Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)



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Sequence ID Organism Sequence Type Contamination Type
308625965Brassica_oleracea_var__acephalaESTVector
308714608Brassica_oleracea_var__acephalaESTVector
308724301Brassica_oleracea_var__acephalaESTVector
308655378Brassica_oleracea_var__acephalaESTVector
308653559Brassica_oleracea_var__acephalaESTVector
308627591Brassica_oleracea_var__acephalaESTVector
308675802Brassica_oleracea_var__acephalaESTVector
308624562Brassica_oleracea_var__acephalaESTVector
308723736Brassica_oleracea_var__acephalaESTVector
308671118Brassica_oleracea_var__acephalaESTVector
308624689Brassica_oleracea_var__acephalaESTVector
308624703Brassica_oleracea_var__acephalaESTVector
308724448Brassica_oleracea_var__acephalaESTVector
308724451Brassica_oleracea_var__acephalaESTVector
308624752Brassica_oleracea_var__acephalaESTVector
308703118Brassica_oleracea_var__acephalaESTVector
308724475Brassica_oleracea_var__acephalaESTVector
308705048Brassica_oleracea_var__acephalaESTVector
308705057Brassica_oleracea_var__acephalaESTVector
308651908Brassica_oleracea_var__acephalaESTVector
308705103Brassica_oleracea_var__acephalaESTVector
308705142Brassica_oleracea_var__acephalaESTVector
308712492Brassica_oleracea_var__acephalaESTVector
308712573Brassica_oleracea_var__acephalaESTVector
308653644Brassica_oleracea_var__acephalaESTVector
308709272Brassica_oleracea_var__acephalaESTVector
308716219Brassica_oleracea_var__acephalaESTVector
308653815Brassica_oleracea_var__acephalaESTVector
308717246Brassica_oleracea_var__acephalaESTVector
308703201Brassica_oleracea_var__acephalaESTVector
308703233Brassica_oleracea_var__acephalaESTVector
308671365Brassica_oleracea_var__acephalaESTVector
308624994Brassica_oleracea_var__acephalaESTVector
308650332Brassica_oleracea_var__acephalaESTVector
308703490Brassica_oleracea_var__acephalaESTVector
308651970Brassica_oleracea_var__acephalaESTVector
308673148Brassica_oleracea_var__acephalaESTVector
308724770Brassica_oleracea_var__acephalaESTVector
308704073Brassica_oleracea_var__acephalaESTVector
308679646Brassica_oleracea_var__acephalaESTVector
308634943Brassica_oleracea_var__acephalaESTVector
308712895Brassica_oleracea_var__acephalaESTVector
308671479Brassica_oleracea_var__acephalaESTVector
308703549Brassica_oleracea_var__acephalaESTVector
308703550Brassica_oleracea_var__acephalaESTVector
308703587Brassica_oleracea_var__acephalaESTVector
308671541Brassica_oleracea_var__acephalaESTVector
308678025Brassica_oleracea_var__acephalaESTVector
308656526Brassica_oleracea_var__acephalaESTVector
308656020Brassica_oleracea_var__acephalaESTVector
308656043Brassica_oleracea_var__acephalaESTVector
308710288Brassica_oleracea_var__acephalaESTVector
308724353Brassica_oleracea_var__acephalaESTVector
308678110Brassica_oleracea_var__acephalaESTVector
308713156Brassica_oleracea_var__acephalaESTVector
308678971Brassica_oleracea_var__acephalaESTVector
308635798Brassica_oleracea_var__acephalaESTVector
308703755Brassica_oleracea_var__acephalaESTVector
308669717Brassica_oleracea_var__acephalaESTVector
308705666Brassica_oleracea_var__acephalaESTVector
308713978Brassica_oleracea_var__acephalaESTVector
308678819Brassica_oleracea_var__acephalaESTVector
308678192Brassica_oleracea_var__acephalaESTVector
308674168Brassica_oleracea_var__acephalaESTVector
308651248Brassica_oleracea_var__acephalaESTVector
308710403Brassica_oleracea_var__acephalaESTVector
308704374Brassica_oleracea_var__acephalaESTVector
308678850Brassica_oleracea_var__acephalaESTVector
308724044Brassica_oleracea_var__acephalaESTVector
308654691Brassica_oleracea_var__acephalaESTVector
308710873Brassica_oleracea_var__acephalaESTVector
308705763Brassica_oleracea_var__acephalaESTVector
308627079Brassica_oleracea_var__acephalaESTVector
308634117Brassica_oleracea_var__acephalaESTVector
308674282Brassica_oleracea_var__acephalaESTVector
308704466Brassica_oleracea_var__acephalaESTVector
308635202Brassica_oleracea_var__acephalaESTVector
308724220Brassica_oleracea_var__acephalaESTVector
308634269Brassica_oleracea_var__acephalaESTVector
308717674Brassica_oleracea_var__acephalaESTVector
308710906Brassica_oleracea_var__acephalaESTVector
308723223Brassica_oleracea_var__acephalaESTVector
308723224Brassica_oleracea_var__acephalaESTVector
308636139Brassica_oleracea_var__acephalaESTVector
308711130Brassica_oleracea_var__acephalaESTVector
308623205Brassica_oleracea_var__acephalaESTVector
308672673Brassica_oleracea_var__acephalaESTVector
308650665Brassica_oleracea_var__acephalaESTVector
308706010Brassica_oleracea_var__acephalaESTVector
308714155Brassica_oleracea_var__acephalaESTVector
308631247Brassica_oleracea_var__acephalaESTVector
308705503Brassica_oleracea_var__acephalaESTVector
308705569Brassica_oleracea_var__acephalaESTVector
308673412Brassica_oleracea_var__acephalaESTVector
308636996Brassica_oleracea_var__acephalaESTVector
308718521Brassica_oleracea_var__acephalaESTVector
308678499Brassica_oleracea_var__acephalaESTVector
308638614Brassica_oleracea_var__acephalaESTVector
308711351Brassica_oleracea_var__acephalaESTVector
308654967Brassica_oleracea_var__acephalaESTVector

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