Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
269924769Capsicum_chinenseESTVector
269924770Capsicum_chinenseESTVector
269924771Capsicum_chinenseESTVector
269924772Capsicum_chinenseESTVector
269924773Capsicum_chinenseESTVector
269924776Capsicum_chinenseESTVector
269924777Capsicum_chinenseESTVector
269924778Capsicum_chinenseESTVector
269924779Capsicum_chinenseESTVector
269924780Capsicum_chinenseESTVector
269924781Capsicum_chinenseESTVector
269924782Capsicum_chinenseESTVector
269924784Capsicum_chinenseESTVector
269924785Capsicum_chinenseESTVector
269924786Capsicum_chinenseESTVector
269924787Capsicum_chinenseESTVector
269924788Capsicum_chinenseESTVector
269924789Capsicum_chinenseESTVector
269924790Capsicum_chinenseESTVector
269924791Capsicum_chinenseESTVector
269924792Capsicum_chinenseESTVector
269924793Capsicum_chinenseESTVector
269924794Capsicum_chinenseESTVector
269924795Capsicum_chinenseESTVector
269924796Capsicum_chinenseESTVector
269924797Capsicum_chinenseESTVector
269924800Capsicum_chinenseESTVector
269924801Capsicum_chinenseESTVector
269924802Capsicum_chinenseESTVector
269924804Capsicum_chinenseESTVector
269924807Capsicum_chinenseESTVector
269924808Capsicum_chinenseESTVector
269924811Capsicum_chinenseESTVector
269924812Capsicum_chinenseESTVector
28197046Capsicum_chinenseESTVector
28197048Capsicum_chinenseESTVector
28197049Capsicum_chinenseESTVector
28197051Capsicum_chinenseESTVector
28197053Capsicum_chinenseESTVector
28197054Capsicum_chinenseESTVector
28197055Capsicum_chinenseESTVector
28197058Capsicum_chinenseESTVector
28197059Capsicum_chinenseESTVector
28197061Capsicum_chinenseESTVector
28197063Capsicum_chinenseESTVector
28197065Capsicum_chinenseESTVector
28197069Capsicum_chinenseESTVector
28197073Capsicum_chinenseESTVector
28197074Capsicum_chinenseESTVector
28197076Capsicum_chinenseESTVector
28197077Capsicum_chinenseESTVector
28197078Capsicum_chinenseESTVector
28197083Capsicum_chinenseESTVector
28197084Capsicum_chinenseESTVector
28197086Capsicum_chinenseESTVector
28197087Capsicum_chinenseESTVector
28197090Capsicum_chinenseESTVector
28197091Capsicum_chinenseESTVector
28197092Capsicum_chinenseESTVector
28197094Capsicum_chinenseESTVector

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