Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
309963799Botryococcus_brauniiESTVector
309963850Botryococcus_brauniiESTVector
309965418Botryococcus_brauniiESTVector
309978033Botryococcus_brauniiESTVector
309975541Botryococcus_brauniiESTVector
309975737Botryococcus_brauniiESTVector
309975765Botryococcus_brauniiESTVector
309976807Botryococcus_brauniiESTVector
309984194Botryococcus_brauniiESTVector
309986174Botryococcus_brauniiESTVector
309991390Botryococcus_brauniiESTVector
309987125Botryococcus_brauniiESTVector
309987565Botryococcus_brauniiESTVector
309987924Botryococcus_brauniiESTVector
309987925Botryococcus_brauniiESTVector
309988166Botryococcus_brauniiESTVector
309991059Botryococcus_brauniiESTVector
310000166Botryococcus_brauniiESTVector
309994296Botryococcus_brauniiESTVector
309998081Botryococcus_brauniiESTVector
309998082Botryococcus_brauniiESTVector
309997674Botryococcus_brauniiESTVector
309992378Botryococcus_brauniiESTVector
309995636Botryococcus_brauniiESTVector
309999379Botryococcus_brauniiESTVector
309994570Botryococcus_brauniiESTVector
309994617Botryococcus_brauniiESTVector
310000262Botryococcus_brauniiESTVector
310001072Botryococcus_brauniiESTVector
310001073Botryococcus_brauniiESTVector
310002089Botryococcus_brauniiESTVector
310002201Botryococcus_brauniiESTVector
339570648Botryococcus_brauniiESTVector
339573794Botryococcus_brauniiESTVector
339572882Botryococcus_brauniiESTVector
339574233Botryococcus_brauniiESTVector
339574450Botryococcus_brauniiESTVector
339575667Botryococcus_brauniiESTVector
339571315Botryococcus_brauniiESTVector
339573326Botryococcus_brauniiESTVector
339569498Botryococcus_brauniiESTVector
339569593Botryococcus_brauniiESTVector
313418854Botryococcus_brauniiESTVector
313424172Botryococcus_brauniiESTVector
313420261Botryococcus_brauniiESTVector
313420289Botryococcus_brauniiESTVector
313420805Botryococcus_brauniiESTVector
313425667Botryococcus_brauniiESTVector
313433946Botryococcus_brauniiESTVector
313431354Botryococcus_brauniiESTVector
313435423Botryococcus_brauniiESTVector
313435863Botryococcus_brauniiESTVector
313436116Botryococcus_brauniiESTVector
313436117Botryococcus_brauniiESTVector
313440380Botryococcus_brauniiESTVector
313436375Botryococcus_brauniiESTVector
313437048Botryococcus_brauniiESTVector
313440341Botryococcus_brauniiESTVector
313437192Botryococcus_brauniiESTVector
313437193Botryococcus_brauniiESTVector
313438345Botryococcus_brauniiESTVector
313447291Botryococcus_brauniiESTVector
313448054Botryococcus_brauniiESTVector
313445507Botryococcus_brauniiESTVector
313446350Botryococcus_brauniiESTVector
313446397Botryococcus_brauniiESTVector
313446485Botryococcus_brauniiESTVector
313446997Botryococcus_brauniiESTVector
313446998Botryococcus_brauniiESTVector
313444751Botryococcus_brauniiESTVector
313444967Botryococcus_brauniiESTVector
313458935Botryococcus_brauniiESTVector
313458986Botryococcus_brauniiESTVector
313460770Botryococcus_brauniiESTVector

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