PlantGDB
Genome Browsers
Related Links
Genome Browsers - All Sources and Data - current genome versions are shown in dark background/text
| Genome Browser |
Species |
Genome Type |
DB ver |
Genome Source |
Genome Segments |
Gene Models |
yrGATE Models |
GDB Version |
Transcript Alignments |
Protein Alignments |
| EST |
cDNA |
PUT |
Species |
Count |
| AtGDB | Arabidopsis thaliana | Chromosome | 5 | TAIR 9 | 5 |
37761 |
23 |
AtGDB171 |
0 |
0 |
|
OsPEP |
|
| BdGDB | Brachypodium distachyon | Chromosome | 2 | Phytozome 5.0 | 6 |
32255 |
87 |
BdGDB179 |
0 |
0 |
|
TAIR9 Mt3.0 |
|
| BrGDB | Brassica rapa | BAC | 1 | GenBank | 52 |
131 |
3 |
BRGDB154 |
0 |
0 |
|
AtPEP |
|
| BrGDB | Brassica rapa | | 1 | BRAD | |
|
3 |
BrGDB187 |
0 |
0 |
|
|
|
| CpGDB | Carica papaya | Scaffold | 2 | Version1.181 | 5901 |
27792 |
0 |
CpGDB181 |
0 |
0 |
|
TAIR9 Mt3.0 |
|
| CrGDB | Chlamydomonas reinhardtii | Scaffold | 1 | JGI Cr153 | 18 |
16036 |
0 |
CrGDB179 |
0 |
0 |
|
TAIR9 Mt3.0 |
|
| CsGDB | Cucumis sativus | Scaffold | 1 | Version1.179 | 4219 |
32775 |
0 |
CsGDB179 |
0 |
0 |
|
TAIR9 Mt3.0 |
|
| GmGDB | Glycine max | Scaffold | 1 | Glyma0 | 3423 |
62442 |
9 |
GMGDB163 |
0 |
0 |
|
AtPEP MtPEP |
|
| GmGDB | Glycine max | Chromosome | 1 | Glyma1.170 | 20 |
75333 |
9 |
GMGDB170 |
0 |
0 |
|
AtPEP MtPEP |
|
| GhGDB | Gossypium hirsutum | BAC | 1 | GenBank | 150 |
187 |
0 |
GHGDB |
0 |
0 |
|
AtPEP |
|
| HvGDB | Hordeum vulgare | BAC | 1 | GenBank | 59 |
328 |
0 |
HVGDB157 |
0 |
0 |
|
OsPEP |
|
| LjGDB | Lotus japonicus | Chromosome | 1 | Kazuza.org | 7 |
22650 |
0 |
LjGDB171 |
0 |
0 |
|
AtPEP |
|
| MeGDB | Manihot esculenta | BAC/Scaffold | 1 | JGI cassava_v1.1 | 6081 |
47443 |
0 |
MeGDB179 |
0 |
0 |
|
TAIR9 Mt3.0 |
|
| MtGDB | Medicago truncatula | Chromosome | 1 | Phytozome 8.0 | |
|
0 |
MtGDB187 |
0 |
0 |
|
|
|
| MtGDB | Medicago truncatula | Chromosome | 3 | medicago.org Mt3.0 | 9 |
53423 |
1 |
MtGDB179 |
0 |
0 |
|
TAIR9 Glyma1 |
|
| MgGDB | Mimulus guttatus | BAC/Scaffold | 1 | JGI Mimulus_guttatus.v1 | 2216 |
27501 |
0 |
MgGDB179 |
0 |
0 |
|
TAIR9 Mt3.0 |
|
| OsGDB | Oryza sativa | Chromosome | 4 | Release 6.1/v171 | 12 |
68464 |
19 |
OsGDB171 |
0 |
0 |
|
AtPEP |
|
| OsGDB | Oryza sativa | Chromosome | 5 | Phytozome 8.0 | |
|
0 |
OsGDB187 |
0 |
0 |
|
|
|
| PpGDB | Physcomitrella patens | Scaffold | 1 | Phypa1.1 | 2106 |
|
1 |
PPGDB163 |
0 |
0 |
|
AtPEP OsPEP |
|
| PpGDB | Physcomitrella patens | Scaffold | 1 | Version1.183 | 2106 |
38354 |
1 |
PpGDB183 |
0 |
0 |
|
TAIR9 JGI v6.0 Osativa_120 |
|
| PtGDB | Populus trichocarpa | Chromosome | 3 | Ptr v2.0 | 20 |
45778 |
0 |
PtGDB179 |
0 |
0 |
|
TAIR9 Mt3.0 |
|
| PpGDB | Prunus persica | Scaffold | 1 | Version1.179 | 202 |
28702 |
0 |
PeGDB179 |
0 |
0 |
|
TAIR9 Mt3.0 |
|
| RcGDB | Ricinus communis | Scaffold | 1 | TIGR/JCVI v0.1 | 5441 |
31221 |
0 |
RcGDB179 |
0 |
0 |
|
TAIR9 Mt3.0 |
|
| SmGDB | Selaginella moellendorffii | Scaffold | 1 | Version183/Phytozome v7.0 | 768 |
22285 |
0 |
SmGDB183 |
0 |
0 |
|
Mt3.0 |
|
| SiGDB | Setaria italica | BAC/Scaffold | 1 | Phytozome 6.0 | 341 |
38038 |
0 |
SiGDB179 |
0 |
0 |
|
JGI Osativa_120 JGI Sbicolor_79 |
|
| SlGDB | Solanum lycopersicum | BAC | 1 | GenBank | 423 |
0 |
0 |
SLGDB160 |
0 |
0 |
|
AtPEP |
|
| StGDB | Solanum tuberosum | Scaffold | 1 | PGSC | |
|
0 |
StGDB187 |
0 |
0 |
|
|
|
| SbGDB | Sorghum bicolor | Chromosome | 1 | Sbi1 | 10 |
29448 |
5 |
SbGDB181 |
0 |
0 |
|
OSpep |
|
| VvGDB | Vitis vinifera | Chromosome | 2 | genoscope 12x | 33 |
26346 |
0 |
VvGDB179 |
0 |
0 |
|
TAIR9 Mt3.0 |
|
| VcGDB | Volvox carteri | Scaffold | 1 | Phytozome 8.0 | |
|
0 |
VcGDB187 |
0 |
0 |
|
|
|
| ZmGDB | Zea mays | BAC | 1 | GenBank | 35649 |
1512 |
137 |
ZMUPDATE |
0 |
0 |
|
OsPEP SbPEP |
|
| ZmGDB | Zea mays | Chromosome | 2 | maizesequence.org RefGen_v2 | 11 |
136522 |
212 |
ZmGDB181 |
0 |
0 |
|
JGI v6.0 Osativa_120 JGI v6.0 Sbicolor_79 |
|
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