Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
311063233Beta_vulgaris_subsp__vulgarisESTVector
209411533Beta_vulgaris_subsp__vulgarisESTVector
209411028Beta_vulgaris_subsp__vulgarisESTVector

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