Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
283774761Caragana_jubataESTVector
283774769Caragana_jubataESTVector
283774790Caragana_jubataESTVector
283774812Caragana_jubataESTVector
283774815Caragana_jubataESTVector
283774850Caragana_jubataESTVector
283774871Caragana_jubataESTVector
283775038Caragana_jubataESTVector
171768625Caragana_jubataESTVector
171768626Caragana_jubataESTVector
171768650Caragana_jubataESTVector
171768651Caragana_jubataESTVector
171768653Caragana_jubataESTVector
171768683Caragana_jubataESTVector
171768775Caragana_jubataESTVector
171768793Caragana_jubataESTVector
171768516Caragana_jubataESTVector
171768535Caragana_jubataESTVector
171768536Caragana_jubataESTVector
171768540Caragana_jubataESTVector
171768542Caragana_jubataESTVector
171768551Caragana_jubataESTVector
171768588Caragana_jubataESTVector

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