Genome Browsers 

High quality spliced alignments to transcripts and proteins, gene models and community annotation.

For plant species with ongoing genome sequencing projects, PlantGDB provides genome browsers to display current gene structure models and transcript evidence from spliced alignments of EST and cDNA sequences. The browsers also link community annotation tools to contribute refined or novel annotations. Other features we display, if applicable, include matched GSS contigs, similar proteins, as well as microarray probes.

Genome Browser Species Name Type Data Info Search BLAST Community Annotations Protein Spliced-Alignments
AtGDB Arabidopsis thaliana (Thale Cress) Chromosome Information Search BLAST Annotations Rice
BdGDB Brachypodium distachyon (Brachypodium) Chromosome Information Search BLAST Annotations Rice, Sorghum
BrGDB Brassica rapa (Mustard) BAC Information Search BLAST Annotations Arabidopsis
CpGDB Carica papaya (Papaya) Scaffold Information Search BLAST Annotations Arabidopsis
GhGDB Gossypium hirsutum (Cotton) BAC Information Search BLAST Annotations Arabidopsis
GmGDB (Chromosome) Glycine max (Soybean) Chromosome Information Search BLAST Annotations Arabidopsis, Medicago
GmGDB (BAC/Scaffold) Glycine max (Soybean) BAC/Scaffold Information Search BLAST Annotations Arabidopsis, Medicago
HvGDB Hordeum vulgare (Barley) BAC Information Search BLAST Annotations Rice
LjGDB Lotus japonicus (Lotus) Chromosome Information Search BLAST Annotations Arabidopsis
MtGDB Medicago truncatula (Barrel medic) Chromosome Information Search BLAST Annotations Arabidopsis
OsGDB Oryza sativa (Rice) Chromosome Information Search BLAST Annotations Arabidopsis
PpGDB Physcomitrella patens (Moss) Scaffold Information Search BLAST Annotations Arabidopsis, Rice
PtGDB Populus trichocarpa (Poplar) Chromosome Information Search BLAST Annotations Arabidopsis
SbGDB Sorghum bicolor (Sorghum) Chromosome Information Search BLAST Annotations Rice
SlGDB Solanum lycopersicum (Tomato) BAC Information Search BLAST Annotations Arabidopsis
TaGDB Triticum aestivum (Wheat) BAC Information Search BLAST Annotations Arabidopsis
VvGDB Vitis vinifera (Wine Grape) Chromosome Information Search BLAST Annotations Arabidopsis
ZmGDB (Chromosome) Zea mays (maize) Chromosome Information Search BLAST Annotations Rice, Sorghum
ZmGDB
(BAC)
Zea mays (maize) BAC Information Search BLAST Annotations Rice, Sorghum

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