase-like1	2	f	15166773	15168497		Pro_isomerase 1
2.4	1100	AT3G18790.1	hIsy1	Isy1p	atIsy1	3	f	6477699	6479548		Lsy1 1
2.5	122	AT1G13350.1	hPrp4	kinase	atPRP4K-2	1	r	4572419	4576632		Pkinase 1;TyrKc 1;
2.5	122	AT3G25840.1	hPrp4	kinase	atPRP4K-1	3	r	9451861	9457554		Pkinase 1;TyrKc 1;
2.5	122	AT3G53640.1	hPrp4	kinase	atPRP4K-3	3	r	19887007	19888935		Pkinase 1;TyrKc 1;
2.5	220	AT5G67320.1	TBL1-rp_1		atTBL1-rp1	5	f	26857154	26861119		WD-40 5; Peptidease
2.5	464	AT3G52250.1	N-CoR1		atN-CoR1	3	f	19376138	19383100		SANT 2;Homeodomain_
2.5	474	AT1G49590.1	FBP-21		atFBP21	1	f	18354786	18356642		C2H2 1
2.5	543	AT3G54670.1	Smc-1		atSmc1	3	f	20235678	20243960		ATP_GTP_A_BS 1;SMC_
2.5	868	AT2G41020.1	NPW38		atNPW38	2	f	17117263	17121119		WW 2
2.6	65	AT5G02530.1	ALY	Yra1p	atALY-1a	5	r	564085	565863		RRM 1;
2.6	65	AT5G59950.1	ALY		atALY-1b	5	f	24140097	24141858		RRM 1;
2.6	80	AT5G11170.1	UAP56		atUAP56b	5	f	3553117	3556977		DEAD 1; Helicase_C
2.6	80	AT5G11200.1	UAP56		atUAP56a	5	f	3567174	3571015		DEAD 1; Helicase_C
2.6	227	AT1G66260.1	ALY		atALY-2b	1	r	24695640	24698434		RRM 1
2.6	227	AT5G37720.1	ALY		atALY-2a	5	r	14981638	14984606		RRM 1
2.6	342	AT2G29210.1	Srm160-like		atSRM102	2	f	12558051	12562348		PWI 1
2.6	345	AT1G16610.1	RNPS1		atSR45/atRNPS1	1	r	5675704	5678780		RRM 1
2.6	348	AT1G02140.1	Magoh		atMagoh	1	r	403190	404456		Mago_nashi 1
2.6	417	AT3G19760.1	Nuk-34/eIF4A3/DDX48		atDDX48/eIF4A3-1	3	f	6863713	6866593		DEAD 1; Helicase_C
2.6	480	AT1G51510.1	Y14		atY14	1	r	19102799	19104850		RRM 1; RBMB 4
2.6	650	AT1G15200.1	pinin		atPinin	1	r	5228336	5231061		Pinin/SDK/memA 1
2.7	13	AT3G26560.1	Prp22	Prp22	atPrp22	3	r	9749904	9753772		DEAD 1; Helicase_C
2.7	13	AT5G13010.1	Prp22	Prp22	atPrp22	5	f	4122410	4128861		DEAD 1; Helicase_C
2.7	415	AT1G03140.1	Prp18	Prp18	atPrp18-1	1	r	754371	756303		Prp18 1; SFM 1
2.7	416	AT1G10580.1	Prp18	Prp18	atPrp17-1	1	r	3491281	3493737		WD-40 7;
2.7	551	AT1G65660.1	Slu7	Slu7p	atSLU7-1a	1	r	24418107	24421292
2.7	551	AT4G37120.1	Slu7	Slu7p	atSLU7-1b	4	f	17486647	17489294
2.7	747	AT5G54520.1	Prp17	Prp17p	atPrp17-2	5	r	22146514	22149120		WD-40 6
2.7	1102	AT1G27900.1	Prp22	Prp22	atPrp22-3	1	r	9715453	9720568		DEAD 1;Helicase_C
2.7	1103	AT1G26370.1	Prp22	Prp22	atPrp22-2	1	r	9121492	9125557		DEAD 1;Helicase_C
2.8	13	AT1G32490.1	Prp2		atPrp2-1a	1	r	11742054	11749775		DEAD 1; Helicase_C
2.8	13	AT2G35340.1	Prp2		atPrp2-1b	2	f	14872320	14879739		DEAD 1; Helicase_C
2.8	13	AT4G16680.1	Prp2		atPrp2-2	4	r	9388071	9390774		DEAD 1; Helicase_C
2.8	293	AT3G23900.1	SRm300		atSRM300like	3	r	8631606	8636045		RRM 1; Filamin/ABP28
2.8	296	AT1G20920.1	Prp5		atPrp5-1b	1	f	7285114	7289778		DEAD 1; Helicase_C
2.8	296	AT3G09620.1	Prp5		atPrp5-1a	3	r	2949152	2952205		DEAD 1; Helicase_C
2.8	478	AT1G07350.1	hTra-2/SFRS10		atTra/SFRS1	1	r	2257425	2260101		RRM 1
2.8	754	AT2G47330.1	Prp5		atPrp5-2	2	r	19428897	19431720		DEAD 1;Helicase_C
2.8	979	AT4G31770.1	hDbr1	dbr1	atDbr1	4	r	15370066	15372596		Metallophos 1;DBRI

3. Splicing regulation

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
3.1	71	AT3G53570.1	Lammer/CLK	kinase	AFC1	3	r	19861300	19864499		Pkinase 1; TyrKc 1
3.1	71	AT4G24740.1	Lammer/CLK	kinase	AFC2	4	r	12754529	12757773		Pkinase 1; TyrKc 1
3.1	135	AT3G44850.1	Kinase	SRPK2	atSRPK2c	3	r	16374617	16376931		Pkinase 1; TyrKc 1
3.1	135	AT3G53030.1	Kinase	SRPK2	atSRPK2b	3	f	19662281	19664505		Pkinase 1; TyrKc 1
3.1	135	AT5G22840.1	Kinase	SRPK2	atSRPK2a	5	r	7630717	7633223		Pkinase 1; TyrKc 1
3.1	209	AT2G17530.1	Kinase	SRPK1	atSRPK1a	2	f	7626359	7629149		Pkinase 1; TyrKc 1
3.1	209	AT4G35500.1	Kinase	SRPK1	atSRPK1b	4	f	16857299	16859580		Pkinase 1; TyrKc 1
3.1	290	AT4G32660.1	Kinase	Lammer/CLK_kinase	AFC3	4	f	15756128	15759314		Pkinase 1;TyrKc 1;S
3.2	45	AT3G23830.1	Glycine-Rich_RBD		atGRBP1d	3	r	8606477	8608055		RRM 1
3.2	45	AT4G13850.1	Glycine-Rich_RBD		atGRBP1c	4	f	8020952	8022260		RRM 1
3.2	45	AT5G61030.1	Glycine-Rich_RBD		atGRBP1e	5	f	24560451	24562306		RRM 1
3.2	109	AT2G21660.1	Glycine-Rich_RBD		AtGRP7/atGRBP3a	2	r	9265249	9266393		RRM 1
3.3	29	AT3G07810.1	hnRNP_A/B		AtRNPA/B_6	3	f	2492273	2495750		RRM 2
3.3	29	AT4G26650.1	hnRNP_A/B		AtRNPA/B_4	4	f	13444850	13448212		RRM 2
3.3	29	AT5G47620.1	hnRNP_A/B		AtRNPA/B_5	5	r	19302270	19304737		RRM 2
3.3	29	AT5G55550.1	hnRNP_A/B		AtRNPA/B_3	5	r	22501535	22504011		RRM 2
3.3	149	AT2G41060.1	hnRNP_A/B		UBA2b	2	f	17126989	17129563		RRM 2
3.3	149	AT3G56860.1	hnRNP_A/B		UBA2a	3	r	21048889	21052237		RRM 2
3.3	257	AT3G15010.1	hnRNP_A/B		UBA2c	3	f	5052731	5054918		RRM 2
3.3	418	AT4G14300.1	hnRNP_A/B		AtRNPA/B_1	4	f	8231017	8232991		RRM 2
3.3	648	AT1G17640.1	hnRNP_A/B		AtRNPA/B_8b	1	r	6067394	6069098		RRM 2
3.3	655	AT3G13224.1	hnRNP_A/B		AtRNP_N1	3	f	4254760	4257409		RRM 2;HUDSXLRNA 2
3.3	1098	AT5G40490.1	hnRNP_A/B		AtRNPA/B_8a	5	f	16225376	16227709		RRM 2; Eggshell 4
3.3	1500	AT1G58470.1	hnRNP_A/B		AtRNPA/B_7	1	f	21727024	21728760		RRM 2
3.4	93	AT2G44710.1	hnRNP_R/Q		hnRNP-R3/AtRNPA/B	2	f	18432719	18437132		RRM 3
3.4	120	AT3G52660.1	hnRNP_R/Q		hnRNP-R2	3	f	19521660	19524906		RRM 3
3.4	179	AT4G00830.1	hnRNP_R/Q		hnRNP-R1	4	f	352023	355233		RRM 3
3.4	183	AT1G03457.1	CUG-BP		AtCUG-BP2	1	r	860788	864125		RRM 3; HUDSXLRNA 4
3.4	183	AT4G03110.1	CUG-BP		AtCUG-BP1	4	r	1376306	1379420		RRM 3; HUDSXLRNA 4
3.4	337	AT4G16280.3	_		atFCA1	4	r	9207163	9214412		RRM 2; WW 1
3.4	350	AT3G26420.1	hnRNP_G		at-hnRNP-G2	3	f	9671517	9676005		RRM 1; CCHC 1
3.4	555	AT1G50300.1	hnRNP_P2		at-hnRNP-P	1	r	18628555	18631946		RRM 1; ZnF_RBZ 2
3.4	639	AT3G04610.1	hnRNP_E1/E2		at-hnRNP-E	3	r	1250553	1254873		KH 3
3.4	746	AT5G66010.1	hnRNP_F/hnRNP_H		at-hnRNP-F/AtRNPH/F_	5	f	26399528	26400999		RRM 2
3.4	867	AT2G47310.1	_		atFCA2	2	f	19423684	19427277		RRM 2; WW 1
3.4	869	AT1G60650.1	hnRNP_G		at-hnRNP-G3	1	f	22339809	22342297		RRM 1; CCHC 1
3.4	869	AT5G04280.1	hnRNP_G		at-hnRNP-G1	5	f	1192274	1195662		RRM 1; CCHC 1
3.4	980	AT3G20890.1	hnRNP_F/hnRNP_H		at-hnRNP-H/AtRNPH/F	3	f	7319848	7321054		RRM 2
3.5	107	AT4G16830.1	hnRNP-like_5		Ath1	4	f	9470385	9472594		HANP4_PAI-RBP! 1
3.5	107	AT4G17520.1	hnRNP-like_5		Ath2	4	f	9771297	9773592		HANP4_PAI-RBP! 1
3.5	107	AT5G47210.1	hnRNP-like_5		Ath3	5	r	19169022	19171263		HANP4_PAI-RBP! 1
3.5	137	AT1G17370.1	hnRNP-like_1		AtUBP1b	1	r	5951542	5955037		RRM 3
3.5	137	AT3G14100.1	hnRNP-like_1		AtUBP1c	3	f	4672919	4676162		RRM 3
3.5	146	AT4G27000.1	hnRNP-like_3		atRBP45c	4	r	13554604	13557854		RRM 3
3.5	146	AT5G54900.1	hnRNP-like_3		atRBP45a	5	f	22295383	22298346		RRM 3
3.5	410	AT1G47490.1	hnRNP-like_4		AtRBP47c	1	f	17424669	17427475		RRM 3
3.5	410	AT1G47500.1	hnRNP-like_4		AtRBP47c'	1	f	17432518	17435064		RRM 3
3.5	636	AT5G19350.1	hnRNP-like_3		atRBP45d	5	f	6518838	6521474		RRM 3
3.5	870	AT1G49600.1	hnRNP-like_4		AtRBP47a	1	r	18356886	18360150		RRM 3
3.5	870	AT3G19130.1	hnRNP-like_4		AtRBP47b	3	r	6611198	6614044		RRM 3
3.5	2283	AT2G19380.1	hnRNP-like_2		UBA1c	2	f	8383856	8386604
3.5	2283	AT2G22090.1	hnRNP-like_2		UBA1a	2	r	9388260	9390507
3.5	2283	AT2G22100.1	hnRNP-like_2		UBA1b	2	r	9392210	9393562

4. Novel spliceosome proteins

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
4.1	148	AT2G46280.1	eIF3	sub2	at-eIF3sub2a	2	r	19003426	19005536		WD40 4
4.1	148	AT2G46290.1	eIF3	sub2	at-eIF3sub2b	2	r	19005771	19007879		WD40 4
4.1	206	AT1G24706.1	hTHO2		atTHO2	1	f	8741940	8755558		Tho2
4.1	254	AT5G42920.1	KIAA0983		atKIAA0983-1	5	r	17206151	17209535		Fimp 1
4.1	291	AT3G57290.1	eIF3_sub6		at-eIF3sub6	3	r	21196550	21199183
4.1	335	AT5G08550.1	C21orf66		atC21orf66	5	r	2765642	2770282
4.1	400	AT5G09860.1	hHPR1		atHPR1	5	f	3066632	3070933
4.1	483	AT1G55460.1	HsKin17	Rts2p	atKin17-1	1	f	20707478	20709024
4.1	541	AT4G25550.1	CF_I-25kD		atCFI-25kD-1	4	f	13048377	13051169
4.1	976	AT5G51660.1	CPSF_160K		atCPSF-160k	5	f	20980215	20989427
4.1	1205	AT4G29820.1	CF_I-25kD		atCFI-25kD-2	4	r	14595680	14597481
4.2	32	AT1G22760.1	PAB1/PAB2		atPABP1/atPAB1	1	f	8055325	8059015		RRM 4
4.2	32	AT1G49760.1	PAB1/PAB2		atPABP7/atPAB8	1	f	18416480	18420047		RRM 4
4.2	32	AT1G71770.1	PAB1/PAB2		atPABP5/atPAB5	1	r	26990508	26993447		RRM 4
4.2	32	AT2G23350.1	PAB1/PAB2		atPABP4/atPAB4	2	f	9943053	9946269		RRM 4
4.2	32	AT4G34110.1	PAB1/PAB2		atPABP2/atPAB2	4	f	16336387	16340098		RRM 4
4.2	468	AT2G36660.1	PAB1/PAB2		atPABP6/atPAB7	2	r	15361321	15364398
4.2	2282	AT3G16380.1	PAB1/PAB2		atPABP1/atPAB6	3	r	5558676	5560993
4.3	69	AT3G01540.1	p72		p72-4	3	r	212751	216671		DEAD 1; Helicase_C
4.3	69	AT3G06480.1	p72		p72-3	3	r	1985455	1990153		DEAD 1; Helicase_C
4.3	69	AT5G14610.1	p72		p72-5	5	f	4710563	4715069		DEAD 1; Helicase_C
4.3	100	AT1G55150.1	p72		p72-1	1	f	20574480	20577320		DEAD 1; Helicase 1
4.3	136	AT1G59760.1	KIAA0052		atKIAA0052a	1	r	21984445	21990175		DEAD 1; DSHCT 1; H
4.3	136	AT2G06990.1	KIAA0052		atKIAA0052b	2	f	2894940	2901078		DEAD 1; DSHCT 1; H
4.3	339	AT3G53110.1	hDbp5	Dbp5p	atDbp5	3	f	19687740	19690661
4.3	462	AT4G33370.1	Abstrakt	(Ded1p)	atAbstrakt-b	4	r	16069669	16071405
4.3	462	AT5G51280.1	Abstrakt	(Ded1p)	atAbstrakt-a	5	f	20841245	20843806
4.3	654	AT4G18465.1	DDX35		atDDX35	4	f	10197056	10201611
4.4	404	AT3G44600.1	KIAA0073		atKIA0073	3	r	16164935	16169262
4.4	652	AT1G01940.1	PPIase-like_3		atPPIL3	1	f	323027	324917
4.4	745	AT5G67530.1	Cyp-60		atCYP-60	5	f	26941182	26944146
4.4	751	AT4G33060.1	SDCCAG10		atSDCCAG10	4	f	15948490	15952223
4.5	54	AT1G67580.1	CDCL2_p110		atCDCL2p110-1	1	r	25327284	25331379		Pkinase_Tyr 1; Pkin
4.5	70	AT2G16940.1	RNPC2		atNPC2b	2	r	7342607	7347408		RRM 2
4.5	70	AT5G09880.1	RNPC2		atNPC2a	5	r	3081442	3085264		RRM 2
4.5	99	AT5G15270.1	IMP3		atIMP3/KOC	5	f	4958337	4962008		KH 4
4.5	180	AT3G54230.1	RBM5		atRBM5	3	f	20073104	20080264		G-patch 1; RRM 2;
4.5	184	AT1G54440.1	PMSCL2		atPMSCL2-2	1	f	20323053	20328067		3_5_exonuc 1; HRDC
4.5	184	AT5G35910.1	PMSCL2		atPMSCL2-1	5	r	14029686	14035405		3_5_exonuc 1; HRDC
4.5	207	AT1G16810.1	DKFZP586O0120		atDKFZP586O0120	1	f	5755588	5756895		DUF1754 1
4.5	261	AT1G18080.1	RACK1	Asc1p	atRACK1c/ARCA	1	f	6222201	6224151		WD40 5
4.5	261	AT1G48630.1	RACK1	Asc1p	atRACK1b	1	r	17981773	17983327		WD40 5
4.5	261	AT3G18130.1	RACK1	Asc1p	atRACK1a	3	r	6210904	6212433		WD40 5
4.5	289	AT4G39680.1	AcinusL		atAcinusL	4	r	18414306	18417530		SAP 1
4.5	294	AT1G73720.1	hSmu-1/FLJ10805		atSmu-1	1	f	27725002	27729931
4.5	334	AT5G22330.1	TIP-49	Rvb1p	atTIP49	5	r	7390796	7394194
4.5	340	AT3G45180.1	UBL5p	Hub1p	atUBL5b	3	r	16538991	16539212
4.5	340	AT5G42300.1	UBL5p	Hub1p	atUBL5a	5	r	16912333	16913930
4.5	343	AT1G80930.1	KIAA1604		atKIAA1604	1	r	30405432	30409710
4.5	406	AT3G19840.1	CA150		atCA150	3	f	6891129	6897227
4.5	408	AT3G07790.1	DGSI_protein		atDGCR14	3	f	2487369	2489220
4.5	465	AT3G52120.1	SF4/F23858		atSF4	3	f	19328711	19331970
4.5	473	AT1G61620.1	NOSIP		atNOSIP	1	f	22737543	22739430
4.5	476	AT1G17070.1	TFIP11/TIP39		atTFIP11/TIP39a	1	f	5837590	5840332
4.5	476	AT2G42330.1	TFIP11/TIP39		atTFIP11/TIP39b	2	r	17630729	17634089
4.5	484	AT3G49830.1	TIP-48		atRuvB/TIP48a	3	f	18482383	18483940
4.5	484	AT5G67630.1	TIP-48		atRuvB/TIP48b	5	r	26967381	26969394
4.5	544	AT3G52380.1	PUF60		atCP33/PUF60like	3	f	19421397	19423097
4.5	552	AT1G16970.1	Ku70		atKu70	1	r	5800767	5805799
4.5	554	AT1G01350.1	ZNF183		atZNF183a	1	f	136124	138162
4.5	554	AT5G06420.1	ZNF183		atZNF183b	5	f	1961411	1963038
4.5	556	AT4G08580.1	MFAP1		atMFAP1b	4	f	5461483	5463907
4.5	556	AT5G17900.1	MFAP1		atMFAP1a	5	f	5924707	5926901
4.5	633	AT5G64730.1	MGC4238		atMORG1	5	f	25873112	25875267
4.5	643	AT2G32415.1	PMSCL2		atPMSCL2-3	2	r	13761137	13765456
4.5	644	AT2G26460.1	PMSCL2		atRED	2	r	11254932	11258973
4.5	646	AT1G67210.1	FLJ90157/DKFZp434E22		atPSP1	1	f	25140815	25144043
4.5	646	AT5G38600.1	FLJ90157/DKFZp434E22		atPSP2	5	f	15456595	15460767
4.5	649	AT1G17130.1	FLJ10374		atCWF16-1	1	f	5854148	5856697
4.5	651	AT1G03910.1	Cactin		atCactin	1	f	996115	1000231
4.5	748	AT5G53440.1	KIAA0853		atKIAA0853	5	r	21683679	21687970
4.5	749	AT5G23590.1	FLJ10634		atCAJ1/FLJ10634	5	r	7953529	7955640
4.5	750	AT5G23080.1	FLJ10206		atFLJ10206	5	r	7742940	7748933
4.5	871	AT1G31870.1	MGC13125	Cwc26p	atMGC13125	1	f	11436747	11440109
4.5	977	AT5G22080.1	SPF31		atSPF31/Jiv	5	r	7310378	7313619
4.5	1203	AT5G41790.1	NuMA		atCIP1/atNuMA	5	f	16727530	16732847
4.5	3414	AT2G32050.1	FLJ10374		atCWF16-3	2	r	13637879	13637879
4.5	3414	AT3G43250.1	FLJ10374		atCWF16-2	3	f	15216713	15217462

5. Possible splicing related proteins

Group	CIWOG	Gene	hHomologs	SeHomologs	Gene Name	Chr	str	from	to	Txn	Domains	Transcripts
5.1	106	AT4G35785.1	Splicing_factor_like		atSFL1	4	r	16952963	16955266		RRM 1
5.1	205	AT2G25970.1	Splicing_factor_like		atSFL3	2	r	11071651	11075669		KH_1 2
5.1	224	AT3G63400.1	Splicing_factor_like		atSFL6a	3	f	23412023	23415659		Pro_isomerase 1
5.1	542	AT3G56070.1	Splicing_factor_like		atSFL6b	3	r	20806749	20808152
5.1	547	AT3G11960.1	Splicing_factor_like		atSFL5	3	f	3786386	3793375
5.1	641	AT2G40650.1	Splicing_factor_like		atSFL4	2	r	16963319	16965752
5.2	121	AT3G05060.1	DNA_binding_protein_		atDBP1a	3	r	1412867	1415966		NOP5NT 1; NOSIC 1;
5.2	121	AT5G27120.1	DNA_binding_protein_		atDBP1b	5	f	9540925	9543871		NOP5NT 1; NOSIC 1;
5.2	333	AT5G58470.1	RNA_binding_2		atRBD2b	5	r	23637707	23640920
5.2	338	AT4G05420.1	DNA_binding_protein_		atDBP2b	4	f	2746121	2752943
5.2	338	AT4G21100.1	DNA_binding_protein_		atDBP2a	4	r	11258761	11265463
5.2	341	AT2G38610.1	RNA_binding_1		atRBD1b	2	r	16147113	16149873
5.2	401	AT4G24770.1	Chloroplast	RNA_Binding_31	atCP31a	4	r	12766030	12768040
5.2	401	AT5G50250.1	Chloroplast	RNA_Binding_31	atCP31b	5	r	20452487	20454013
5.2	1204	AT5G06210.1	Similar_to_RNA_bindi		atRBD5	5	f	1878471	1879740
5.3	258	AT2G34210.1	SPT5		atSPT5b	2	f	14445938	14450522		KOW 1; Supt5 2
5.3	258	AT4G08350.1	SPT5		atSPT5a	4	f	5286229	5292239		KOW 1; Supt5 2
5.3	295	AT1G45332.1	Elongation_Factor(M)		atEFMb	1	r	17172322	17176821
5.3	295	AT2G45030.1	Elongation_Factor(M)		atEFMa	2	f	18572411	18576970
5.3	477	AT1G09660.1	Elongation_Factor		atEF2	1	r	3127771	3131094
5.3	759	AT1G62750.1	Elongation_Factor		atEF1	1	r	23233434	23236447
5.4	1096	AT5G49350.1	Glycine_Rich_Protein		atGRPs-4	5	r	20009741	20011099
5.4	1767	AT5G07520.1	Glycine_Rich_Protein		AtGRP17	5	r	2379924	2381317
5.4	1767	AT5G07530.1	Glycine_Rich_Protein		AtGRP17	5	r	2382468	2384521
5.4	1767	AT5G07550.1	Glycine_Rich_Protein		AtGRP19	5	r	2388310	2389249
5.4	1767	AT5G07560.1	Glycine_Rich_Protein		AtGRP20	5	r	2390207	2391075

Database

10 Plant Species

Species Comparisons

Gene Groups

Novel Splicing-related Proteins

Specific Proteins

Arabidopsis thaliana (At)

1. Small nuclear Ribonucleoprotein (snRNP)

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

2. Splicing factors

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

3. Splicing regulation

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

4. Novel spliceosome proteins

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

5. Possible splicing related proteins

Group

CIWOG

Gene

hHomologs

SeHomologs

Gene Name

Chr

str

from

to

Txn

Domains

Transcripts

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