2.8 Other known splicing factors
Species |
CIWOG |
Gene |
hHomologs |
SeHomologs |
Gene Name |
Barta Name |
Chr |
str |
from |
to |
Txn |
Domains |
Transcripts |
|
| At | 13 | AT1G32490.1 | Prp2 | atPrp2-1a | 1 | r | 11742054 | 11749775 | DEAD 1; Helicase_C | |||||
| At | 13 | AT2G35340.1 | Prp2 | atPrp2-1b | 2 | f | 14872320 | 14879739 | DEAD 1; Helicase_C | |||||
| At | 13 | AT4G16680.1 | Prp2 | atPrp2-2 | 4 | r | 9388071 | 9390774 | DEAD 1; Helicase_C | |||||
| At | 293 | AT3G23900.1 | SRm300 | atSRM300like | 3 | r | 8631606 | 8636045 | RRM 1; Filamin/ABP28 | |||||
| At | 296 | AT1G20920.1 | Prp5 | atPrp5-1b | 1 | f | 7285114 | 7289778 | DEAD 1; Helicase_C | |||||
| At | 296 | AT3G09620.1 | Prp5 | atPrp5-1a | 3 | r | 2949152 | 2952205 | DEAD 1; Helicase_C | |||||
| At | 478 | AT1G07350.1 | hTra-2/SFRS10 | atTra/SFRS1 | 1 | r | 2257425 | 2260101 | RRM 1 | |||||
| At | 754 | AT2G47330.1 | Prp5 | atPrp5-2 | 2 | r | 19428897 | 19431720 | DEAD 1;Helicase_C | |||||
| At | 979 | AT4G31770.1 | hDbr1 | dbr1 | atDbr1 | 4 | r | 15370066 | 15372596 | Metallophos 1;DBRI | ||||
| Gm | 13 | Glyma01g04790.1 | Prp2 | gmPrp2 | 1 | r | 4376287 | 4379431 | DEAD 1; Helicase_C | |||||
| Gm | 13 | Glyma01g04790.2 | Prp2 | gmPrp2 | 1 | r | 4376888 | 4379431 | DEAD 1; Helicase_C | |||||
| Gm | 13 | Glyma06g21830.1 | Prp2 | gmPrp2 | 6 | f | 18405451 | 18424266 | DEAD 1; Helicase_C | |||||
| Gm | 13 | Glyma08g00230.1 | Prp2 | gmPrp2-1a | 8 | f | 16507 | 29865 | DEAD 1; Helicase_C | |||||
| Gm | 13 | Glyma08g00230.2 | Prp2 | gmPrp2-1a | 8 | f | 16507 | 30738 | DEAD 1; Helicase_C | |||||
| Gm | 13 | Glyma10g01410.1 | Prp2 | gmPrp2-1a | 10 | r | 1035853 | 1038369 | DEAD 1; Helicase_C | |||||
| Gm | 13 | Glyma13g41740.1 | Prp2 | gmPrp2-1a | 13 | f | 41944763 | 41954427 | DEAD 1; Helicase_C | |||||
| Gm | 13 | Glyma15g03660.1 | Prp2 | gmPrp2-1a | 15 | r | 2565029 | 2575253 | DEAD 1; Helicase_C | |||||
| Gm | 13 | Glyma15g03660.2 | Prp2 | gmPrp2-1a | 15 | r | 2565029 | 2575196 | DEAD 1; Helicase_C | |||||
| Gm | 13 | Glyma15g33060.1 | Prp2 | gmPrp2-1a | 15 | r | 36683734 | 36703006 | DEAD 1; Helicase_C | |||||
| Gm | 293 | Glyma05g28570.1 | SRm300 | gmSRM300like-1 | 5 | r | 34395438 | 34400116 | RRM 1; Filamin/ABP28 | |||||
| Gm | 293 | Glyma05g28570.2 | SRm300 | gmSRM300like-1 | 5 | r | 34394332 | 34400116 | RRM 1; Filamin/ABP28 | |||||
| Gm | 293 | Glyma08g11590.1 | SRm300 | gmSRM300like-2 | 8 | r | 8452598 | 8457644 | RRM 1; Filamin/ABP28 | |||||
| Gm | 296 | Glyma01g43960.1 | Prp5 | gmPrp5-1a-1 | 1 | r | 54800718 | 54805730 | DEAD 1; Helicase_C | |||||
| Gm | 296 | Glyma01g43960.2 | Prp5 | gmPrp5-1a-1 | 1 | r | 54800718 | 54805730 | DEAD 1; Helicase_C | |||||
| Gm | 296 | Glyma11g01430.1 | Prp5 | gmPrp5-1a-2 | 11 | r | 852095 | 856568 | DEAD 1; Helicase_C | |||||
| Gm | 478 | Glyma08g45200.1 | hTra-2/SFRS10 | gmTra/SFRS1 | 8 | f | 44617256 | 44619944 | RRM 1 | |||||
| Gm | 754 | Glyma03g37920.1 | Prp5 | gmPrp5-1 | 3 | f | 44366492 | 44371447 | DEAD 1;Helicase_C | |||||
| Gm | 754 | Glyma19g40510.1 | Prp5 | gmPrp5-2 | 19 | f | 46889178 | 46893238 | DEAD 1;Helicase_C | |||||
| Gm | 979 | Glyma04g06310.1 | hDbr1 | dbr1 | gmDbr1 | 4 | r | 4836563 | 4840447 | Metallophos 1;DBRI | ||||
| Lj | 13 | LjSGA_019513.1 | Prp2 | ljPrp2-1a | DEAD 1; Helicase_C | |||||||||
| Lj | 293 | LjSGA_015470.1 | SRm300 | ljSRM300like | RRM 1; Filamin/ABP28 | |||||||||
| Lj | 478 | LjB08M07.70.nc | hTra-2/SFRS10 | ljTra/SFRS1 | RRM 1 | |||||||||
| Lj | 979 | chr1.CM0133.1540.nc | hDbr1 | dbr1 | ljDbr1 | 1 | r | 22143903 | 22147994 | Metallophos 1;DBRI | ||||
| Mt | 13 | IMGA|AC146307_21.2 | Prp2 | mtPrp2 | 6 | f | 10334241 | 10338886 | DEAD 1; Helicase_C | |||||
| Mt | 13 | IMGA|CR962133_21.2 | Prp2 | mtPrp2-1a | 5 | f | 25942987 | 25944866 | DEAD 1; Helicase_C | |||||
| Mt | 296 | IMGA|AC192707_12.1 | Prp5 | mtPrp5-1a | 2 | f | 826658 | 831955 | DEAD 1; Helicase_C | |||||
| Mt | 754 | IMGA|AC155099_15.2 | Prp5 | mtPrp5 | 7 | r | 29497525 | 29501958 | DEAD 1;Helicase_C | |||||
| Os | 13 | LOC_Os05g32370.1 | Prp2 | osPrp2 | 5 | r | 18809801 | 18813383 | DEAD 1; Helicase_C | |||||
| Os | 13 | LOC_Os07g32430.1 | Prp2 | osPrp2-1a | 7 | r | 19289890 | 19298101 | DEAD 1; Helicase_C | |||||
| Os | 13 | LOC_Os08g24760.1 | Prp2 | osPrp2 | 8 | r | 14978687 | 14989614 | DEAD 1; Helicase_C | |||||
| Os | 293 | LOC_Os01g01150.1 | SRm300 | osSRM300like | 1 | f | 71775 | 76699 | RRM 1; Filamin/ABP28 | |||||
| Os | 293 | LOC_Os01g01150.2 | SRm300 | osSRM300like | 1 | f | 71775 | 77702 | RRM 1; Filamin/ABP28 | |||||
| Os | 293 | LOC_Os01g01150.3 | SRm300 | osSRM300like | 1 | f | 71775 | 78938 | RRM 1; Filamin/ABP28 | |||||
| Os | 296 | LOC_Os08g05810.1 | Prp5 | osPrp5-1a-1 | 8 | r | 3112975 | 3116299 | DEAD 1; Helicase_C | |||||
| Os | 296 | LOC_Os08g06344.1 | Prp5 | osPrp5-1a-2 | 8 | r | 3512831 | 3517779 | DEAD 1; Helicase_C | |||||
| Os | 296 | LOC_Os08g06344.2 | Prp5 | osPrp5-1a-2 | 8 | r | 3512838 | 3517735 | DEAD 1; Helicase_C | |||||
| Os | 296 | LOC_Os08g06344.3 | Prp5 | osPrp5-1a-2 | 8 | r | 3512923 | 3517735 | DEAD 1; Helicase_C | |||||
| Os | 478 | LOC_Os03g15890.1 | hTra-2/SFRS10 | osTra/SFRS1 | 3 | r | 8766456 | 8769486 | RRM 1 | |||||
| Os | 478 | LOC_Os03g15890.2 | hTra-2/SFRS10 | osTra/SFRS1 | 3 | r | 8766456 | 8769474 | RRM 1 | |||||
| Os | 754 | LOC_Os03g19530.1 | Prp5 | osPrp5 | 3 | f | 10982928 | 10987117 | DEAD 1;Helicase_C | |||||
| Os | 979 | LOC_Os03g51540.1 | hDbr1 | dbr1 | osDbr1 | 3 | f | 29473359 | 29477934 | Metallophos 1;DBRI | ||||
| Pp | 13 | estExt_fgenesh1_pg.C_3310026 | Prp2 | ppPrp2-1a | 331 | f | 358628 | 365754 | DEAD 1; Helicase_C | |||||
| Pp | 13 | estExt_gwp_gw1.C_180152 | Prp2 | ppPrp2-1a | 18 | f | 2082679 | 2086845 | DEAD 1; Helicase_C | |||||
| Pp | 13 | estExt_gwp_gw1.C_430071 | Prp2 | ppPrp2-1a | 43 | f | 420112 | 428868 | DEAD 1; Helicase_C | |||||
| Pp | 13 | estExt_Genewise1.C_180147 | Prp2 | ppPrp2-1a | 18 | f | 2019778 | 2023944 | DEAD 1; Helicase_C | |||||
| Pp | 13 | estExt_Genewise1.C_4270010 | Prp2 | ptPrp2-1a | 427 | r | 45465 | 49721 | DEAD 1; Helicase_C | |||||
| Pp | 293 | estExt_fgenesh1_pg.C_180039 | SRm300 | ppSRM300like-1 | 18 | f | 288582 | 296204 | RRM 1; Filamin/ABP28 | |||||
| Pp | 293 | fgenesh1_pg.scaffold_8000015 | SRm300 | ppSRM300like-2 | 8 | r | 115341 | 120140 | RRM 1; Filamin/ABP28 | |||||
| Pp | 296 | e_gw1.307.20.1 | Prp5 | ppPrp5-1a | 307 | r | 316428 | 320683 | DEAD 1; Helicase_C | |||||
| Pp | 478 | e_gw1.234.40.1 | hTra-2/SFRS10 | ppTra/SFRS1-1 | 234 | f | 40746 | 42621 | RRM 1 | |||||
| Pp | 478 | gw1.3.275.1 | hTra-2/SFRS10 | ppTra/SFRS1-2 | 3 | r | 1100441 | 1100797 | RRM 1 | |||||
| Pp | 478 | gw1.27.117.1 | hTra-2/SFRS10 | ppTra/SFRS1-3 | 27 | r | 962774 | 963742 | RRM 1 | |||||
| Pp | 478 | gw1.21.172.1 | hTra-2/SFRS10 | ppTra/SFRS1-4 | 21 | r | 1415637 | 1417797 | RRM 1 | |||||
| Pp | 754 | e_gw1.257.4.1 | Prp5 | ppPrp5 | 257 | f | 385636 | 389501 | DEAD 1;Helicase_C | |||||
| Pp | 979 | e_gw1.101.51.1 | hDbr1 | dbr1 | ppDbr1 | 101 | f | 725681 | 727583 | Metallophos 1;DBRI | ||||
| Pt | 13 | jgi|Poptr1_1|250837|gw1.XV.273.1 | Prp2 | ptPrp2 | 15 | f | 588737 | 607440 | DEAD 1; Helicase_C | |||||
| Pt | 13 | jgi|Poptr1_1|659337|grail3.0154005801 | Prp2 | ptPrp2-1a | 10 | r | 15638571 | 15640070 | DEAD 1; Helicase_C | |||||
| Pt | 293 | jgi|Poptr1_1|752830|fgenesh4_pg.C_LG_I002433 | SRm300 | ptSRM300like-1 | 1 | r | 25062486 | 25069242 | RRM 1; Filamin/ABP28 | |||||
| Pt | 293 | jgi|Poptr1_1|827541|estExt_fgenesh4_pg.C_880014 | SRm300 | ptSRM300like-2 | 88 | f | 161579 | 165721 | RRM 1; Filamin/ABP28 | |||||
| Pt | 296 | jgi|Poptr1_1|411630|gw1.II.2965.1 | Prp5 | ptPrp5-1a-1 | 2 | r | 209205 | 212546 | DEAD 1; Helicase_C | |||||
| Pt | 296 | jgi|Poptr1_1|715705|estExt_Genewise1_v1.C_LG_V2253 | Prp5 | ptPrp5-1a-2 | 5 | f | 17779741 | 17782428 | DEAD 1; Helicase_C | |||||
| Pt | 478 | jgi|Poptr1_1|833248|estExt_fgenesh4_pm.C_LG_IX0568 | hTra-2/SFRS10 | ptTra/SFRS1 | 9 | r | 8010728 | 8012506 | RRM 1 | |||||
| Pt | 754 | jgi|Poptr1_1|552542|eugene3.00021857 | Prp5 | ptPrp5 | 2 | r | 16194122 | 16198576 | DEAD 1;Helicase_C | |||||
| Pt | 979 | jgi|Poptr1_1|825797|estExt_fgenesh4_pg.C_LG_XVIII0523 | hDbr1 | dbr1 | ptDbr1 | Metallophos 1;DBRI | ||||||||
| Sb | 13 | Sb02g034295.1 | Prp2 | sbPrp2-1a | 2 | r | 68774419 | 68783436 | DEAD 1; Helicase_C | |||||
| Sb | 293 | Sb03g009130.1 | SRm300 | sbSRM300like | 3 | r | 9901414 | 9906932 | RRM 1; Filamin/ABP28 | |||||
| Sb | 296 | Sb07g004090.1 | Prp5 | sbPrp5-1a-1 | 7 | r | 5136009 | 5140142 | DEAD 1; Helicase_C | |||||
| Sb | 296 | Sb07g002100.1 | Prp5 | sbPrp5-1a-2 | 7 | r | 2239909 | 2242749 | DEAD 1; Helicase_C | |||||
| Sb | 478 | Sb01g040100.1 | hTra-2/SFRS10 | sbTra/SFRS1 | 1 | f | 63488908 | 63492310 | Sm 1 | |||||
| Sb | 754 | Sb01g037410.1 | Prp5 | sbPrp5 | 1 | r | 60973109 | 60977586 | DEAD 1;Helicase_C | |||||
| Sb | 979 | Sb01g009610.1 | hDbr1 | dbr1 | sbDbr1 | 1 | r | 8379575 | 8383728 | Metallophos 1;DBRI | ||||
| Vv | 13 | GSVIVT00016254001 | Prp2 | vvPrp2-1a | 17 | f | 7754539 | 7761763 | DEAD 1; Helicase_C | |||||
| Vv | 13 | GSVIVT00035046001 | Prp2 | vvPrp2-1a | 0 | r | 2873421 | 2906709 | DEAD 1; Helicase_C | |||||
| Vv | 293 | GSVIVT00023519001 | SRm300 | vvSRM300like | 0 | r | 111043312 | 111063669 | RRM 1; Filamin/ABP28 | |||||
| Vv | 296 | GSVIVT00036305001 | Prp5 | vvPrp5-1a | 3 | f | 2970908 | 2974482 | DEAD 1; Helicase_C | |||||
| Vv | 478 | GSVIVT00002571001 | hTra-2/SFRS10 | vvTra/SFRS1-1 | 2 | r | 57234 | 60678 | RRM 1 | |||||
| Vv | 478 | GSVIVT00024167001 | hTra-2/SFRS10 | vvTra/SFRS1-2 | 6 | f | 6768115 | 6770166 | RRM 1 | |||||
| Vv | 754 | GSVIVT00028128001 | Prp5 | vvPrp5 | 7 | f | 4454730 | 4460498 | DEAD 1;Helicase_C | |||||
| Vv | 979 | GSVIVT00015037001 | hDbr1 | dbr1 | vvDbr1 | 18 | f | 6573333 | 6585818 | Metallophos 1;DBRI | ||||
| Zm | 13 | GRMZM2G121776_T01 | Prp2 | zmPrp2-1a | 4 | f | 61866268 | 61876923 | DEAD 1; Helicase_C | |||||
| Zm | 13 | GRMZM2G121776_T02 | Prp2 | zmPrp2-1a | 4 | f | 61866576 | 61876497 | DEAD 1; Helicase_C | |||||
| Zm | 13 | GRMZM2G480809_T01 | Prp2 | zmPrp2-1a | 2 | r | 199383471 | 199398383 | DEAD 1; Helicase_C | |||||
| Zm | 293 | GRMZM2G056145_T01 | SRm300 | zmSRM300like | 8 | f | 6757379 | 6765664 | RRM 1; Filamin/ABP28 | |||||
| Zm | 293 | GRMZM2G132936_T02 | SRm300 | zmSRM300like | 3 | r | 32618974 | 32626820 | RRM 1; Filamin/ABP28 | |||||
| Zm | 293 | GRMZM2G132936_T03 | SRm300 | zmSRM300like | 3 | r | 32618987 | 32626820 | RRM 1; Filamin/ABP28 | |||||
| Zm | 296 | GRMZM2G030659_T01 | Prp5 | zmPrp5-1a | 10 | f | 77258598 | 77263234 | DEAD 1; Helicase_C | |||||
| Zm | 478 | GRMZM2G073567_T01 | hTra-2/SFRS10 | zmTra/SFRS1 | 9 | f | 136146481 | 136150081 | RRM 1 | |||||
| Zm | 754 | GRMZM2G090869_T01 | Prp5 | zmPrp5-1 | 9 | r | 130698962 | 130703604 | DEAD 1;Helicase_C | |||||
| Zm | 754 | GRMZM2G121871_T01 | Prp5 | zmPrp5-2 | 1 | f | 49825645 | 49830097 | DEAD 1;Helicase_C | |||||
| Zm | 979 | GRMZM2G461145_T01 | hDbr1 | dbr1 | zmDbr1 | 5 | r | 9587184 | 9591736 | Metallophos 1;DBRI |