Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)



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Sequence ID Organism Sequence Type Contamination Type
55700353Capsicum_annuumESTVector
55700358Capsicum_annuumESTVector
55700360Capsicum_annuumESTVector
55700366Capsicum_annuumESTVector
191640242Capsicum_annuumESTVector
191640276Capsicum_annuumESTVector
191642304Capsicum_annuumESTVector
191642393Capsicum_annuumESTVector
191640175Capsicum_annuumESTVector
191639896Capsicum_annuumESTVector
191640151Capsicum_annuumESTVector
191641933Capsicum_annuumESTVector
51296730Capsicum_annuumESTVector
51296822Capsicum_annuumESTVector
51296839Capsicum_annuumESTVector
51296866Capsicum_annuumESTVector
51296896Capsicum_annuumESTVector
51297062Capsicum_annuumESTVector
51297254Capsicum_annuumESTVector
51297351Capsicum_annuumESTVector
51297491Capsicum_annuumESTVector
51297660Capsicum_annuumESTVector
51297675Capsicum_annuumESTVector
51297744Capsicum_annuumESTVector
51297870Capsicum_annuumESTVector
51298027Capsicum_annuumESTVector
51298077Capsicum_annuumESTVector
51298100Capsicum_annuumESTVector
51298113Capsicum_annuumESTVector
51298324Capsicum_annuumESTVector
51298339Capsicum_annuumESTVector
51298345Capsicum_annuumESTVector
51298482Capsicum_annuumESTVector
51298503Capsicum_annuumESTVector
51298546Capsicum_annuumESTVector
51298647Capsicum_annuumESTVector
51298766Capsicum_annuumESTVector
51298813Capsicum_annuumESTVector
51298845Capsicum_annuumESTVector
51298858Capsicum_annuumESTVector
51298962Capsicum_annuumESTVector
51299035Capsicum_annuumESTVector
51299207Capsicum_annuumESTVector
51300021Capsicum_annuumESTVector
51300042Capsicum_annuumESTVector
51300367Capsicum_annuumESTVector
51300390Capsicum_annuumESTVector
51300400Capsicum_annuumESTVector
51300513Capsicum_annuumESTVector
51300532Capsicum_annuumESTVector
51300627Capsicum_annuumESTVector
51300853Capsicum_annuumESTVector
51300861Capsicum_annuumESTVector
51300917Capsicum_annuumESTVector
51300995Capsicum_annuumESTVector
51301073Capsicum_annuumESTVector
51301109Capsicum_annuumESTVector
51301149Capsicum_annuumESTVector
51301178Capsicum_annuumESTVector
51301386Capsicum_annuumESTVector
51301412Capsicum_annuumESTVector
51301508Capsicum_annuumESTVector
51301647Capsicum_annuumESTVector
51301668Capsicum_annuumESTVector
51301708Capsicum_annuumESTVector
51301731Capsicum_annuumESTVector
51301748Capsicum_annuumESTVector
51301827Capsicum_annuumESTVector
51301860Capsicum_annuumESTVector
51301899Capsicum_annuumESTVector
51301925Capsicum_annuumESTVector
51301962Capsicum_annuumESTVector
51301976Capsicum_annuumESTVector
51302022Capsicum_annuumESTVector
51302061Capsicum_annuumESTVector
51302126Capsicum_annuumESTVector
51302230Capsicum_annuumESTVector
51302262Capsicum_annuumESTVector
51302307Capsicum_annuumESTVector
51302320Capsicum_annuumESTVector
51302403Capsicum_annuumESTVector
51302509Capsicum_annuumESTVector
51302603Capsicum_annuumESTVector
51302736Capsicum_annuumESTVector
224661445Capsicum_annuumESTVector
224633641Capsicum_annuumESTVector
224663215Capsicum_annuumESTVector
224696747Capsicum_annuumESTVector
224696751Capsicum_annuumESTVector
224680028Capsicum_annuumESTVector
224618107Capsicum_annuumESTVector
224619321Capsicum_annuumESTVector
224639505Capsicum_annuumESTVector
224641619Capsicum_annuumESTVector
224647135Capsicum_annuumESTVector
224630882Capsicum_annuumESTVector
224631530Capsicum_annuumESTVector
224653546Capsicum_annuumESTVector
224655049Capsicum_annuumESTVector
224619343Capsicum_annuumESTVector

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