Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)



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Sequence ID Organism Sequence Type Contamination Type
73772509Catharanthus_roseusESTVector
56628469Catharanthus_roseusESTVector
56628480Catharanthus_roseusESTVector
56628481Catharanthus_roseusESTVector
56628482Catharanthus_roseusESTVector
73944365Catharanthus_roseusESTVector
73944380Catharanthus_roseusESTVector
73944395Catharanthus_roseusESTVector
73944417Catharanthus_roseusESTVector
73944418Catharanthus_roseusESTVector
73944419Catharanthus_roseusESTVector
73944420Catharanthus_roseusESTVector
116655310Catharanthus_roseusESTVector
164552046Catharanthus_roseusESTVector
164552029Catharanthus_roseusESTVector
164552139Catharanthus_roseusESTVector
164552150Catharanthus_roseusESTVector
164552153Catharanthus_roseusESTVector
164552562Catharanthus_roseusESTVector
164553288Catharanthus_roseusESTVector
164552838Catharanthus_roseusESTVector
164552898Catharanthus_roseusESTVector
164553357Catharanthus_roseusESTVector
164552910Catharanthus_roseusESTVector
164552985Catharanthus_roseusESTVector
164553698Catharanthus_roseusESTVector
164553721Catharanthus_roseusESTVector
164553725Catharanthus_roseusESTVector
164553948Catharanthus_roseusESTVector
164553993Catharanthus_roseusESTVector
164554139Catharanthus_roseusESTVector
164553569Catharanthus_roseusESTVector
164553572Catharanthus_roseusESTVector
164553605Catharanthus_roseusESTVector
164553639Catharanthus_roseusESTVector
164553844Catharanthus_roseusESTVector
164553849Catharanthus_roseusESTVector
164554909Catharanthus_roseusESTVector
164555045Catharanthus_roseusESTVector
164554623Catharanthus_roseusESTVector
164554721Catharanthus_roseusESTVector
164554770Catharanthus_roseusESTVector
164554777Catharanthus_roseusESTVector
164555102Catharanthus_roseusESTVector
164554547Catharanthus_roseusESTVector
164554656Catharanthus_roseusESTVector
164554738Catharanthus_roseusESTVector
164554750Catharanthus_roseusESTVector
164554752Catharanthus_roseusESTVector
164555643Catharanthus_roseusESTVector
164555769Catharanthus_roseusESTVector
164555217Catharanthus_roseusESTVector
164555283Catharanthus_roseusESTVector
164555337Catharanthus_roseusESTVector
164555351Catharanthus_roseusESTVector
164555388Catharanthus_roseusESTVector
164555404Catharanthus_roseusESTVector
164555165Catharanthus_roseusESTVector
164555211Catharanthus_roseusESTVector
164555246Catharanthus_roseusESTVector
164555714Catharanthus_roseusESTVector
164555957Catharanthus_roseusESTVector
164556230Catharanthus_roseusESTVector
164556281Catharanthus_roseusESTVector
164556344Catharanthus_roseusESTVector
164556427Catharanthus_roseusESTVector
164556446Catharanthus_roseusESTVector
164556508Catharanthus_roseusESTVector
164556527Catharanthus_roseusESTVector
164556528Catharanthus_roseusESTVector
164556641Catharanthus_roseusESTVector
164556024Catharanthus_roseusESTVector
164556052Catharanthus_roseusESTVector
164556170Catharanthus_roseusESTVector
164556177Catharanthus_roseusESTVector
164556200Catharanthus_roseusESTVector
164556307Catharanthus_roseusESTVector
164556393Catharanthus_roseusESTVector
164556410Catharanthus_roseusESTVector
164556501Catharanthus_roseusESTVector
164556863Catharanthus_roseusESTVector
164557531Catharanthus_roseusESTVector
164557575Catharanthus_roseusESTVector
164557776Catharanthus_roseusESTVector
164557939Catharanthus_roseusESTVector
164557662Catharanthus_roseusESTVector
164558222Catharanthus_roseusESTVector
164557475Catharanthus_roseusESTVector
164557478Catharanthus_roseusESTVector
164557483Catharanthus_roseusESTVector
164558828Catharanthus_roseusESTVector
164558889Catharanthus_roseusESTVector
164559053Catharanthus_roseusESTVector
164559125Catharanthus_roseusESTVector
164559131Catharanthus_roseusESTVector
164559231Catharanthus_roseusESTVector
164559481Catharanthus_roseusESTVector
164559845Catharanthus_roseusESTVector
164559406Catharanthus_roseusESTVector
164559703Catharanthus_roseusESTVector

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