Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
254680279Arnebia_euchromaESTVector
254680399Arnebia_euchromaESTVector
254680415Arnebia_euchromaESTVector
254680580Arnebia_euchromaESTVector
254680603Arnebia_euchromaESTVector
254680622Arnebia_euchromaESTVector
320542015Arnebia_euchromaESTVector
152004300Arnebia_euchromaESTVector
152004304Arnebia_euchromaESTVector
152004322Arnebia_euchromaESTVector
152004327Arnebia_euchromaESTVector

Loading Help Page...Thanks for your patience!

Loading Video...Thanks for your patience!

Loading Image...Thanks for your patience!