Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
291092544Boehmeria_clidemioides_var__diffusaESTVector
229470226Boehmeria_clidemioides_var__diffusaESTVector
229470246Boehmeria_clidemioides_var__diffusaESTVector

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