Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
237776444Castanea_mollissimaESTVector
237778269Castanea_mollissimaESTVector
237778494Castanea_mollissimaESTVector
237773540Castanea_mollissimaESTVector
237773650Castanea_mollissimaESTVector
237773775Castanea_mollissimaESTVector
237773900Castanea_mollissimaESTVector
237771357Castanea_mollissimaESTVector
237772621Castanea_mollissimaESTVector
237773301Castanea_mollissimaESTVector
237773059Castanea_mollissimaESTVector
237775244Castanea_mollissimaESTVector
237771465Castanea_mollissimaESTVector
237779239Castanea_mollissimaESTVector
237775643Castanea_mollissimaESTVector

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