Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)



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Sequence ID Organism Sequence Type Contamination Type
150907075Brassica_oleraceaESTVector
150907096Brassica_oleraceaESTVector
150907108Brassica_oleraceaESTVector
150907162Brassica_oleraceaESTVector
150907367Brassica_oleraceaESTVector
150907377Brassica_oleraceaESTVector
150907414Brassica_oleraceaESTVector
150907426Brassica_oleraceaESTVector
150907445Brassica_oleraceaESTVector
150907462Brassica_oleraceaESTVector
150907542Brassica_oleraceaESTVector
150907569Brassica_oleraceaESTVector
150907658Brassica_oleraceaESTVector
150907662Brassica_oleraceaESTVector
150907686Brassica_oleraceaESTVector
150907705Brassica_oleraceaESTVector
150907734Brassica_oleraceaESTVector
150907770Brassica_oleraceaESTVector
150907781Brassica_oleraceaESTVector
150907814Brassica_oleraceaESTVector
150907822Brassica_oleraceaESTVector
150907826Brassica_oleraceaESTVector
150907912Brassica_oleraceaESTVector
150907918Brassica_oleraceaESTVector
150907928Brassica_oleraceaESTVector
150907934Brassica_oleraceaESTVector
150907950Brassica_oleraceaESTVector
150908013Brassica_oleraceaESTVector
150908029Brassica_oleraceaESTVector
150908042Brassica_oleraceaESTVector
150908046Brassica_oleraceaESTVector
150908055Brassica_oleraceaESTVector
150908056Brassica_oleraceaESTVector
150908068Brassica_oleraceaESTVector
150908106Brassica_oleraceaESTVector
150908111Brassica_oleraceaESTVector
150908334Brassica_oleraceaESTVector
150908358Brassica_oleraceaESTVector
150908364Brassica_oleraceaESTVector
150908402Brassica_oleraceaESTVector
150908423Brassica_oleraceaESTVector
150908449Brassica_oleraceaESTVector
150908453Brassica_oleraceaESTVector
150908477Brassica_oleraceaESTVector
150908553Brassica_oleraceaESTVector
150908614Brassica_oleraceaESTVector
150908646Brassica_oleraceaESTVector
150908732Brassica_oleraceaESTVector
150908788Brassica_oleraceaESTVector
150908797Brassica_oleraceaESTVector
150908837Brassica_oleraceaESTVector
150908838Brassica_oleraceaESTVector
150908849Brassica_oleraceaESTVector
150908868Brassica_oleraceaESTVector
150908877Brassica_oleraceaESTVector
150908945Brassica_oleraceaESTVector
150909035Brassica_oleraceaESTVector
150909073Brassica_oleraceaESTVector
150909133Brassica_oleraceaESTVector
150909136Brassica_oleraceaESTVector
150909147Brassica_oleraceaESTVector
150909256Brassica_oleraceaESTVector
150909276Brassica_oleraceaESTVector
150909463Brassica_oleraceaESTVector
150910368Brassica_oleraceaESTVector
150910549Brassica_oleraceaESTVector
150910787Brassica_oleraceaESTVector
150911098Brassica_oleraceaESTVector
150911364Brassica_oleraceaESTVector
150911444Brassica_oleraceaESTVector
150911858Brassica_oleraceaESTVector
150912290Brassica_oleraceaESTVector
150912428Brassica_oleraceaESTVector
150914614Brassica_oleraceaESTVector
150915292Brassica_oleraceaESTVector
150915971Brassica_oleraceaESTVector
150916639Brassica_oleraceaESTVector
150917089Brassica_oleraceaESTVector
150917157Brassica_oleraceaESTVector
150917200Brassica_oleraceaESTVector
150917241Brassica_oleraceaESTVector
150917524Brassica_oleraceaESTVector
150917597Brassica_oleraceaESTVector
150917764Brassica_oleraceaESTVector
150917925Brassica_oleraceaESTVector
150918682Brassica_oleraceaESTVector
150919238Brassica_oleraceaESTVector
150919450Brassica_oleraceaESTVector
150919466Brassica_oleraceaESTVector
150919497Brassica_oleraceaESTVector
150919511Brassica_oleraceaESTVector
150919512Brassica_oleraceaESTVector
150919514Brassica_oleraceaESTVector
56957237Brassica_oleraceaESTVector
150129456Brassica_oleraceaESTVector
150129535Brassica_oleraceaESTVector
150129561Brassica_oleraceaESTVector
150129575Brassica_oleraceaESTVector
150129580Brassica_oleraceaESTVector
150129619Brassica_oleraceaESTVector

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