SRGD

Database

Species Comparisons

Gene Groups

Novel Splicing-related Proteins

Specific Proteins

ATP binding / ATP-dependent helicase/ RNA binding

ATP-dependent RNA helicase

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
14	AT2G45810 AT3G61240 AT4G00660	jgi\|Phypa1_1\|131244\|e_gw1.87.104.1 jgi\|Phypa1_1\|79636\|fgenesh1_pg.scaffold_80000086	GRMZM2G086116 GRMZM2G129007	LOC_Os02g42860 LOC_Os04g45040 LOC_Os10g35990	jgi\|Sorbi1\|4742507\|estExt_Genewise1.C_chr_13759 jgi\|Sorbi1\|4742512\|estExt_Genewise1.C_chr_13764	Glyma03g01500 Glyma03g01530 Glyma07g07920 Glyma07g07950 Glyma09g39710	IMGA\|AC123899_5.2 IMGA\|AC123899_6.2 IMGA\|AC123899_9.2		GSVIVP00000382001 GSVIVP00026802001	jgi\|Poptr1_1\|731050\|estExt_Genewise1_v1.C_LG_XIV1157 jgi\|Poptr1_1\|755273\|fgenesh4_pg.C_LG_II001453
99	AT5G60990	jgi\|Phypa1_1\|178010\|estExt_gwp_gw1.C_280025	GRMZM2G075027	LOC_Os03g46610	jgi\|Sorbi1\|5050333\|Sb01g049070	Glyma03g01710	IMGA\|AC146793_7.2 IMGA\|AC174377_7.2		GSVIVP00013119001	jgi\|Poptr1_1\|218296\|gw1.VII.2601.1 jgi\|Poptr1_1\|832135\|estExt_fgenesh4_pm.C_LG_VI0759
294						Glyma06g21800			GSVIVP00016255001

ATP-dependent RNA or DNA unwinding

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
239		jgi\|Phypa1_1\|141731\|e_gw1.182.41.1 jgi\|Phypa1_1\|220890\|estExt_Genewise1.C_2010071	GRMZM2G319509	LOC_Os02g50560	jgi\|Sorbi1\|5055589\|Sb04g028500			chr2.CM0028.190.nc

DEAD box RNA helicase

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
6	AT2G42520 AT3G58510 AT3G58570	jgi\|Phypa1_1\|107568\|estExt_fgenesh1_pm.C_1730006 jgi\|Phypa1_1\|1580\|gw1.243.16.1 jgi\|Phypa1_1\|168022\|estExt_fgenesh1_pg.C_1630086 jgi\|Phypa1_1\|21374\|gw1.48.53.1	GRMZM2G035807 GRMZM2G092327 GRMZM2G403636	LOC_Os03g59050 LOC_Os07g10250 LOC_Os11g38670	jgi\|Sorbi1\|4791178\|e_gw1.2.1995.1 jgi\|Sorbi1\|4867397\|estExt_Genewise1Plus.C_chr_10926	Glyma02g26630 Glyma05g28770 Glyma08g11920 Glyma09g15940 Glyma11g36440 Glyma13g23720 Glyma17g12460 Glyma18g00370	IMGA\|AC146760_21.2 IMGA\|AC157983_23.2 IMGA\|AC166093_19.2 IMGA\|AC202469_2.1 IMGA\|AC202570_8.1		GSVIVP00003716001 GSVIVP00016872001 GSVIVP00024762001 GSVIVP00025435001	jgi\|Poptr1_1\|177956\|gw1.I.6556.1 jgi\|Poptr1_1\|576413\|eugene3.00160548 jgi\|Poptr1_1\|712751\|estExt_Genewise1_v1.C_LG_III2630 jgi\|Poptr1_1\|717593\|estExt_Genewise1_v1.C_LG_VI2083
163	AT3G09720	jgi\|Phypa1_1\|41894\|gw1.32.167.1	GRMZM2G083580	LOC_Os07g45360	jgi\|Sorbi1\|5000947\|estExt_fgenesh1_pg.C_chr_23875	Glyma03g33590 Glyma19g36300	IMGA\|AC124963_17.2	chr1.CM0033.480.nc	GSVIVP00023153001	jgi\|Poptr1_1\|581044\|eugene3.01250042
200	AT3G46960	jgi\|Phypa1_1\|227295\|estExt_Genewise1.C_4060018	GRMZM2G024882	LOC_Os02g06500	jgi\|Sorbi1\|4812333\|e_gw1.4.871.1	Glyma18g07510		LjB08M07.30.nc LjB08M07.50.nc	GSVIVP00024171001	jgi\|Poptr1_1\|723138\|estExt_Genewise1_v1.C_LG_IX3922
202	AT3G02065	jgi\|Phypa1_1\|163933\|estExt_fgenesh1_pg.C_620070	GRMZM2G085587	LOC_Os02g10770	jgi\|Sorbi1\|5037772\|Sb04g006980	Glyma02g07540 Glyma16g26580
221	AT1G16280	jgi\|Phypa1_1\|220567\|estExt_Genewise1.C_1970079		LOC_Os07g43980	jgi\|Sorbi1\|4791650\|e_gw1.2.20252.1	Glyma08g17620 Glyma15g41500	IMGA\|AC138448_23.2		GSVIVP00002064001	jgi\|Poptr1_1\|420684\|gw1.VIII.2112.1
224		jgi\|Phypa1_1\|135358\|e_gw1.119.19.1 jgi\|Phypa1_1\|135382\|e_gw1.119.18.1 jgi\|Phypa1_1\|157210\|e_gw1.728.2.1 jgi\|Phypa1_1\|173651\|estExt_fgenesh1_pg.C_5270001				Glyma11g31380			GSVIVP00023931001	jgi\|Poptr1_1\|729255\|estExt_Genewise1_v1.C_LG_XIII0287 jgi\|Poptr1_1\|826310\|estExt_fgenesh4_pg.C_LG_XIX0940
299			GRMZM2G357923				IMGA\|AC152158_16.2		GSVIVP00028045001
308			GRMZM2G091652	LOC_Os06g40020	jgi\|Sorbi1\|5061888\|Sb10g023440
311			GRMZM2G028366	LOC_Os02g12840	jgi\|Sorbi1\|4814184\|e_gw1.4.2415.1
380	AT5G65900								GSVIVP00017610001

Heterogeneour nuclear ribonucleoprotein 27C

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
357									GSVIVP00037180001	jgi\|Poptr1_1\|664446\|grail3.0061020502

KH domain containing protein

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
179			GRMZM2G120973 GRMZM2G131839	LOC_Os10g35220					GSVIVP00038217001	jgi\|Poptr1_1\|580795\|eugene3.01230085
204	AT1G51580			LOC_Os09g32300		Glyma04g09300 Glyma06g09460 Glyma08g23710	IMGA\|AC135800_18.2 IMGA\|AC157757_20.2	chr1.CM0233.590.nc		jgi\|Poptr1_1\|228446\|gw1.X.3143.1 jgi\|Poptr1_1\|551726\|eugene3.00021041
225						Glyma03g31670 Glyma10g03910 Glyma19g34470		LjSGA_010787.1	GSVIVP00023873001
249			GRMZM2G085582	LOC_Os05g40290	jgi\|Sorbi1\|4895220\|estExt_Genewise1Plus.C_chr_96735
258			GRMZM2G130095	LOC_Os12g40560	jgi\|Sorbi1\|4844900\|e_gw1.8.14277.1			chr1.CM0375.250.nd
267			AC218972.3_FGP007 GRMZM2G093006	LOC_Os01g60260	jgi\|Sorbi1\|4880452\|estExt_Genewise1Plus.C_chr_39554
278	AT5G46190					Glyma05g27340 Glyma08g10330				jgi\|Poptr1_1\|197384\|gw1.IV.2473.1
288						Glyma11g31530 Glyma18g05680	IMGA\|AC147002_39.2
293									GSVIVP00036937001	jgi\|Poptr1_1\|226375\|gw1.X.1072.1 jgi\|Poptr1_1\|419577\|gw1.VIII.1005.1
305			GRMZM2G108677	LOC_Os03g60110	jgi\|Sorbi1\|4867266\|estExt_Genewise1Plus.C_chr_10739
319	AT1G14170
323										jgi\|Poptr1_1\|774084\|fgenesh4_pg.C_LG_XIII000538 jgi\|Poptr1_1\|809716\|fgenesh4_pm.C_LG_XIX000281
356						Glyma02g15850
367			GRMZM2G162992
372			GRMZM2G075039		jgi\|Sorbi1\|5029184\|Sb01g022040

LSM domain containing protein

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
307			GRMZM2G092429	LOC_Os04g36810	jgi\|Sorbi1\|4760968\|estExt_Genewise1.C_chr_65346

mRNA 3-UTR binding protein

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
178		jgi\|Phypa1_1\|130845\|e_gw1.84.182.1 jgi\|Phypa1_1\|13586\|gw1.84.45.1	GRMZM2G166355	LOC_Os08g40880	jgi\|Sorbi1\|5059068\|Sb07g027050	Glyma06g08200	IMGA\|CT868696_6.2	chr1.LjT36G06.30.nc	GSVIVP00032377001	jgi\|Poptr1_1\|583200\|eugene3.01470085 jgi\|Poptr1_1\|837528\|estExt_fgenesh4_pm.C_1930016

PEP (PEPPER); RNA binding / nucleic acid binding

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
157	AT4G26000		GRMZM2G119146 GRMZM2G180909	LOC_Os10g41440	jgi\|Sorbi1\|5049049\|Sb01g028800	Glyma09g06750 Glyma13g00510 Glyma17g06640	IMGA\|AC151665_25.2	chr4.CM0244.150.nd	GSVIVP00006796001	jgi\|Poptr1_1\|277196\|gw1.193.46.1

PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent helicase/ DNA binding / RNA binding

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
59	AT3G22310 AT3G22330		GRMZM2G107984 GRMZM2G136644	LOC_Os07g05050 LOC_Os12g41715	jgi\|Sorbi1\|5050535\|Sb02g002790 jgi\|Sorbi1\|5059806\|Sb08g021180	Glyma02g45030 Glyma08g41510 Glyma14g03760 Glyma18g14670	IMGA\|CT485797_31.2	LjB12O06.130.nc	GSVIVP00018949001	jgi\|Poptr1_1\|255017\|gw1.XVI.956.1 jgi\|Poptr1_1\|818968\|estExt_fgenesh4_pg.C_LG_VI0209

Polyadenylate-binding protein

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
274			GRMZM2G055018 GRMZM2G310362	LOC_Os06g38980	jgi\|Sorbi1\|5061860\|Sb10g022900

PRH75; ATP-depedent helicase/ DEAD/H-box RNA helicase binding

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
141	AT5G62190	jgi\|Phypa1_1\|127777\|e_gw1.67.40.1	GRMZM2G149520 GRMZM2G164956	LOC_Os09g34910	jgi\|Sorbi1\|147838\|estExt_fgenesh1_kg.C_chr_20232	Glyma10g38680 Glyma20g29060	IMGA\|AC149304_13.2		GSVIVP00038510001	jgi\|Poptr1_1\|806661\|fgenesh4_pm.C_LG_XII000481 jgi\|Poptr1_1\|824889\|estExt_fgenesh4_pg.C_LG_XV1043

RNA helicase

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
206	AT1G31970	jgi\|Phypa1_1\|205380\|estExt_Genewise1.C_270066	GRMZM2G076484	LOC_Os07g20580	jgi\|Sorbi1\|4999550\|estExt_fgenesh1_pg.C_chr_21093	Glyma01g01390 Glyma09g34390	IMGA\|CU459038_20.1		GSVIVP00003606001	jgi\|Poptr1_1\|712352\|estExt_Genewise1_v1.C_LG_III1770
290						Glyma06g22000	IMGA\|CU182773_12.1			jgi\|Poptr1_1\|783071\|fgenesh4_pg.C_scaffold_82000026

RNA processing and the regulation of transcription

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
247		jgi\|Phypa1_1\|231029\|fgenesh2_pg.scaffold_119000024				Glyma05g03110 Glyma17g13750	IMGA\|AC135505_41.2
322										jgi\|Poptr1_1\|808062\|fgenesh4_pm.C_LG_XV000273 jgi\|Poptr1_1\|834350\|estExt_fgenesh4_pm.C_LG_XII0344

RNA binding protein

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
286							IMGA\|AC148482_23.2 IMGA\|AC148526_13.2	chr6.LjT16B20.40.nc
325										jgi\|Poptr1_1\|254726\|gw1.XVI.665.1 jgi\|Poptr1_1\|818953\|estExt_fgenesh4_pg.C_LG_VI0143
310			GRMZM2G043150		jgi\|Sorbi1\|5059239\|Sb08g001290

RNA-binding protein AKIP1-like

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
359									GSVIVP00019425001	jgi\|Poptr1_1\|558592\|eugene3.00050207
360									GSVIVP00017425001	jgi\|Poptr1_1\|751987\|fgenesh4_pg.C_LG_I001590

RNA-binding protein cp29

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
262	AT3G55920					Glyma11g35280 Glyma18g03120			GSVIVP00029291001	jgi\|Poptr1_1\|659517\|grail3.0022013501

RRM containing protein

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
46	AT1G20880 AT1G76460		GRMZM2G042195 GRMZM2G092493	LOC_Os02g48340 LOC_Os06g41790	jgi\|Sorbi1\|5055689\|Sb04g030020 jgi\|Sorbi1\|5061944\|Sb10g024450	Glyma04g01590 Glyma06g01670	IMGA\|AC131026_44.2	chr1.CM0150.310.nc	GSVIVP00002935001	jgi\|Poptr1_1\|550726\|eugene3.00020041 jgi\|Poptr1_1\|652263\|grail3.0002083101
223						Glyma02g15810 Glyma07g32660		LjT18N19.10.nd		jgi\|Poptr1_1\|235363\|gw1.XI.3343.1 jgi\|Poptr1_1\|713853\|estExt_Genewise1_v1.C_LG_IV2768
250			GRMZM2G052569	LOC_Os04g54440	jgi\|Sorbi1\|5057963\|Sb06g030090
259			GRMZM2G127510 GRMZM2G169615	LOC_Os07g33330
264	AT2G37220		GRMZM2G042683	LOC_Os03g25960	jgi\|Sorbi1\|4870636\|estExt_Genewise1Plus.C_chr_18851				GSVIVP00023204001
273			GRMZM2G069678	LOC_Os04g37690	jgi\|Sorbi1\|4756660\|estExt_Genewise1.C_chr_46466 jgi\|Sorbi1\|4825687\|e_gw1.6.13460.1
276			GRMZM2G012628	LOC_Os04g53440	jgi\|Sorbi1\|4833149\|e_gw1.6.16770.1
301			GRMZM2G158835	LOC_Os07g43810	jgi\|Sorbi1\|147976\|estExt_fgenesh1_kg.C_chr_20370
302			GRMZM2G158462	LOC_Os08g44290	jgi\|Sorbi1\|4891353\|estExt_Genewise1Plus.C_chr_77129
303			GRMZM2G153526						GSVIVP00020992001
306			GRMZM2G107745	LOC_Os03g59710	jgi\|Sorbi1\|5047868\|Sb01g003790
326										jgi\|Poptr1_1\|243429\|gw1.XIV.172.1 jgi\|Poptr1_1\|412701\|gw1.II.4036.1
332				LOC_Os07g46820
335				LOC_Os04g02870
339				LOC_Os01g64770
355						Glyma03g01920
358				LOC_Os07g08320					GSVIVP00027062001
364			GRMZM2G180639
369			GRMZM2G094039 GRMZM2G366935
370			GRMZM2G094039
371			GRMZM2G079974 GRMZM2G127510
375			GRMZM2G056145		jgi\|Sorbi1\|5052840\|Sb03g009130
393	AT1G54080
376			GRMZM2G052926 GRMZM2G070113
378			GRMZM2G037226

Splicing factor

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
284				LOC_Os01g06290
321					jgi\|Sorbi1\|3999143\|gw1.6.1450.1 jgi\|Sorbi1\|4988617\|fgenesh1_pg.C_chr_8000390
336				LOC_Os03g49430	jgi\|Sorbi1\|4741749\|estExt_Genewise1.C_chr_12224

Splicing factor 1 (SF1) K homology RNA-binding domain (KH)

Splicing factor U2AF

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
177			GRMZM2G177229	LOC_Os09g31482	jgi\|Sorbi1\|5000148\|estExt_fgenesh1_pg.C_chr_22528

Splicing factor U2af 38 kDa subunit

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
292						Glyma03g34840 Glyma19g37530		chr1.CM0378.200.nd

Splicing factor U2af large subunit B

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
324										jgi\|Poptr1_1\|647996\|grail3.0046020601 jgi\|Poptr1_1\|670968\|grail3.0124001701

U2 small nuclear ribonucleoprotein A

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
337				LOC_Os02g13990

WD domain pre-mRNA prcessing

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
289				LOC_Os05g16660 LOC_Os08g21660		Glyma09g36870

WD40 domain, pre-mRNA processing

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
354						Glyma06g04670

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
41	AT5G26742	jgi\|Phypa1_1\|113584\|e_gw1.7.51.1 jgi\|Phypa1_1\|125455\|e_gw1.54.23.1 jgi\|Phypa1_1\|30666\|gw1.163.50.1 jgi\|Phypa1_1\|50380\|gw1.7.306.1	GRMZM2G163072 GRMZM2G415491	LOC_Os03g61220	jgi\|Sorbi1\|4774896\|e_gw1.1.172.1	Glyma03g38550 Glyma10g28100 Glyma19g41150 Glyma20g22120	IMGA\|AC149038_14.2 IMGA\|AC166743_6.2	LjB06P23.40.nc chr5.CM0048.280.nc	GSVIVP00022481001	jgi\|Poptr1_1\|267999\|gw1.131.1.1 jgi\|Poptr1_1\|268020\|gw1.131.22.1
218	AT1G77030	jgi\|Phypa1_1\|30506\|gw1.409.31.1		LOC_Os08g32090	jgi\|Sorbi1\|5058723\|Sb07g020310	Glyma03g00350 Glyma16g34790	IMGA\|AC171618_38.2		GSVIVP00014339001	jgi\|Poptr1_1\|204718\|gw1.V.119.1

CIWOG	At	Pp	Zm	Os	Sb	Gm	Mt	Lj	Vv	Pt
89	AT4G26480 AT5G56140	jgi\|Phypa1_1\|108452\|estExt_fgenesh1_pm.C_2690009 jgi\|Phypa1_1\|183867\|estExt_gwp_gw1.C_680211 jgi\|Phypa1_1\|222121\|estExt_Genewise1.C_2260018	GRMZM2G029029 GRMZM2G092182	LOC_Os02g49080	jgi\|Sorbi1\|4757394\|estExt_Genewise1.C_chr_47755	Glyma04g12370 Glyma06g48070	IMGA\|CT963080_2.2	chr3.CM0047.410.nc	GSVIVP00033451001	jgi\|Poptr1_1\|642696\|grail3.0051017601 jgi\|Poptr1_1\|672144\|grail3.0140002001
256						Glyma02g40440 Glyma14g38730	IMGA\|AC149600_29.2 IMGA\|CU459032_31.1

Database

10 Plant Species

Species Comparisons

Gene Groups

Novel Splicing-related Proteins

Specific Proteins

ATP binding / ATP-dependent helicase/ RNA binding

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

ATP-dependent RNA helicase

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

ATP-dependent RNA or DNA unwinding

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

DEAD box RNA helicase

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

Heterogeneour nuclear ribonucleoprotein 27C

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

KH domain containing protein

CIWOG

At

Pp

Zm

Os

Sb

Gm

Mt

Lj

Vv

Pt

LSM domain containing protein

CIWOG