Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
308515563Cabomba_aquaticaESTVector
308515661Cabomba_aquaticaESTVector
308516198Cabomba_aquaticaESTVector
308516495Cabomba_aquaticaESTVector
308516498Cabomba_aquaticaESTVector
308516620Cabomba_aquaticaESTVector
308513655Cabomba_aquaticaESTVector
308514180Cabomba_aquaticaESTVector
308514878Cabomba_aquaticaESTVector
308515945Cabomba_aquaticaESTVector

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