Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
18648604Avicennia_marinaESTVector
18648605Avicennia_marinaESTVector
17312724Avicennia_marinaESTVector
17312725Avicennia_marinaESTVector
17312738Avicennia_marinaESTVector
17312801Avicennia_marinaESTVector
32448925Avicennia_marinaESTVector
32448934Avicennia_marinaESTVector
32448987Avicennia_marinaESTVector
32448988Avicennia_marinaESTVector
32448993Avicennia_marinaESTVector
32449055Avicennia_marinaESTVector
32449070Avicennia_marinaESTVector
32449076Avicennia_marinaESTVector
32449087Avicennia_marinaESTVector
32449146Avicennia_marinaESTVector
32449177Avicennia_marinaESTVector
32449189Avicennia_marinaESTVector
32449191Avicennia_marinaESTVector
32449251Avicennia_marinaESTVector
10794559Avicennia_marinaESTVector

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