Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
328971556Casuarina_glaucaESTVector
328971611Casuarina_glaucaESTVector
328971614Casuarina_glaucaESTVector
328971633Casuarina_glaucaESTVector
328971657Casuarina_glaucaESTVector
328965146Casuarina_glaucaESTVector
328966491Casuarina_glaucaESTVector
328968775Casuarina_glaucaESTVector
328968861Casuarina_glaucaESTVector
328968882Casuarina_glaucaESTVector
328968888Casuarina_glaucaESTVector
328968903Casuarina_glaucaESTVector
328968913Casuarina_glaucaESTVector
328968979Casuarina_glaucaESTVector
328968998Casuarina_glaucaESTVector
328976432Casuarina_glaucaESTVector
328976814Casuarina_glaucaESTVector
328969528Casuarina_glaucaESTVector
328969592Casuarina_glaucaESTVector
328969688Casuarina_glaucaESTVector
328969757Casuarina_glaucaESTVector
328984473Casuarina_glaucaESTVector
328983823Casuarina_glaucaESTVector
109965434Casuarina_glaucaESTVector
109965661Casuarina_glaucaESTVector
109965800Casuarina_glaucaESTVector
109965921Casuarina_glaucaESTVector
109965968Casuarina_glaucaESTVector
109966090Casuarina_glaucaESTVector
109966392Casuarina_glaucaESTVector
109967070Casuarina_glaucaESTVector
109967222Casuarina_glaucaESTVector
109967246Casuarina_glaucaESTVector
109967285Casuarina_glaucaESTVector
109967368Casuarina_glaucaESTVector
109967512Casuarina_glaucaESTVector
109967532Casuarina_glaucaESTVector
109967534Casuarina_glaucaESTVector
109967535Casuarina_glaucaESTVector
109967545Casuarina_glaucaESTVector
109967561Casuarina_glaucaESTVector
109967601Casuarina_glaucaESTVector
109967620Casuarina_glaucaESTVector
109967752Casuarina_glaucaESTVector
109967762Casuarina_glaucaESTVector
109967764Casuarina_glaucaESTVector
109967777Casuarina_glaucaESTVector
109967836Casuarina_glaucaESTVector
109967868Casuarina_glaucaESTVector
109967914Casuarina_glaucaESTVector
109967956Casuarina_glaucaESTVector
109967991Casuarina_glaucaESTVector
109968064Casuarina_glaucaESTVector
109968132Casuarina_glaucaESTVector
109968138Casuarina_glaucaESTVector
109968147Casuarina_glaucaESTVector
109968151Casuarina_glaucaESTVector
109968170Casuarina_glaucaESTVector
109968198Casuarina_glaucaESTVector
109968199Casuarina_glaucaESTVector
109968244Casuarina_glaucaESTVector
109968290Casuarina_glaucaESTVector
109968292Casuarina_glaucaESTVector
109968371Casuarina_glaucaESTVector
109968499Casuarina_glaucaESTVector
109968512Casuarina_glaucaESTVector
109968516Casuarina_glaucaESTVector
109968551Casuarina_glaucaESTVector
109968581Casuarina_glaucaESTVector
109968639Casuarina_glaucaESTVector
109968698Casuarina_glaucaESTVector
109968705Casuarina_glaucaESTVector
109968708Casuarina_glaucaESTVector
109968760Casuarina_glaucaESTVector
109968829Casuarina_glaucaESTVector
109968909Casuarina_glaucaESTVector
109969013Casuarina_glaucaESTVector

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