Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
256674142Cajanus_scarabaeoidesESTVector
256674145Cajanus_scarabaeoidesESTVector
256674146Cajanus_scarabaeoidesESTVector
256674147Cajanus_scarabaeoidesESTVector
256674148Cajanus_scarabaeoidesESTVector
256674151Cajanus_scarabaeoidesESTVector
256674153Cajanus_scarabaeoidesESTVector
256674156Cajanus_scarabaeoidesESTVector
256674157Cajanus_scarabaeoidesESTVector
256674160Cajanus_scarabaeoidesESTVector
256674162Cajanus_scarabaeoidesESTVector
256674165Cajanus_scarabaeoidesESTVector
256674171Cajanus_scarabaeoidesESTVector
256674172Cajanus_scarabaeoidesESTVector
256674174Cajanus_scarabaeoidesESTVector
256674180Cajanus_scarabaeoidesESTVector
256674182Cajanus_scarabaeoidesESTVector
256674189Cajanus_scarabaeoidesESTVector
256674195Cajanus_scarabaeoidesESTVector
256674197Cajanus_scarabaeoidesESTVector
256674199Cajanus_scarabaeoidesESTVector
256674200Cajanus_scarabaeoidesESTVector
256674202Cajanus_scarabaeoidesESTVector

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!