Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
34388533Betula_pendulaESTVector
34388587Betula_pendulaESTVector
34388636Betula_pendulaESTVector
34388678Betula_pendulaESTVector
34388839Betula_pendulaESTVector
34388840Betula_pendulaESTVector
34388857Betula_pendulaESTVector
34388901Betula_pendulaESTVector
34388948Betula_pendulaESTVector
34389064Betula_pendulaESTVector
34389068Betula_pendulaESTVector
34389253Betula_pendulaESTVector
34389341Betula_pendulaESTVector
34389378Betula_pendulaESTVector
34389412Betula_pendulaESTVector
34389657Betula_pendulaESTVector
34389717Betula_pendulaESTVector
34389770Betula_pendulaESTVector
34389882Betula_pendulaESTVector
34389952Betula_pendulaESTVector
34390084Betula_pendulaESTVector
34390107Betula_pendulaESTVector
34390290Betula_pendulaESTVector
34390316Betula_pendulaESTVector
34390477Betula_pendulaESTVector
34390727Betula_pendulaESTVector
34390740Betula_pendulaESTVector
34390852Betula_pendulaESTVector
34390935Betula_pendulaESTVector
34391048Betula_pendulaESTVector
34391049Betula_pendulaESTVector
34391062Betula_pendulaESTVector

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