5.2 Nucleotide Binding proteins
Species |
CIWOG |
Gene |
hHomologs |
SeHomologs |
Gene Name |
Barta Name |
Chr |
str |
from |
to |
Txn |
Domains |
Transcripts |
|
| At | 121 | AT3G05060.1 | DNA_binding_protein_ | atDBP1a | 3 | r | 1412867 | 1415966 | NOP5NT 1; NOSIC 1; | |||||
| At | 121 | AT5G27120.1 | DNA_binding_protein_ | atDBP1b | 5 | f | 9540925 | 9543871 | NOP5NT 1; NOSIC 1; | |||||
| At | 333 | AT5G58470.1 | RNA_binding_2 | atRBD2b | 5 | r | 23637707 | 23640920 | ||||||
| At | 338 | AT4G05420.1 | DNA_binding_protein_ | atDBP2b | 4 | f | 2746121 | 2752943 | ||||||
| At | 338 | AT4G21100.1 | DNA_binding_protein_ | atDBP2a | 4 | r | 11258761 | 11265463 | ||||||
| At | 341 | AT2G38610.1 | RNA_binding_1 | atRBD1b | 2 | r | 16147113 | 16149873 | ||||||
| At | 401 | AT4G24770.1 | Chloroplast | RNA_Binding_31 | atCP31a | 4 | r | 12766030 | 12768040 | |||||
| At | 401 | AT5G50250.1 | Chloroplast | RNA_Binding_31 | atCP31b | 5 | r | 20452487 | 20454013 | |||||
| At | 1204 | AT5G06210.1 | Similar_to_RNA_bindi | atRBD5 | 5 | f | 1878471 | 1879740 | ||||||
| Gm | 121 | Glyma11g12200.1 | DNA_binding_protein_ | gmDBP1a-1 | 11 | r | 8710340 | 8714631 | NOP5NT 1; NOSIC 1; | |||||
| Gm | 121 | Glyma12g04400.1 | DNA_binding_protein_ | gmDBP1a-2 | 12 | r | 2896922 | 2901866 | NOP5NT 1; NOSIC 1; | |||||
| Gm | 121 | Glyma12g04400.2 | DNA_binding_protein_ | gmDBP1a-2 | 12 | r | 2896922 | 2901866 | NOP5NT 1; NOSIC 1; | |||||
| Gm | 333 | Glyma02g39640.1 | RNA_binding_2 | gmRBD2b-1 | 2 | f | 44891112 | 44895481 | ||||||
| Gm | 333 | Glyma11g29430.1 | RNA_binding_2 | gmRBD2b-2 | 11 | f | 30087895 | 30090875 | ||||||
| Gm | 333 | Glyma14g37690.1 | RNA_binding_2 | gmRBD2b-3 | 14 | f | 46993866 | 47005398 | ||||||
| Gm | 333 | Glyma18g06560.1 | RNA_binding_2 | gmRBD2b-4 | 18 | r | 5112681 | 5115923 | ||||||
| Gm | 338 | Glyma05g30530.1 | DNA_binding_protein_ | gmDBP2a-1 | 5 | r | 35896906 | 35912385 | ||||||
| Gm | 338 | Glyma08g13680.1 | DNA_binding_protein_ | gmDBP2a-2 | 8 | r | 10003858 | 10014764 | ||||||
| Gm | 338 | Glyma12g08330.1 | DNA_binding_protein_ | gmDBP2a-3 | 12 | r | 6069605 | 6073455 | ||||||
| Gm | 341 | Glyma03g00370.1 | RNA_binding_1 | gmRBD1b-1 | 3 | f | 161434 | 166295 | ||||||
| Gm | 341 | Glyma09g40820.1 | RNA_binding_1 | gmRBD1b-2 | 9 | f | 45635237 | 45642452 | ||||||
| Gm | 341 | Glyma09g40820.2 | RNA_binding_1 | gmRBD1b-2 | 9 | f | 45635237 | 45642452 | ||||||
| Gm | 341 | Glyma16g34750.1 | RNA_binding_1 | gmRBD1b-3 | 16 | r | 37305130 | 37309306 | ||||||
| Gm | 341 | Glyma18g44980.1 | RNA_binding_1 | gmRBD1b-4 | 18 | r | 54745772 | 54752385 | ||||||
| Gm | 401 | Glyma04g36420.1 | Chloroplast | RNA_Binding_31 | gmCP31a-1 | 4 | f | 42938576 | 42941592 | |||||
| Gm | 401 | Glyma04g36420.2 | Chloroplast | RNA_Binding_31 | gmCP31a-1 | 4 | f | 42938576 | 42941592 | |||||
| Gm | 401 | Glyma05g02800.1 | Chloroplast | RNA_Binding_31 | gmCP31a-2 | 5 | f | 2139189 | 2141877 | |||||
| Gm | 401 | Glyma06g18470.1 | Chloroplast | RNA_Binding_31 | gmCP31a-3 | 6 | r | 14798659 | 14801423 | |||||
| Gm | 401 | Glyma17g13470.1 | Chloroplast | RNA_Binding_31 | gmCP31a-4 | 17 | f | 10311241 | 10313650 | |||||
| Gm | 1204 | Glyma03g35650.1 | Similar_to_RNA_bindi | gmRBD5 | 3 | f | 42787730 | 42789485 | ||||||
| Lj | 338 | chr6.CM0066.620.nc | DNA_binding_protein_ | ljDBP2a | 6 | r | 56335196 | 56344253 | ||||||
| Lj | 341 | LjT28H07.110.nc | RNA_binding_1 | ljRBD1b | ||||||||||
| Lj | 401 | chr4.CM0173.30.nd | Chloroplast | RNA_Binding_31 | ljCP31a | 4 | f | 29563101 | 29565905 | |||||
| Mt | 121 | IMGA|AC121244_28.2 | DNA_binding_protein_ | mtDBP1a-1 | 4 | r | 19170073 | 19174863 | NOP5NT 1; NOSIC 1; | |||||
| Mt | 121 | IMGA|CT573507_3.2 | DNA_binding_protein_ | mtDBP1a-2 | 5 | r | 2429576 | 2433157 | NOP5NT 1; NOSIC 1; | |||||
| Mt | 121 | IMGA|CT963113_7.2 | DNA_binding_protein_ | mtDBP1a-3 | NOP5NT 1; NOSIC 1; | |||||||||
| Mt | 341 | IMGA|AC169178_21.2 | RNA_binding_1 | mtRBD1b | 7 | f | 15509648 | 15515744 | ||||||
| Os | 121 | LOC_Os03g22730.1 | DNA_binding_protein_ | osDBP1a-1 | 3 | r | 13125169 | 13128611 | NOP5NT 1; NOSIC 1; | |||||
| Os | 121 | LOC_Os03g22740.1 | DNA_binding_protein_ | osDBP1a-2 | 3 | r | 13132524 | 13135898 | NOP5NT 1; NOSIC 1; | |||||
| Os | 333 | LOC_Os01g07070.1 | RNA_binding_2 | osRBD2b | 1 | f | 3321774 | 3326179 | ||||||
| Os | 333 | LOC_Os01g07070.2 | RNA_binding_2 | osRBD2b | 1 | f | 3321774 | 3326525 | ||||||
| Os | 333 | LOC_Os01g07070.3 | RNA_binding_2 | osRBD2b | 1 | f | 3321790 | 3327256 | ||||||
| Os | 333 | LOC_Os01g07070.4 | RNA_binding_2 | osRBD2b | 1 | f | 3321774 | 3326525 | ||||||
| Os | 338 | LOC_Os05g51480.1 | DNA_binding_protein_ | osDBP2a | 5 | f | 29449210 | 29457409 | ||||||
| Os | 338 | LOC_Os05g51480.2 | DNA_binding_protein_ | osDBP2a | 5 | f | 29449210 | 29457407 | ||||||
| Os | 341 | LOC_Os07g12490.1 | RNA_binding_1 | osRBD1b | 7 | f | 7119724 | 7125463 | ||||||
| Os | 401 | LOC_Os09g39180.1 | Chloroplast | RNA_Binding_31 | osCP31a | 9 | r | 22504522 | 22507074 | |||||
| Os | 1204 | LOC_Os04g33810.1 | Similar_to_RNA_bindi | osRBD5 | 4 | f | 20312202 | 20313764 | ||||||
| Pp | 121 | estExt_fgenesh1_pm.C_220029 | DNA_binding_protein_ | ppDBP1a-1 | 22 | r | 1429859 | 1432633 | NOP5NT 1; NOSIC 1; | |||||
| Pp | 121 | estExt_fgenesh1_pg.C_110141 | DNA_binding_protein_ | ppDBP1a-2 | 11 | f | 1957649 | 1960330 | NOP5NT 1; NOSIC 1; | |||||
| Pp | 333 | estExt_fgenesh1_pg.C_4620015 | RNA_binding_2 | ppRBD2b-1 | 462 | r | 139658 | 141801 | ||||||
| Pp | 333 | fgenesh2_pg.scaffold_148000004 | RNA_binding_2 | ppRBD2b-2 | 148 | r | 43432 | 44442 | ||||||
| Pp | 338 | fgenesh1_pg.scaffold_458000001 | DNA_binding_protein_ | ppDBP2a-1 | 458 | f | 28362 | 36918 | ||||||
| Pp | 338 | estExt_Genewise1.C_2030018 | DNA_binding_protein_ | ppDBP2a-2 | 203 | f | 490994 | 499247 | ||||||
| Pt | 121 | jgi|Poptr1_1|241019|gw1.XIII.1268.1 | DNA_binding_protein_ | ptDBP1a-1 | 13 | r | 2118438 | 2121376 | NOP5NT 1; NOSIC 1; | |||||
| Pt | 121 | jgi|Poptr1_1|294922|gw1.70.375.1 | DNA_binding_protein_ | ptDBP1a-2 | 70 | f | 890920 | 893863 | NOP5NT 1; NOSIC 1; | |||||
| Pt | 333 | jgi|Poptr1_1|821339|estExt_fgenesh4_pg.C_LG_IX0842 | RNA_binding_2 | ptRBD2b-1 | 9 | r | 5476280 | 5478802 | ||||||
| Pt | 333 | jgi|Poptr1_1|829713|estExt_fgenesh4_pm.C_LG_I0815 | RNA_binding_2 | ptRBD2b-2 | 1 | f | 20647888 | 20651319 | ||||||
| Pt | 338 | jgi|Poptr1_1|234880|gw1.XI.2860.1 | DNA_binding_protein_ | ptDBP2a-1 | 11 | r | 6899685 | 6909355 | ||||||
| Pt | 338 | jgi|Poptr1_1|753194|fgenesh4_pg.C_LG_I002797 | DNA_binding_protein_ | ptDBP2a-2 | 1 | r | 28710981 | 28722128 | ||||||
| Pt | 341 | jgi|Poptr1_1|836278|estExt_fgenesh4_pm.C_280159 | RNA_binding_1 | ptRBD1b | 28 | r | 3542726 | 3547672 | ||||||
| Pt | 401 | jgi|Poptr1_1|570176|eugene3.00120829 | Chloroplast | RNA_Binding_31 | ptCP31a-1 | 12 | f | 10806695 | 10809618 | |||||
| Pt | 401 | jgi|Poptr1_1|835181|estExt_fgenesh4_pm.C_LG_XV0240 | Chloroplast | RNA_Binding_31 | ptCP31a-2 | 15 | f | 6484764 | 6487337 | |||||
| Pt | 1204 | jgi|Poptr1_1|819404|estExt_fgenesh4_pg.C_LG_VI1354 | Similar_to_RNA_bindi | ptRBD5 | 6 | r | 13793091 | 13795131 | ||||||
| Sb | 121 | Sb01g035410.2 | DNA_binding_protein_ | sbDBP1a-1 | 1 | f | 58958580 | 58962760 | NOP5NT 1; NOSIC 1; | |||||
| Sb | 121 | Sb03g044260.1 | DNA_binding_protein_ | sbDBP1a-2 | 3 | f | 71609254 | 71613201 | NOP5NT 1; NOSIC 1; | |||||
| Sb | 333 | Sb03g005050.1 | RNA_binding_2 | sbRBD2b | 3 | r | 5254712 | 5256714 | ||||||
| Sb | 338 | Sb09g030580.1 | DNA_binding_protein_ | sbDBP2a | 9 | f | 59130763 | 59147065 | ||||||
| Sb | 341 | Sb02g006770.1 | RNA_binding_1 | sbRBD1b | 2 | f | 8645912 | 8654651 | ||||||
| Sb | 401 | Sb02g011330.1 | Chloroplast | RNA_Binding_31 | sbCP31a | 2 | r | 18828382 | 18831456 | |||||
| Sb | 1204 | Sb06g016070.1 | Similar_to_RNA_bindi | sbRBD5 | 6 | f | 44509820 | 44512588 | ||||||
| Vv | 121 | GSVIVT00031075001 | DNA_binding_protein_ | vvDBP1a | 14 | r | 5463368 | 5469345 | NOP5NT 1; NOSIC 1; | |||||
| Vv | 333 | GSVIVT00029111001 | RNA_binding_2 | vvRBD2b | 12 | f | 9088346 | 9100053 | ||||||
| Vv | 338 | GSVIVT00028385001 | DNA_binding_protein_ | vvDBP2a | 10 | f | 4320144 | 4370448 | ||||||
| Vv | 341 | GSVIVT00033645001 | RNA_binding_1 | vvRBD1b | 8 | f | 727223 | 736003 | ||||||
| Vv | 401 | GSVIVT00015937001 | Chloroplast | RNA_Binding_31 | vvCP31a-1 | 17 | f | 11564576 | 11567938 | |||||
| Vv | 401 | GSVIVT00020623001 | Chloroplast | RNA_Binding_31 | vvCP31a-2 | 14 | f | 15923128 | 15927552 | |||||
| Vv | 1204 | GSVIVT00021561001 | Similar_to_RNA_bindi | vvRBD5 | 8 | r | 15857180 | 15859871 | ||||||
| Zm | 121 | GRMZM2G070831_T01 | DNA_binding_protein_ | zmDBP1a-1 | 2 | f | 222740921 | 222743823 | NOP5NT 1; NOSIC 1; | |||||
| Zm | 121 | GRMZM2G071873_T01 | DNA_binding_protein_ | zmDBP1a-2 | 1 | r | 172061040 | 172063717 | NOP5NT 1; NOSIC 1; | |||||
| Zm | 121 | GRMZM2G124576_T01 | DNA_binding_protein_ | zmDBP1a-3 | 1 | r | 59736115 | 59740257 | NOP5NT 1; NOSIC 1; | |||||
| Zm | 121 | GRMZM2G124576_T02 | DNA_binding_protein_ | zmDBP1a-3 | 1 | r | 59736126 | 59740257 | NOP5NT 1; NOSIC 1; | |||||
| Zm | 121 | GRMZM2G125148_T01 | DNA_binding_protein_ | zmDBP1a-4 | 9 | f | 125048481 | 125053008 | NOP5NT 1; NOSIC 1; | |||||
| Zm | 121 | GRMZM2G125148_T02 | DNA_binding_protein_ | zmDBP1a-4 | 9 | f | 125048481` | 125052642 | NOP5NT 1; NOSIC 1; | |||||
| Zm | 121 | GRMZM2G125148_T03 | DNA_binding_protein_ | zmDBP1a-4 | 9 | f | 125048481 | 125052642 | NOP5NT 1; NOSIC 1; | |||||
| Zm | 121 | GRMZM2G125148_T04 | DNA_binding_protein_ | zmDBP1a-4 | 9 | f | 125048433 | 125052639 | NOP5NT 1; NOSIC 1; | |||||
| Zm | 333 | GRMZM2G119088_T01 | RNA_binding_2 | zmRBD2b | 3 | r | 14134469 | 14136285 | ||||||
| Zm | 338 | GRMZM2G402002_T01 | DNA_binding_protein_ | zmDBP2a | 6 | r | 167526854 | 167553204 | ||||||
| Zm | 338 | GRMZM2G402002_T02 | DNA_binding_protein_ | zmDBP2a | 6 | r | 167544100 | 167553255 | ||||||
| Zm | 341 | GRMZM2G063643_T01 | RNA_binding_1 | zmRBD1b-1 | 2 | f | 156054448 | 156059718 | ||||||
| Zm | 341 | GRMZM2G063643_T02 | RNA_binding_1 | zmRBD1b-1 | 2 | f | 156054448 | 156059393 | ||||||
| Zm | 341 | GRMZM2G472052_T01 | RNA_binding_1 | zmRBD1b-2 | 7 | r | 21079617 | 21090030 | ||||||
| Zm | 341 | GRMZM2G472052_T02 | RNA_binding_1 | zmRBD1b-2 | 7 | r | 21084064 | 21090068 | ||||||
| Zm | 401 | GRMZM2G011129_T01 | Chloroplast | RNA_Binding_31 | zmCP31a | 7 | r | 48611872 | 48615389 | |||||
| Zm | 1204 | GRMZM2G113513_T01 | Similar_to_RNA_bindi | zmRBD5 | 2 | f | 56155676 | 56158286 |