Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
358661763Hevea_brasiliensisESTBacteria
358656565Hevea_brasiliensisESTBacteria
358675195Hevea_brasiliensisESTBacteria
358659735Hevea_brasiliensisESTBacteria
358654656Hevea_brasiliensisESTBacteria
358655275Hevea_brasiliensisESTBacteria
358654977Hevea_brasiliensisESTBacteria
29054625Hevea_brasiliensisESTBacteria
24934966Hevea_brasiliensisESTBacteria

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