Vector Contamination List

At PlantGDB, efforts are undertaken to identify and remove all contaminant DNA so that a clean dataset is made available to researchers. Here, we use the Vmatch program (with options -l 50 -identity 90) to screen EST sequences against UniVec for vector contaminations as well as against E. coli genomes for bacterial sequences contaminations. The table lists the individual contaminated sequence. (Return to Vector Contamination menu)

Sequence ID Organism Sequence Type Contamination Type
166920009Aristolochia_fimbriataESTVector
166919928Aristolochia_fimbriataESTVector
166922876Aristolochia_fimbriataESTVector
166920496Aristolochia_fimbriataESTVector
166923036Aristolochia_fimbriataESTVector
166921764Aristolochia_fimbriataESTVector
166923623Aristolochia_fimbriataESTVector
166920961Aristolochia_fimbriataESTVector
166923266Aristolochia_fimbriataESTVector
166923537Aristolochia_fimbriataESTVector
166923694Aristolochia_fimbriataESTVector
166922157Aristolochia_fimbriataESTVector
166922257Aristolochia_fimbriataESTVector
166923061Aristolochia_fimbriataESTVector
166920186Aristolochia_fimbriataESTVector
166925039Aristolochia_fimbriataESTVector
166925887Aristolochia_fimbriataESTVector
166924236Aristolochia_fimbriataESTVector
166924260Aristolochia_fimbriataESTVector
166925990Aristolochia_fimbriataESTVector
166924188Aristolochia_fimbriataESTVector
166924911Aristolochia_fimbriataESTVector
166927818Aristolochia_fimbriataESTVector
166926078Aristolochia_fimbriataESTVector
166924556Aristolochia_fimbriataESTVector
166924296Aristolochia_fimbriataESTVector
166927680Aristolochia_fimbriataESTVector
166923871Aristolochia_fimbriataESTVector
166930792Aristolochia_fimbriataESTVector
166928158Aristolochia_fimbriataESTVector
166928900Aristolochia_fimbriataESTVector
166929078Aristolochia_fimbriataESTVector
166930745Aristolochia_fimbriataESTVector
166931760Aristolochia_fimbriataESTVector
166931923Aristolochia_fimbriataESTVector
166932680Aristolochia_fimbriataESTVector
166933760Aristolochia_fimbriataESTVector
166932293Aristolochia_fimbriataESTVector
166932712Aristolochia_fimbriataESTVector
166933247Aristolochia_fimbriataESTVector
166933856Aristolochia_fimbriataESTVector
166934315Aristolochia_fimbriataESTVector
166934332Aristolochia_fimbriataESTVector
166934656Aristolochia_fimbriataESTVector
166934705Aristolochia_fimbriataESTVector
166934831Aristolochia_fimbriataESTVector
166934875Aristolochia_fimbriataESTVector
166934993Aristolochia_fimbriataESTVector
166935002Aristolochia_fimbriataESTVector
166935003Aristolochia_fimbriataESTVector
166935009Aristolochia_fimbriataESTVector
166935283Aristolochia_fimbriataESTVector
166935366Aristolochia_fimbriataESTVector
166935180Aristolochia_fimbriataESTVector
166935307Aristolochia_fimbriataESTVector
166934369Aristolochia_fimbriataESTVector
166933963Aristolochia_fimbriataESTVector
166934086Aristolochia_fimbriataESTVector
166934442Aristolochia_fimbriataESTVector
166934721Aristolochia_fimbriataESTVector
166935773Aristolochia_fimbriataESTVector
166936036Aristolochia_fimbriataESTVector

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